ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08f11 |
|---|---|
| Clone Library Name | barley_pub |
>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13| protein) (DOA4-independent degradation protein 6) Length = 437 Score = 101 bits (251), Expect = 9e-22 Identities = 56/142 (39%), Positives = 75/142 (52%) Frame = +2 Query: 14 NFKEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYL 193 +F + IE V++A+ D A Y +A+ Y N L+Y LKYEKNPK K+ I AKFTEYL Sbjct: 5 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL 64 Query: 194 RRAEEIRAVLDEXXXXXXXXXXXXXXXVATRPKTXXXXXXXXXXXXXXSEQSKLRAGLNS 373 RAE+++ L+ K + KLR L+S Sbjct: 65 NRAEQLKKHLESEEANAAKKSPSAGSGSNGGNK---KISQEEGEDNGGEDNKKLRGALSS 121 Query: 374 AIITEKPNIKWNDVAGLESAKQ 439 AI++EKPN+KW DVAGLE AK+ Sbjct: 122 AILSEKPNVKWEDVAGLEGAKE 143
>VPS4_SCHPO (Q09803) Suppressor protein of bem1/bed5 double mutants| Length = 432 Score = 100 bits (248), Expect = 2e-21 Identities = 55/138 (39%), Positives = 73/138 (52%) Frame = +2 Query: 26 QAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAE 205 +AI VK A+ DNA Y A+ Y +AL+YF LKYEKN K KE I +K EYL RAE Sbjct: 9 KAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAE 68 Query: 206 EIRAVLDEXXXXXXXXXXXXXXXVATRPKTXXXXXXXXXXXXXXSEQSKLRAGLNSAIIT 385 +++ L E V S+ KLR+ L SAI+ Sbjct: 69 KLKVYLQEKNNQISSKSRVSNGNV-------EGSNSPTANEALDSDAKKLRSALTSAILV 121 Query: 386 EKPNIKWNDVAGLESAKQ 439 EKPN++W+D+AGLE+AK+ Sbjct: 122 EKPNVRWDDIAGLENAKE 139
>VPS4B_MOUSE (P46467) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 86.7 bits (213), Expect = 2e-17 Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Frame = +2 Query: 23 EQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTEYLRR 199 ++AI+ +A QED AG+Y +A LY +A++YF +KYE + K K++I AK TEYL R Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68 Query: 200 AEEIRAVLDEXXXXXXXXXXXXXXXVATRPKTXXXXXXXXXXXXXXSEQSKLRAGLNSAI 379 AE+++ L + P E+ KL+ L AI Sbjct: 69 AEKLKEYLKKKEKKPQKPVKEEQSG----PVDEKGNDSDGEAESDDPEKKKLQNQLQGAI 124 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E+PN+KW+DVAGLE AK+ Sbjct: 125 VIERPNVKWSDVAGLEGAKE 144
>VPS4B_HUMAN (O75351) Vacuolar sorting protein 4b (SKD1 protein)| Length = 444 Score = 86.7 bits (213), Expect = 2e-17 Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Frame = +2 Query: 23 EQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTEYLRR 199 ++AI+ +A QED AG+Y +A LY +A++YF +KYE + K K++I AK TEYL R Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68 Query: 200 AEEIRAVLDEXXXXXXXXXXXXXXXVATRPKTXXXXXXXXXXXXXXSEQSKLRAGLNSAI 379 AE+++ L P E+ KL+ L AI Sbjct: 69 AEKLKEYLKNKEKKAQKPVKEGQPS----PADEKGNDSDGEGESDDPEKKKLQNQLQGAI 124 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E+PN+KW+DVAGLE AK+ Sbjct: 125 VIERPNVKWSDVAGLEGAKE 144
>VPS4A_HUMAN (Q9UN37) Vacuolar sorting protein 4a (SKD2 protein) (hVPS4)| (VPS4-1) Length = 437 Score = 83.6 bits (205), Expect = 2e-16 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 1/146 (0%) Frame = +2 Query: 5 MYSNFKEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKF 181 M ++ ++AI+ V +A +ED A +Y +A LY +A+EYF +KYE + K KE+I AK Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60 Query: 182 TEYLRRAEEIRAVLDEXXXXXXXXXXXXXXXVATRPKTXXXXXXXXXXXXXXSEQSKLRA 361 +YL RAE+++ L + E+ KL+ Sbjct: 61 VQYLDRAEKLKDYL---------RSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQE 111 Query: 362 GLNSAIITEKPNIKWNDVAGLESAKQ 439 L A++ EKPNI+WNDVAGLE AK+ Sbjct: 112 QLMGAVVMEKPNIRWNDVAGLEGAKE 137
