ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL2_METTH (O26113) 50S ribosomal protein L2P 33 0.40
2YDZC_SCHPO (O13719) Hypothetical protein C14C4.12c in chromosome I 32 0.90
3TRMB_STRT2 (Q5M332) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 31 2.0
4TRMB_STRT1 (Q5LYG9) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 31 2.0
5RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4) 30 3.4
6RL2_METMA (Q8PV47) 50S ribosomal protein L2P 30 4.4
7RL2_METAC (Q8TRU4) 50S ribosomal protein L2P 30 4.4
8TRMB_STRR6 (P67507) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 29 5.8
9TRMB_STRPN (P67506) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 29 5.8
10RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein... 29 7.6
11SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sem... 29 7.6
12TRMB_BACLD (Q65G12) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 29 7.6
13TRMB_LISMO (Q8Y6R8) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 28 9.9
14RL2_HALSA (Q9HPD1) 50S ribosomal protein L2P 28 9.9

>RL2_METTH (O26113) 50S ribosomal protein L2P|
          Length = 241

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -3

Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDG 288
           V  +    P GGG R+HP R   V    PP ++VG +AA   G
Sbjct: 196 VAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAARRTG 238



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>YDZC_SCHPO (O13719) Hypothetical protein C14C4.12c in chromosome I|
          Length = 297

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -1

Query: 478 AEAWDQRKRMPRVRMXPWQRRVRRWYSRTSNSSQMAVAPASTP---PEIFLFLHSKRSAG 308
           ++ +D  +  P++    W RR R+W  R S + + +   A  P   P  FL +H+  +  
Sbjct: 78  SKVYDLYRDSPKI----WLRRERQWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRK 133

Query: 307 LPPPRTEWTGFSRP 266
              P T  +G S P
Sbjct: 134 RGSPDTPDSGHSTP 147



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>TRMB_STRT2 (Q5M332) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 213

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314
           P + K K +++FG + P+H  +G GK A
Sbjct: 24  PEAAKGKWHQIFGNDNPIHIEVGSGKGA 51



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>TRMB_STRT1 (Q5LYG9) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 213

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314
           P + K K +++FG + P+H  +G GK A
Sbjct: 24  PEAAKGKWHQIFGNDNPIHIEVGSGKGA 51



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>RL2_HALMA (P20276) 50S ribosomal protein L2P (Hmal2) (Hl4)|
          Length = 239

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGVDG 279
           V  +    P GGG R+HP +   +    PP ++VG +A+   G  G
Sbjct: 192 VAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGG 237



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>RL2_METMA (Q8PV47) 50S ribosomal protein L2P|
          Length = 238

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 285
           V  + +  P GGGA +HP +   V    PP ++VG +AA   G+
Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236



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>RL2_METAC (Q8TRU4) 50S ribosomal protein L2P|
          Length = 238

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGV 285
           V  + +  P GGGA +HP +   V    PP ++VG +AA   G+
Sbjct: 193 VAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTGM 236



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>TRMB_STRR6 (P67507) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 211

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314
           P   KAK   LFG + P+H  +G GK A
Sbjct: 24  PLEAKAKWRDLFGNDNPIHVEVGSGKGA 51



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>TRMB_STRPN (P67506) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 211

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPA 314
           P   KAK   LFG + P+H  +G GK A
Sbjct: 24  PLEAKAKWRDLFGNDNPIHVEVGSGKGA 51



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>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 545

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 300 GGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTL 446
           G K ADLL W++ + SG V  G     L   +L + ++++  H  +L L
Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLL 388



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>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 457 KRMPRVRMXPWQRRVRRWYSRTSNSSQMAVAPASTPPEIFLFLHSKRSAGLPPPRTEWT 281
           K +PR    P    V+   S+ ++   +     S+PP   L+  S R+A LPP  +  T
Sbjct: 647 KMVPRTPPSPTSEDVQTEGSKITSKMPVGSTQGSSPPTPALWATSPRAATLPPKSSSGT 705



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>TRMB_BACLD (Q65G12) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 213

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGK 308
           PS  K K + +FG + P+H  +G GK
Sbjct: 24  PSQYKGKWHSVFGNDNPIHIEVGTGK 49



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>TRMB_LISMO (Q8Y6R8) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 214

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 231 PSSVKAKIYRLFGREKPVHSVLGGGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHL 410
           P   K + + +FG + P+H  +G GK         + ISG   A     ++  E++E  L
Sbjct: 24  PEDFKGQWHEVFGNDNPIHIEIGSGK--------GQFISGMAKANPEINYIGIEMIESVL 75

Query: 411 LTLL 422
           ++ L
Sbjct: 76  VSAL 79



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>RL2_HALSA (Q9HPD1) 50S ribosomal protein L2P|
          Length = 239

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -3

Query: 404 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDGVDG 279
           V  +    P GGG R+HP R   V     P ++VG +A+   G  G
Sbjct: 192 VAMNAVDHPFGGGGRQHPGRPKSVSRDAAPGRKVGDIASKRTGRGG 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,754,448
Number of Sequences: 219361
Number of extensions: 588402
Number of successful extensions: 2310
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2306
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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