Clone Name | bart08e10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_475461.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 750 Score = 313 bits (158), Expect = 3e-82 Identities = 268/305 (87%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 |||||||||||||| ||||| |||||||| ||||||||||| |||||||| || || ||| Sbjct: 1 atgagtagcatagggactggttatgatctttccgtcaccaccttctccccagatggccgt 60 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct: 61 gtcttccaggttgagtatgctggcaaggccgtcgacaacagcgggactgttgttggcatc 120 Query: 250 aaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgatactt 309 |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| | Sbjct: 121 aaatgcaaagatgggattgtccttggtgtggagaagctggtaacatcaaagatgattttg 180 Query: 310 gccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggctgtggctggg 369 |||||||| |||||||| || || |||||||| |||||||||||||||| ||||| Sbjct: 181 aaggggtcgaatcggagactccactctgtgcaccgacactctggcttggctgttgctggt 240 Query: 370 ttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagccaattatgaa 429 ||||| || || ||||||||||||||||| || ||||||||||| ||||||| ||||||| Sbjct: 241 ttagctgcggatggtaggcagatagtctctagggcaaagtcagaggcagccagttatgaa 300 Query: 430 naggt 434 |||| Sbjct: 301 aaggt 305
>gb|AY109645.1| Zea mays CL4356_2 mRNA sequence Length = 1252 Score = 268 bits (135), Expect = 1e-68 Identities = 269/314 (85%) Strand = Plus / Minus Query: 121 aacttaacaatgagtagcataggaactgggtatgatctgtccgtcaccactttctccccg 180 ||||| |||||||| |||||||| || || || |||||||| |||||||| |||||||| Sbjct: 1045 aacttgacaatgagcagcataggcacaggttacgatctgtctgtcaccaccttctcccca 986 Query: 181 gacggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatc 240 || || ||||||||||||||||| |||||| |||||||||||||||||||||||| | Sbjct: 985 gatggtcgtgtcttccaggtcgaatatgctaccaaggccgtcgacaacagcgggactgtt 926 Query: 241 gttgggatcaaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaag 300 ||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||| Sbjct: 925 gttgggatcaagtgcaaagatggcattgtcctgggtgttgagaagctggtaacctcaaag 866 Query: 301 atgatacttgccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggct 360 ||||| || | ||||| |||||||| | ||||| ||||||||| |||||||||||||| Sbjct: 865 atgatgctggaagggtcaaaccggaggatccattcagtgcaccggcactctggcttggct 806 Query: 361 gtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagcc 420 || ||||| ||||||||||| || ||||| || || ||||| | ||||||||||| ||| Sbjct: 805 gttgctggtttagcagcagatggcaggcaaattgtttcaaggacgaagtcagaagctgcc 746 Query: 421 aattatgaanaggt 434 | ||||||| |||| Sbjct: 745 agttatgaaaaggt 732
>gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence Length = 1266 Score = 212 bits (107), Expect = 7e-52 Identities = 262/314 (83%) Strand = Plus / Plus Query: 121 aacttaacaatgagtagcataggaactgggtatgatctgtccgtcaccactttctccccg 180 ||||| || ||||| |||||||| || || || ||| |||| ||||| ||||||||||| Sbjct: 178 aacttgaccatgagcagcataggcacaggttacgatttgtctgtcacgactttctcccca 237 Query: 181 gacggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatc 240 || || ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct: 238 gatggtcgtgtcttccaggtcgagtatgccaccaaggccgtcgacaacagcgggactgtt 297 Query: 241 gttgggatcaaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaag 300 ||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||| Sbjct: 298 gttgggatcaagtgcaaagatggcattgtcctgggtgtcgagaagctggtaacctcaaag 357 Query: 301 atgatacttgccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggct 360 ||||| || | || || ||||| || | ||||| |||||||| |||||||||||| | Sbjct: 358 atgatgctggaaggatcaaaccgaaggatccattcggtgcaccgtcactctggcttggtt 417 Query: 361 gtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagcc 420 || ||||| ||||||||||| || ||||| || || ||||| | || |||||||| ||| Sbjct: 418 gttgctggtttagcagcagatggcaggcaaattgtttcaaggaccaaatcagaagctgcc 477 Query: 421 aattatgaanaggt 434 | ||||||| |||| Sbjct: 478 agttatgaaaaggt 491
>gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence Length = 1256 Score = 204 bits (103), Expect = 2e-49 Identities = 261/314 (83%) Strand = Plus / Plus Query: 121 aacttaacaatgagtagcataggaactgggtatgatctgtccgtcaccactttctccccg 180 ||||| || ||||| || ||||| || || || ||| |||| ||||| ||||||||||| Sbjct: 172 aacttgaccatgagcaggataggcacaggttacgatttgtctgtcacgactttctcccca 231 Query: 181 gacggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatc 240 || || ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct: 232 gatggtcgtgtcttccaggtcgagtatgccaccaaggccgtcgacaacagcgggactgtt 291 Query: 241 gttgggatcaaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaag 300 ||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||| Sbjct: 292 gttgggatcaagtgcaaagatggcattgtcctgggtgtcgagaagctggtaacctcaaag 351 Query: 301 atgatacttgccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggct 360 ||||| || | || || ||||| || | ||||| |||||||| |||||||||||| | Sbjct: 352 atgatgctggaaggatcaaaccgaaggatccattcggtgcaccgtcactctggcttggtt 411 Query: 361 gtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagcc 420 || ||||| ||||||||||| || ||||| || || ||||| | || |||||||| ||| Sbjct: 412 gttgctggtttagcagcagatggcaggcaaattgtttcaaggaccaaatcagaagctgcc 471 Query: 421 aattatgaanaggt 434 | ||||||| |||| Sbjct: 472 agttatgaaaaggt 485
>ref|NM_191042.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 750 Score = 172 bits (87), Expect = 6e-40 Identities = 246/299 (82%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 1 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 60 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 ||||||||||| |||||||| ||||| ||||||||||||||||| | ||||| ||| Sbjct: 61 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcgggactgttgttggaatc 120 Query: 250 aaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgatactt 309 ||||||||||||||||| ||||| |||||||||||||| |||| || |||||||| || Sbjct: 121 aaatgcaaagatggaatcgtcctgggtgtggagaagctagtaacttcgaagatgatgctg 180 Query: 310 gccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggctgtggctggg 369 | || || || |||| | ||||| |||||| || |||||||||||||||| ||||| Sbjct: 181 gagggatctaataggaggatccattcagtgcactggcactctggcttggctgttgctggt 240 Query: 370 ttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagccaattatga 428 ||||| ||||| || ||||| || || ||||||||||| || ||||| |||| |||||| Sbjct: 241 ttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagcggccagttatga 299
>dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C12, full insert sequence Length = 1188 Score = 172 bits (87), Expect = 6e-40 Identities = 246/299 (82%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 255 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 314 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 ||||||||||| |||||||| ||||| ||||||||||||||||| | ||||| ||| Sbjct: 315 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcgggactgttgttggaatc 374 Query: 250 aaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgatactt 309 ||||||||||||||||| ||||| |||||||||||||| |||| || |||||||| || Sbjct: 375 aaatgcaaagatggaatcgtcctgggtgtggagaagctagtaacttcgaagatgatgctg 434 Query: 310 gccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggctgtggctggg 369 | || || || |||| | ||||| |||||| || |||||||||||||||| ||||| Sbjct: 435 gagggatctaataggaggatccattcagtgcactggcactctggcttggctgttgctggt 494 Query: 370 ttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagccaattatga 428 ||||| ||||| || ||||| || || ||||||||||| || ||||| |||| |||||| Sbjct: 495 ttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagcggccagttatga 553
>dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E06, full insert sequence Length = 1120 Score = 172 bits (87), Expect = 6e-40 Identities = 246/299 (82%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 188 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 247 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 ||||||||||| |||||||| ||||| ||||||||||||||||| | ||||| ||| Sbjct: 248 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcgggactgttgttggaatc 307 Query: 250 aaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgatactt 309 ||||||||||||||||| ||||| |||||||||||||| |||| || |||||||| || Sbjct: 308 aaatgcaaagatggaatcgtcctgggtgtggagaagctagtaacttcgaagatgatgctg 367 Query: 310 gccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggctgtggctggg 369 | || || || |||| | ||||| |||||| || |||||||||||||||| ||||| Sbjct: 368 gagggatctaataggaggatccattcagtgcactggcactctggcttggctgttgctggt 427 Query: 370 ttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagccaattatga 428 ||||| ||||| || ||||| || || ||||||||||| || ||||| |||| |||||| Sbjct: 428 ttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagcggccagttatga 486
>dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mRNA for alpha 7 subunit of 20S proteasome, complete cds Length = 1091 Score = 172 bits (87), Expect = 6e-40 Identities = 246/299 (82%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 151 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 210 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 ||||||||||| |||||||| ||||| ||||||||||||||||| | ||||| ||| Sbjct: 211 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcgggactgttgttggaatc 270 Query: 250 aaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgatactt 309 ||||||||||||||||| ||||| |||||||||||||| |||| || |||||||| || Sbjct: 271 aaatgcaaagatggaatcgtcctgggtgtggagaagctagtaacttcgaagatgatgctg 330 Query: 310 gccgggtcgaaccggagacttcattccgtgcaccggaactctggcttggctgtggctggg 369 | || || || |||| | ||||| |||||| || |||||||||||||||| ||||| Sbjct: 331 gagggatctaataggaggatccattcagtgcactggcactctggcttggctgttgctggt 390 Query: 370 ttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagcagccaattatga 428 ||||| ||||| || ||||| || || ||||||||||| || ||||| |||| |||||| Sbjct: 391 ttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagcggccagttatga 449
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 170 bits (86), Expect = 2e-39 Identities = 116/126 (92%) Strand = Plus / Minus Query: 109 agggcttgaagcaacttaacaatgagtagcataggaactgggtatgatctgtccgtcacc 168 |||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 48999 aggggttgaagcaacttcacaatgagtagcatagggactggttatgatctttccgtcacc 48940 Query: 169 actttctccccggacggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaac 228 || |||||||| || || |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 48939 accttctccccagatggccgtgtcttccaggttgagtatgctggcaaggccgtcgacaac 48880 Query: 229 agcggg 234 |||||| Sbjct: 48879 agcggg 48874 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 357 ggctgtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagc 416 |||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||| || Sbjct: 48291 ggctgttgctggtttagctgcggatggtaggcagatagtctctagggcaaagtcagaggc 48232 Query: 417 agccaattatgaa 429 ||||| ||||||| Sbjct: 48231 agccagttatgaa 48219 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 274 ggtgtggagaagctgataacctcaaagatgatacttgccgggtcgaaccggagacttcat 333 ||||||||||||||| |||| ||||||||||| | |||||||| |||||||| || Sbjct: 48655 ggtgtggagaagctggtaacatcaaagatgattttgaaggggtcgaatcggagactccac 48596 Query: 334 tccgtgcaccggaactctggcttgg 358 || |||||||| |||||||||||| Sbjct: 48595 tctgtgcaccgacactctggcttgg 48571 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 14 ccccaccttcttgcgccacaagccggagccg 44 ||||||||||||||||||||||||| ||||| Sbjct: 49940 ccccaccttcttgcgccacaagccgaagccg 49910 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 241 gttgggatcaaatgcaaagatggaattgtccttg 274 ||||| ||||||||||||||||| |||||||||| Sbjct: 48780 gttggcatcaaatgcaaagatgggattgtccttg 48747
>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene region Length = 58956 Score = 170 bits (86), Expect = 2e-39 Identities = 116/126 (92%) Strand = Plus / Plus Query: 109 agggcttgaagcaacttaacaatgagtagcataggaactgggtatgatctgtccgtcacc 168 |||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 31892 aggggttgaagcaacttcacaatgagtagcatagggactggttatgatctttccgtcacc 31951 Query: 169 actttctccccggacggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaac 228 || |||||||| || || |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 31952 accttctccccagatggccgtgtcttccaggttgagtatgctggcaaggccgtcgacaac 32011 Query: 229 agcggg 234 |||||| Sbjct: 32012 agcggg 32017 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 357 ggctgtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagc 416 |||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||| || Sbjct: 32603 ggctgttgctggtttagctgcggatggtaggcagatagtctctagggcaaagtcagaggc 32662 Query: 417 agccaattatgaa 429 ||||| ||||||| Sbjct: 32663 agccagttatgaa 32675 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 