ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart08f05 |
|---|---|
| Clone Library Name | barley_pub |
>RL2_METTH (O26113) 50S ribosomal protein L2P| Length = 241 Score = 33.1 bits (74), Expect = 0.40 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Frame = -3 Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDG 288 V + P GGG R+HP R V PP ++VG +AA G Sbjct: 196 VAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAARRTG 238
>YDZC_SCHPO (O13719) Hypothetical protein C14C4.12c in chromosome I| Length = 297 Score = 32.0 bits (71), Expect = 0.90 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = -1 Query: 478 AEAWDQRKRMPRVRMXPWQRRVRRWYSRTSNSSQMAVAPASTP---PEIFLFLHSKRSAG 308 ++ +D + P++ W RR R+W R S + + + A P P FL +H+ + Sbjct: 78 SKVYDLYRDSPKI----WLRRERQWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRK 133 Query: 307 LPPPRTEWTGFSRP 266 P T +G S P Sbjct: 134 RGSPDTPDSGHSTP 147
>TRMB_STRT2 (Q5M332) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 213 Score = 30.8 bits (68), Expect = 2.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314 P + K K +++FG + P+H +G GK A Sbjct: 24 PEAAKGKWHQIFGNDNPIHIEVGSGKGA 51
>TRMB_STRT1 (Q5LYG9) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 213 Score = 30.8 bits (68), Expect = 2.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314 P + K K +++FG + P+H +G GK A Sbjct: 24 PEAAKGKWHQIFGNDNPIHIEVGSGKGA 51
>RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4)| Length = 239 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -3 Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGVDG 279 V + P GGG R+HP + + PP ++VG +A+ G G Sbjct: 192 VAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG 237
>RL2_METMA (Q8PV47) 50S ribosomal protein L2P| Length = 238 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -3 Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 285 V + + P GGGA +HP + V PP ++VG +AA G+ Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236
>RL2_METAC (Q8TRU4) 50S ribosomal protein L2P| Length = 238 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = -3 Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 285 V + + P GGGA +HP + V PP ++VG +AA G+ Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236
>TRMB_STRR6 (P67507) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 211 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314 P KAK LFG + P+H +G GK A Sbjct: 24 PLEAKAKWRDLFGNDNPIHVEVGSGKGA 51
>TRMB_STRPN (P67506) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 211 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314 P KAK LFG + P+H +G GK A Sbjct: 24 PLEAKAKWRDLFGNDNPIHVEVGSGKGA 51
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 28.9 bits (63), Expect = 7.6 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +3 Query: 300 GGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTL 446 G K ADLL W++ + SG V G L +L + ++++ H +L L Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLL 388
>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)| (Semaphorin C-like 2) (M-Sema G) Length = 861 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = -1 Query: 457 KRMPRVRMXPWQRRVRRWYSRTSNSSQMAVAPASTPPEIFLFLHSKRSAGLPPPRTEWT 281 K +PR P V+ S+ ++ + S+PP L+ S R+A LPP + T Sbjct: 647 KMVPRTPPSPTSEDVQTEGSKITSKMPVGSTQGSSPPTPALWATSPRAATLPPKSSSGT 705
>TRMB_BACLD (Q65G12) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 213 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGK 308 PS K K + +FG + P+H +G GK Sbjct: 24 PSQYKGKWHSVFGNDNPIHIEVGTGK 49
>TRMB_LISMO (Q8Y6R8) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 214 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHL 410 P K + + +FG + P+H +G GK + ISG A ++ E++E L Sbjct: 24 PEDFKGQWHEVFGNDNPIHIEIGSGK--------GQFISGMAKANPEINYIGIEMIESVL 75 Query: 411 LTLL 422 ++ L Sbjct: 76 VSAL 79
>RL2_HALSA (Q9HPD1) 50S ribosomal protein L2P| Length = 239 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = -3 Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGVDG 279 V + P GGG R+HP R V P ++VG +A+ G G Sbjct: 192 VAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVGDIASKRTGRGG 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,754,448 Number of Sequences: 219361 Number of extensions: 588402 Number of successful extensions: 2310 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2306 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