>VPS4A_MOUSE (Q8VEJ9) Vacuolar sorting protein 4a| Length = 437 Score = 83.2 bits (204), Expect = 3e-16 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 1/146 (0%) Frame = +2 Query: 5 MYSNFKEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKF 181 M ++ ++AI+ V +A +ED A +Y +A LY +A+EYF +KYE + K KE+I AK Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60 Query: 182 TEYLRRAEEIRAVLDEXXXXXXXXXXXXXXXVATRPKTXXXXXXXXXXXXXXSEQSKLRA 361 +YL RAE+++ L + E+ KL+ Sbjct: 61 MQYLDRAEKLKDYLRNKEKHGKK---------PVKENQSEGKGSDSDSEGDNPEKKKLQE 111 Query: 362 GLNSAIITEKPNIKWNDVAGLESAKQ 439 L A++ EKPNI+WNDVAGLE AK+ Sbjct: 112 QLMGAVVMEKPNIRWNDVAGLEGAKE 137
>RPKL1_PONPY (Q5RA67) Ribosomal protein S6 kinase-like 1 (EC 2.7.11.1)| Length = 549 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = +2 Query: 29 AIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAEE 208 A ++ A++ D + DY AF Y N ++ + + N + +EA+ K T+YLRRAEE Sbjct: 53 AATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVDPNKERREAVKLKITKYLRRAEE 112 Query: 209 I 211 I Sbjct: 113 I 113
>RPKL1_HUMAN (Q9Y6S9) Ribosomal protein S6 kinase-like 1 (EC 2.7.11.1)| Length = 549 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = +2 Query: 29 AIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAEE 208 A ++ A++ D + DY AF Y N ++ + + N + +EA+ K T+YLRRAEE Sbjct: 53 AATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVDPNKERREAVKLKITKYLRRAEE 112 Query: 209 I 211 I Sbjct: 113 I 113
>RPKL1_MOUSE (Q8R2S1) Ribosomal protein S6 kinase-like 1 (EC 2.7.11.1)| Length = 544 Score = 43.1 bits (100), Expect = 3e-04 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = +2 Query: 29 AIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAEE 208 A + A++ D + DY AF Y N ++ + + N + +EA+ K T+YLRRAEE Sbjct: 53 AATQIHLALERDVSEDYEAAFNHYQNGVDVLLRGVHVDPNKERREAVKLKITKYLRRAEE 112 Query: 209 I 211 I Sbjct: 113 I 113
>SNX15_HUMAN (Q9NRS6) Sorting nexin-15| Length = 342 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = +2 Query: 17 FKEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLR 196 + QA E + QA++++ AG Y A Y + + + + P +E + K EYL+ Sbjct: 268 YLSQATELITQALRDEKAGAYAAALQGYRDGVHVLLQGVPSDPLPARQEGVKKKAAEYLK 327 Query: 197 RAEEI 211 RAEEI Sbjct: 328 RAEEI 332
>KS6C1_HUMAN (Q96S38) Ribosomal protein S6 kinase delta-1 (EC 2.7.11.1) (52 kDa| ribosomal protein S6 kinase) (Ribosomal S6 kinase-like protein with two PSK domains 118 kDa protein) (SPHK1-binding protein) Length = 1066 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/69 (28%), Positives = 38/69 (55%) Frame = +2 Query: 14 NFKEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYL 193 ++ E+A E +K A++++ DY A Y ++ ++ E +P +EA+ + EYL Sbjct: 238 DYLEKAGELIKLALKKEEEDDYEAASDFYRKGVDLLLEGVQGESSPTRREAVKRRTAEYL 297 Query: 194 RRAEEIRAV 220 RAE I ++ Sbjct: 298 MRAESISSL 306
>KS6C1_MOUSE (Q8BLK9) Ribosomal protein S6 kinase delta-1 (EC 2.7.11.1) (52 kDa| ribosomal protein S6 kinase) Length = 1056 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/66 (30%), Positives = 36/66 (54%) Frame = +2 Query: 14 NFKEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYL 193 ++ E+A E +K A++++ DY A Y ++ ++ E +P +EA+ + EYL Sbjct: 237 DYLEKAGELIKLALKKEEEDDYEAASDFYRKGVDLLLEGVQGESSPTRREAVKRRTAEYL 296 Query: 194 RRAEEI 211 RAE I Sbjct: 297 MRAESI 302
>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297| Length = 733 Score = 34.3 bits (77), Expect = 0.14 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 377 IITEKPNIKWNDVAGLESAKQ 439 ++ E PN+KW D+ GLE AKQ Sbjct: 445 VLVEVPNVKWEDIGGLEHAKQ 465