274 ggtgtggagaagctgataacctcaaagatgatacttgccgggtcgaaccggagacttcat 333 ||||||||||||||| |||| ||||||||||| | |||||||| |||||||| || Sbjct: 32238 ggtgtggagaagctggtaacatcaaagatgattttgaaggggtcgaatcggagactccac 32297 Query: 334 tccgtgcaccggaactctggcttgg 358 || |||||||| |||||||||||| Sbjct: 32298 tctgtgcaccgacactctggcttgg 32322 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 14 ccccaccttcttgcgccacaagccggagccg 44 ||||||||||||||||||||||||| ||||| Sbjct: 30951 ccccaccttcttgcgccacaagccgaagccg 30981 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 241 gttgggatcaaatgcaaagatggaattgtccttg 274 ||||| ||||||||||||||||| |||||||||| Sbjct: 32111 gttggcatcaaatgcaaagatgggattgtccttg 32144
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 170 bits (86), Expect = 2e-39 Identities = 116/126 (92%) Strand = Plus / Minus Query: 109 agggcttgaagcaacttaacaatgagtagcataggaactgggtatgatctgtccgtcacc 168 |||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 23980510 aggggttgaagcaacttcacaatgagtagcatagggactggttatgatctttccgtcacc 23980451 Query: 169 actttctccccggacggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaac 228 || |||||||| || || |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 23980450 accttctccccagatggccgtgtcttccaggttgagtatgctggcaaggccgtcgacaac 23980391 Query: 229 agcggg 234 |||||| Sbjct: 23980390 agcggg 23980385 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 357 ggctgtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagc 416 |||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||| || Sbjct: 23979802 ggctgttgctggtttagctgcggatggtaggcagatagtctctagggcaaagtcagaggc 23979743 Query: 417 agccaattatgaa 429 ||||| ||||||| Sbjct: 23979742 agccagttatgaa 23979730 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 274 ggtgtggagaagctgataacctcaaagatgatacttgccgggtcgaaccggagacttcat 333 ||||||||||||||| |||| ||||||||||| | |||||||| |||||||| || Sbjct: 23980166 ggtgtggagaagctggtaacatcaaagatgattttgaaggggtcgaatcggagactccac 23980107 Query: 334 tccgtgcaccggaactctggcttgg 358 || |||||||| |||||||||||| Sbjct: 23980106 tctgtgcaccgacactctggcttgg 23980082 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 14 ccccaccttcttgcgccacaagccggagccg 44 ||||||||||||||||||||||||| ||||| Sbjct: 23981451 ccccaccttcttgcgccacaagccgaagccg 23981421 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 241 gttgggatcaaatgcaaagatggaattgtccttg 274 ||||| ||||||||||||||||| |||||||||| Sbjct: 23980291 gttggcatcaaatgcaaagatgggattgtccttg 23980258
>gb|AY106224.1| Zea mays PCO088072 mRNA sequence Length = 479 Score = 157 bits (79), Expect = 4e-35 Identities = 154/179 (86%) Strand = Plus / Plus Query: 127 acaatgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacgga 186 |||||||| |||||||| || || ||||||||||| |||||||| ||||| || || || Sbjct: 235 acaatgagcagcataggcacaggttatgatctgtctgtcaccaccttctctcccgatggc 294 Query: 187 cgtgtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttggg 246 || |||||||||||||||||||| ||||| ||||||||||||||||| | |||||| Sbjct: 295 cgcgtcttccaggtcgagtatgccacgaaggctgtcgacaacagcgggaccgttgttggg 354 Query: 247 atcaaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgat 305 ||||| ||||||||||| ||||| || ||||| ||||||||| |||||||||||||||| Sbjct: 355 atcaagtgcaaagatggcattgttctgggtgtcgagaagctggtaacctcaaagatgat 413
>ref|NM_128260.3| Arabidopsis thaliana PAG1; endopeptidase/ peptidase/ threonine endopeptidase AT2G27020 (PAG1) mRNA, complete cds Length = 1024 Score = 103 bits (52), Expect = 5e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct: 119 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggccgt 178 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || |||||| ||||||| || | || || ||||||||||| ||||| | ||||| ||| Sbjct: 179 gttttccagatcgagtacgccgctaaagctgtcgacaacagtgggactgttgttggaatc 238 Query: 250 aaatgcaaagatggaattgt 269 || ||||||||||| ||||| Sbjct: 239 aagtgcaaagatgggattgt 258
>gb|AY124806.1| Arabidopsis thaliana At2g27020/T20P8.7 mRNA, complete cds Length = 750 Score = 103 bits (52), Expect = 5e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct: 1 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggccgt 60 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || |||||| ||||||| || | || || ||||||||||| ||||| | ||||| ||| Sbjct: 61 gttttccagatcgagtacgccgctaaagctgtcgacaacagtgggactgttgttggaatc 120 Query: 250 aaatgcaaagatggaattgt 269 || ||||||||||| ||||| Sbjct: 121 aagtgcaaagatgggattgt 140
