ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCK1_FOWPV (P21974) Probable deoxycytidine kinase FPV059 (EC 2.7... 31 1.3
2IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2 29 5.0

>DCK1_FOWPV (P21974) Probable deoxycytidine kinase FPV059 (EC 2.7.1.74) (dCK)|
          Length = 219

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 340 FLFVADVAELARMADPRYAVLCVHHD-YTPKEATQMDGAV 456
           ++F      L  M DP +A+ C  HD YT K   Q DG +
Sbjct: 100 YVFAEAATALGYMDDPEWALYCKQHDWYTDKLEIQFDGII 139



to top

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
 Frame = +3

Query: 45  GTMPAPR-R*ERPRDGR-AIPRVRGLRLPRGHRIPRVPXXXXXXXXXXXGGHPDRPA-GA 215
           G   APR   + PR G     R +G+  P    IPR             GG P RP  G 
Sbjct: 175 GNASAPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTADNGRGGRPGRPGQGQ 234

Query: 216 PRGRAVLAGARADGERG 266
            +GR    G    G +G
Sbjct: 235 GQGRGFRGGRPGQGGQG 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,070,827
Number of Sequences: 219361
Number of extensions: 706523
Number of successful extensions: 2716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2708
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top