>EX5B_BUCBP (Q89AB3) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1180 Score = 33.5 bits (75), Expect = 0.24 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +2 Query: 95 LYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAEEIR 214 LY+ L H+KY+K IKE + FTE+ R EIR Sbjct: 37 LYIRLLLGITNHVKYKKGLLIKEILVVTFTEHTRAELEIR 76
>KTNA1_XENLA (Q9PUL2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Fragment) Length = 486 Score = 33.1 bits (74), Expect = 0.31 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L II++ PNI+W+D+A LE AK+ Sbjct: 192 LERDIISQNPNIRWDDIADLEEAKK 216
>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156| Length = 903 Score = 33.1 bits (74), Expect = 0.31 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 377 IITEKPNIKWNDVAGLESAKQ 439 ++ E PN+KW D+ GLE KQ Sbjct: 442 VLVEVPNVKWEDIGGLEEVKQ 462
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 31.6 bits (70), Expect = 0.91 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +2 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E PN+ WND+ GLE+ K+ Sbjct: 471 VVEVPNVSWNDIGGLENVKR 490
>FTSH_HELPY (P71408) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 632 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%) Frame = +2 Query: 362 GLNSA---IITEKPNIKWNDVAGLESAKQ 439 G+ SA I EKPN+++ND+AG E AK+ Sbjct: 152 GMGSAKKLINAEKPNVRFNDMAGNEEAKE 180
>FTSH_HELPJ (Q9ZM66) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 632 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%) Frame = +2 Query: 362 GLNSA---IITEKPNIKWNDVAGLESAKQ 439 G+ SA I EKPN+++ND+AG E AK+ Sbjct: 152 GMGSAKKLINAEKPNVRFNDMAGNEEAKE 180
>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) Length = 523 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 353 LRAGLNSAIITEKPNIKWNDVAGLESAKQ 439 L A L ++ P ++W+DVAGL AK+ Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKR 249
>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L II++ PN++W+D+A L AK+ Sbjct: 195 LERDIISQNPNVRWDDIADLVEAKK 219
>Y208_BORBU (O51226) Hypothetical protein BB0208| Length = 581 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 98 YMNALEYFKTHLKYEKNPKIKEAITAKF 181 +++ALEY + H KIKE ITAKF Sbjct: 322 FIDALEYIEKHKLINIKEKIKEIITAKF 349
>NIFE_RHOCA (P19055) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifE Length = 477 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = -3 Query: 439 LLGALEPGDVVPLDVGLLGDDGRV----EPSPELGLLGVVPAGAV 317 ++GALEP V P DV ++GD G + P L LG+ G++ Sbjct: 184 VVGALEPETVTPCDVNIIGDYGLSGELWQVKPLLDKLGIRILGSI 228
>Y875_METJA (Q58285) Hypothetical protein MJ0875| Length = 748 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +2 Query: 20 KEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPK 154 ++QA+ K+A +E G+Y K+ L++ A E + ++ EKN K Sbjct: 12 RKQAVNLEKEAKKEKQNGNYKKSAELFLKASEIY-NKIRDEKNKK 55
>SAV_SULAC (Q07590) SAV protein| Length = 780 Score = 29.6 bits (65), Expect = 3.5 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +2 Query: 353 LRAGLNSAIITEKPNIKWNDVAGLESAKQ 439 ++ L + E P + WND+ GL++ KQ Sbjct: 469 IQPSLLREVYVEVPKVNWNDIGGLDNVKQ 497
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 29.6 bits (65), Expect = 3.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E PN++W D+ GLE K+ Sbjct: 488 VVEVPNVRWEDIGGLEEVKR 507