>gb|AF375455.1| Arabidopsis thaliana At2g27020/T20P8.7 mRNA, complete cds Length = 935 Score = 103 bits (52), Expect = 5e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct: 34 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggccgt 93 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || |||||| ||||||| || | || || ||||||||||| ||||| | ||||| ||| Sbjct: 94 gttttccagatcgagtacgccgctaaagctgtcgacaacagtgggactgttgttggaatc 153 Query: 250 aaatgcaaagatggaattgt 269 || ||||||||||| ||||| Sbjct: 154 aagtgcaaagatgggattgt 173
>gb|AY088609.1| Arabidopsis thaliana clone 8342 mRNA, complete sequence Length = 1022 Score = 103 bits (52), Expect = 5e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct: 122 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggccgt 181 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || |||||| ||||||| || | || || ||||||||||| ||||| | ||||| ||| Sbjct: 182 gttttccagatcgagtacgccgctaaagctgtcgacaacagtgggactgttgttggaatc 241 Query: 250 aaatgcaaagatggaattgt 269 || ||||||||||| ||||| Sbjct: 242 aagtgcaaagatgggattgt 261
>gb|AF043528.1|AF043528 Arabidopsis thaliana 20S proteasome subunit PAG1 (PAG1) mRNA, complete cds Length = 958 Score = 103 bits (52), Expect = 5e-19 Identities = 118/140 (84%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct: 44 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggccgt 103 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || |||||| ||||||| || | || || ||||||||||| ||||| | ||||| ||| Sbjct: 104 gttttccagatcgagtacgccgctaaagctgtcgacaacagtgggactgttgttggaatc 163 Query: 250 aaatgcaaagatggaattgt 269 || ||||||||||| ||||| Sbjct: 164 aagtgcaaagatgggattgt 183
>emb|Y13693.1|ATY13693 Arabidopsis thaliana mRNA for proteasome subunit prc8 Length = 958 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || || Sbjct: 44 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggcggt 103 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || |||||| ||||||| || | || || ||||||||||| ||||| | ||||| ||| Sbjct: 104 gttttccagatcgagtacgccgctaaagctgtcgacaacagtgggactgttgttggaatc 163 Query: 250 aaatgcaaagatggaattgt 269 || ||||||||||| ||||| Sbjct: 164 aagtgcaaagatgggattgt 183
>dbj|D78173.1| Spinacia oleracea mRNA for 26S proteasome alpha subunit, complete cds Length = 1099 Score = 85.7 bits (43), Expect = 1e-13 Identities = 130/159 (81%) Strand = Plus / Plus Query: 129 aatgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||| ||||| ||||| || || || || || ||||| |||||||| || ||||| || Sbjct: 42 aatgagcagcatcggaacaggctacgacctttcggtcactactttctcaccagacggtcg 101 Query: 189 tgtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggat 248 || || ||| ||||||| || | ||||||||| |||||||||||||| || || || Sbjct: 102 agtttttcagatcgagtacgccgccaaggccgttgacaacagcgggactgctgtaggcat 161 Query: 249 caaatgcaaagatggaattgtccttggtgtggagaagct 287 ||||||||| ||||||||||| || |||||||||||||| Sbjct: 162 caaatgcaaggatggaattgttctgggtgtggagaagct 200
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence Length = 99345 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||| ||||||||||| ||||| ||||||||||||||||| || || || ||| Sbjct: 30333 atgagtagcattggaactgggtacgatctctccgtcaccactttctctcccgatggccgt 30274 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacag 230 || |||||| ||||||| || | || || ||||||||||| Sbjct: 30273 gttttccagatcgagtacgccgctaaagctgtcgacaacag 30233
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 34464923 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 34464982 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcggg 234 ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 34464983 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcggg 34465027 Score = 48.1 bits (24), Expect = 0.024 Identities = 60/72 (83%) Strand = Plus / Plus Query: 357 ggctgtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagc 416 |||||| ||||| ||||| ||||| || ||||| || || ||||||||||| || ||||| Sbjct: 34465581 ggctgttgctggtttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagc 34465640 Query: 417 agccaattatga 428 |||| |||||| Sbjct: 34465641 ggccagttatga 34465652 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 241 gttgggatcaaatgcaaagatggaattgtcct 272 ||||| |||||||||||||||||||| ||||| Sbjct: 34465131 gttggaatcaaatgcaaagatggaatcgtcct 34465162
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 147267 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 147326 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcggg 234 ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 147327 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcggg 147371 Score = 48.1 bits (24), Expect = 0.024 Identities = 60/72 (83%) Strand = Plus / Plus Query: 357 ggctgtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagc 416 |||||| ||||| ||||| ||||| || ||||| || || ||||||||||| || ||||| Sbjct: 147925 ggctgttgctggtttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagc 147984 Query: 417 agccaattatga 428 |||| |||||| Sbjct: 147985 ggccagttatga 147996 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 241 gttgggatcaaatgcaaagatggaattgtcct 272 ||||| |||||||||||||||||||| ||||| Sbjct: 147475 gttggaatcaaatgcaaagatggaatcgtcct 147506
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 73.8 bits (37), Expect = 4e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||| |||||||| || || || ||||||||||| ||||| ||||| ||||| || || Sbjct: 40642 atgagcagcataggcacaggatacgatctgtccgttaccaccttctctccggatggtcgc 40701 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcggg 234 ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 40702 gtcttccaggttgagtatgccacgaaggctgtcgacaacagcggg 40746 Score = 48.1 bits (24), Expect = 0.024 Identities = 60/72 (83%) Strand = Plus / Plus Query: 357 ggctgtggctgggttagcagcagacggtaggcagatagtctcaagagcaaagtcagaagc 416 |||||| ||||| ||||| ||||| || ||||| || || ||||||||||| || ||||| Sbjct: 41300 ggctgttgctggtttagctgcagatggcaggcaaattgtttcaagagcaaaatcggaagc 41359 Query: 417 agccaattatga 428 |||| |||||| Sbjct: 41360 ggccagttatga 41371 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 241 gttgggatcaaatgcaaagatggaattgtcct 272 ||||| |||||||||||||||||||| ||||| Sbjct: 40850 gttggaatcaaatgcaaagatggaatcgtcct 40881
>gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence Length = 1134 Score = 63.9 bits (32), Expect = 4e-07 Identities = 140/176 (79%) Strand = Plus / Plus Query: 130 atgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggacggacgt 189 ||||||||||||||||| || |||||||| || || || || ||||| |||||||| | Sbjct: 105 atgagtagcataggaaccggatatgatctatcggtgacgacattctcgccggacggcaga 164 Query: 190 gtcttccaggtcgagtatgctggcaaggccgtcgacaacagcgggacgatcgttgggatc 249 || || ||| |||| || || || || || ||||| ||||| || || | ||||| ||| Sbjct: 165 gtatttcagatcgaatacgccggaaaagcagtcgataacagtggtactgttgttggaatc 224 Query: 250 aaatgcaaagatggaattgtccttggtgtggagaagctgataacctcaaagatgat 305 |||||||| |||||||| ||| | || ||||||||||| ||| |||| || ||||| Sbjct: 225 aaatgcaaggatggaatcgtcttgggagtggagaagctaatagcctccaaaatgat 280
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 46.1 bits (23), Expect = 0.095 Identities = 35/39 (89%) Strand = Plus / Minus Query: 193 ttccaggtcgagtatgctggcaaggccgtcgacaacagc 231 |||||||| ||||| || |||||||| |||||||||||| Sbjct: 46754 ttccaggtggagtacgccggcaaggctgtcgacaacagc 46716
>ref|XM_842880.1| Leishmania major strain Friedlin proteasome alpha 7 subunit (LMJ_0275) partial mRNA Length = 717 Score = 46.1 bits (23), Expect = 0.095 Identities = 35/39 (89%) Strand = Plus / Plus Query: 193 ttccaggtcgagtatgctggcaaggccgtcgacaacagc 231 |||||||| ||||| || |||||||| |||||||||||| Sbjct: 64 ttccaggtggagtacgccggcaaggctgtcgacaacagc 102
>emb|AJ291738.1|NTA291738 Nicotiana tabacum mRNA for putative alpha7 proteasome subunit (a7 gene) Length = 1047 Score = 46.1 bits (23), Expect = 0.095 Identities = 86/107 (80%) Strand = Plus / Plus Query: 124 ttaacaatgagtagcataggaactgggtatgatctgtccgtcaccactttctccccggac 183 |||| |||||| ||||||||||| || ||||| | ||||| || || ||||| |||||| Sbjct: 85 ttaaaaatgagcagcataggaacaggttatgacttatccgtgacgacattctcgccggac 144 Query: 184 ggacgtgtcttccaggtcgagtatgctggcaaggccgtcgacaacag 230 || | || || ||| |||| ||||| ||||| |||||||| ||||| Sbjct: 145 ggcagagtatttcagatcgaatatgccggcaaagccgtcgataacag 191