>YHN8_YEAST (P38799) Hypothetical 63.3 kDa protein in NMD2-IRE1 intergenic| region Length = 552 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +2 Query: 20 KEQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 184 +++ I +K V + G YV A L + ++HL +E + ++KE + KFT Sbjct: 464 EQKGISLIKNLVVSELTGVYVLATTLMV------RSHLPFEVSQRLKELLGGKFT 512
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E PN+ W D+ GLE+ K+ Sbjct: 472 VVEVPNVSWEDIGGLENVKR 491
>VAT_THEAC (O05209) VCP-like ATPase| Length = 745 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +2 Query: 377 IITEKPNIKWNDVAGLESAKQ 439 ++ E PN+ W+D+ GLE K+ Sbjct: 457 VMVEVPNVHWDDIGGLEDVKR 477
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E PN+ W D+ GLE+ K+ Sbjct: 472 VVEVPNVSWEDIGGLENVKR 491
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E PN+ W D+ GLE+ K+ Sbjct: 472 VVEVPNVSWEDIGGLENVKR 491
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +2 Query: 380 ITEKPNIKWNDVAGLESAKQ 439 + E PN+ W D+ GLE+ K+ Sbjct: 471 VVEVPNVSWEDIGGLENVKR 490
>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) Length = 516 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L I+ PN+ W D+AGL AK+ Sbjct: 220 LERDIVQRNPNVHWADIAGLTEAKR 244
>KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L II++ PN++W D+A L AK+ Sbjct: 195 LERDIISQNPNVRWYDIADLVEAKK 219
>KTNA1_MOUSE (Q9WV86) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) (Lipotransin) Length = 491 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L II++ PN++W D+A L AK+ Sbjct: 195 LERDIISQNPNVRWYDIADLVEAKK 219
>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 488 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L I++ P+I W+D+A LE AK+ Sbjct: 192 LERDIVSRNPSIHWDDIADLEEAKK 216
>KATL1_MOUSE (Q8K0T4) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 488 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L I++ P+I W+D+A LE AK+ Sbjct: 192 LERDIVSRNPSIHWDDIADLEEAKK 216
>KATL1_HUMAN (Q9BW62) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 490 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 365 LNSAIITEKPNIKWNDVAGLESAKQ 439 L I++ P+I W+D+A LE AK+ Sbjct: 194 LERDIVSRNPSIHWDDIADLEEAKK 218
>YCF3_SYNPX (Q7U435) Photosystem I assembly protein ycf3| Length = 173 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +2 Query: 23 EQAIEYVKQAVQEDNAGDYVKAFPLYMNALEYFKTHLKYEKNPKIK-EAITAKFTEYLRR 199 ++A Y + + N GDY +A LE + LK E NP + E + Y+ Sbjct: 33 KEAYVYYRDGLSAQNDGDYAEA-------LENYDEALKLEDNPTDRGETLKNMAIIYMSN 85 Query: 200 AEEIRAV 220 EE RA+ Sbjct: 86 GEEERAI 92
>ARGB_NOCFA (Q5YYF7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 303 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 415 DVVPLDVGLLGDDGRVEPSPELGLLGVVPAGAVP 314 D P D+GL+GD V P L L+G AG +P Sbjct: 145 DGEPTDIGLVGDVTEVNPDAVLDLIG---AGRIP 175
>PMAX_ARATH (Q9T0E0) Putative ATPase, plasma membrane-like| Length = 813 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 430 ALEPGDVVPLDVGLL-GDDGRVEPSPELGLLGVVPAG 323 +++PGD++P D LL GD +V+ S G G + G Sbjct: 156 SIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKG 192
>ARGB_CORGL (Q59281) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 294 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 415 DVVPLDVGLLGDDGRVEPSPELGLLGVVPAGAVP 314 D VP D+GL+GD V+ S L+ ++ AG +P Sbjct: 123 DGVPTDIGLVGDIINVDAS---SLMDIIEAGRIP 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,056,192 Number of Sequences: 219361 Number of extensions: 561881 Number of successful extensions: 2602 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 2532 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2595 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