>ref|XM_757288.1| Ustilago maydis 521 hypothetical protein (UM06234.1) partial mRNA Length = 918 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Plus Query: 172 ttctccccggacggacgtgtcttccaggtcgagtatgc 209 ||||||||||||||||| | | ||||||||||||||| Sbjct: 37 ttctccccggacggacggctgtaccaggtcgagtatgc 74
>emb|Z70232.1|HSU139A4 Human DNA sequence from clone LL0XNC01-139A4 on chromosome X, complete sequence Length = 34162 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 391 atagtctcaagagcaaagtcagaagc 416 ||||||||||||||||||||| |||| Sbjct: 9815 atagtctcaagagcaaagtcacaagc 9840
>emb|BX819273.1|CNS0A9VK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB62ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 837 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Plus Query: 220 gtcgacaacagcgggacgatcgttgggatcaaatgcaaagatggaattgt 269 ||||||||||| ||||| | ||||| ||||| ||||||||||| ||||| Sbjct: 22 gtcgacaacagtgggactgttgttggaatcaagtgcaaagatgggattgt 71
>gb|U85398.1|ACU85398 Acanthamoeba castellanii multicatalytic endopeptidase subunit C8 mRNA, partial cds Length = 898 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Plus Query: 193 ttccaggtcgagtatgctggcaaggccgtcgacaacag 230 ||||| || |||||||| | |||||||||||||||||| Sbjct: 59 ttccaagtggagtatgccgccaaggccgtcgacaacag 96
>gb|AC107710.5| Mus musculus chromosome 19, clone RP23-269K10, complete sequence Length = 188708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 tggctgtggctgggttagcag 376 ||||||||||||||||||||| Sbjct: 51813 tggctgtggctgggttagcag 51833
>gb|AC124459.5| Mus musculus BAC clone RP24-140E5 from chromosome 19, complete sequence Length = 170323 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 tggctgtggctgggttagcag 376 ||||||||||||||||||||| Sbjct: 52415 tggctgtggctgggttagcag 52395
>emb|CR722996.2|CNS0GKT6 Tetraodon nigroviridis full-length cDNA Length = 883 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 72 gggtatgacctgtcggcctccaccttctccccggacggacg 112
>emb|CR721663.2|CNS0GJS5 Tetraodon nigroviridis full-length cDNA Length = 887 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 77 gggtatgacctgtcggcctccaccttctccccggacggacg 117
>emb|CR706270.2|CNS0G7WQ Tetraodon nigroviridis full-length cDNA Length = 873 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 60 gggtatgacctgtcggcctccaccttctccccggacggacg 100
>emb|CR689985.2|CNS0FVCD Tetraodon nigroviridis full-length cDNA Length = 1464 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 82 gggtatgacctgtcggcctccaccttctccccggacggacg 122
>emb|CR684822.2|CNS0FRCY Tetraodon nigroviridis full-length cDNA Length = 1456 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 85 gggtatgacctgtcggcctccaccttctccccggacggacg 125
>emb|CR681330.2|CNS0FONY Tetraodon nigroviridis full-length cDNA Length = 902 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 91 gggtatgacctgtcggcctccaccttctccccggacggacg 131
>emb|CR680644.2|CNS0FO4W Tetraodon nigroviridis full-length cDNA Length = 888 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 77 gggtatgacctgtcggcctccaccttctccccggacggacg 117
>emb|CR673786.2|CNS0FIV4 Tetraodon nigroviridis full-length cDNA Length = 884 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 74 gggtatgacctgtcggcctccaccttctccccggacggacg 114
>emb|CR668419.2|CNS0FEQ1 Tetraodon nigroviridis full-length cDNA Length = 889 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 78 gggtatgacctgtcggcctccaccttctccccggacggacg 118
>emb|CR666902.2|CNS0FDJW Tetraodon nigroviridis full-length cDNA Length = 868 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 58 gggtatgacctgtcggcctccaccttctccccggacggacg 98
>emb|CR662254.2|CNS0F9YS Tetraodon nigroviridis full-length cDNA Length = 899 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 gggtatgatctgtccgtcaccactttctccccggacggacg 188 |||||||| ||||| | | |||| ||||||||||||||||| Sbjct: 89 gggtatgacctgtcggcctccaccttctccccggacggacg 129
>gb|AC159716.6| Mus musculus 6 BAC RP23-80P15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 239739 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 acaatgagtagcataggaactgggt 151 |||| |||||||||||||||||||| Sbjct: 197060 acaaggagtagcataggaactgggt 197084
>gb|AC152962.1| Mus musculus 6 BAC RP23-465F11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187047 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 acaatgagtagcataggaactgggt 151 |||| |||||||||||||||||||| Sbjct: 82008 acaaggagtagcataggaactgggt 82032
>ref|NM_126597.2| Arabidopsis thaliana PAA2; endopeptidase/ peptidase/ threonine endopeptidase AT2G05840 (PAA2) transcript variant AT2G05840.1 mRNA, complete cds Length = 1093 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 171 tttctccccggacggacgtgtcttccaggtcgagtatgct 210 |||||| ||||| || ||| ||||||| |||||||||||| Sbjct: 161 tttctcaccggaaggtcgtctcttccaagtcgagtatgct 200
>ref|NM_001036263.1| Arabidopsis thaliana PAA2; endopeptidase/ peptidase/ threonine endopeptidase AT2G05840 (PAA2) transcript variant AT2G05840.2 mRNA, complete cds Length = 1114 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 171 tttctccccggacggacgtgtcttccaggtcgagtatgct 210 |||||| ||||| || ||| ||||||| |||||||||||| Sbjct: 179 tttctcaccggaaggtcgtctcttccaagtcgagtatgct 218
>gb|DQ215433.1| Taeniopygia guttata clone 0058P0005A09 proteasome 28 kDa subunit-like mRNA, complete sequence Length = 933 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ttgtccttggtgtggagaag 285 |||||||||||||||||||| Sbjct: 151 ttgtccttggtgtggagaag 170
>gb|DQ215431.1| Taeniopygia guttata clone 0058P0056A11 proteasome 28 kDa subunit-like mRNA, complete sequence Length = 774 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ttgtccttggtgtggagaag 285 |||||||||||||||||||| Sbjct: 165 ttgtccttggtgtggagaag 184
>gb|DQ215430.1| Taeniopygia guttata clone 0058P0018G09 proteasome 28 kDa subunit-like mRNA, complete sequence Length = 774 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ttgtccttggtgtggagaag 285 |||||||||||||||||||| Sbjct: 178 ttgtccttggtgtggagaag 197
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 166 accactttctccccggacggacgtgtcttccaggtcgagtatgc 209 |||| |||||| | |||||| ||| | ||||||||||||||||| Sbjct: 94339 accattttctcactggacgggcgtctgttccaggtcgagtatgc 94382
>ref|XM_367205.1| Magnaporthe grisea 70-15 hypothetical protein (MG07130.4) partial mRNA Length = 738 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 172 ttctccccggacggacgtgtcttccaggtcga 203 ||||||||||| || ||| ||||||||||||| Sbjct: 43 ttctccccggaaggtcgtctcttccaggtcga 74
>gb|AY616011.1| Euprymna scolopes light organ C8 alpha proteasome subunit mRNA, complete cds Length = 1717 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 127 acaatgagtagcataggaactgggtatgatct 158 ||||||||| |||||||||||| |||||||| Sbjct: 102 acaatgagttccataggaactggatatgatct 133
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence Length = 178233 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttggtgtggagaagctgata 291 |||||||||||||||||||| Sbjct: 81677 ttggtgtggagaagctgata 81696
>ref|XM_844835.1| PREDICTED: Canis familiaris similar to ovary-specific acidic protein (LOC607964), mRNA Length = 1132 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 tcaaatgcaaagatggaatt 267 |||||||||||||||||||| Sbjct: 997 tcaaatgcaaagatggaatt 978
>emb|CR956383.8| Pig DNA sequence from clone CH242-271L5 on chromosome 17, complete sequence Length = 163007 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tctggcttggctgtggctgg 368 |||||||||||||||||||| Sbjct: 8361 tctggcttggctgtggctgg 8342
>gb|AY143829.1| Arabidopsis thaliana At2g05840/T6P5.4 mRNA, complete cds Length = 741 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 171 tttctccccggacggacgtgtcttccaggtcgagtatgct 210 |||||| ||||| || ||| ||||||| |||||||||||| Sbjct: 45 tttctcaccggaaggtcgtctcttccaagtcgagtatgct 84
>ref|XM_784278.1| PREDICTED: Strongylocentrotus purpuratus similar to proteasome alpha 3 subunit isoform 2 (LOC584419), partial mRNA Length = 593 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 252 atgcaaagatggaattgtccttggtgtggagaagct 287 |||||||||||| |||| |||||||||||||||| Sbjct: 129 atgcaaagatggtgttgtatttggtgtggagaagct 164
>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence Length = 248060 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gaactctggcttggctgtgg 364 |||||||||||||||||||| Sbjct: 94233 gaactctggcttggctgtgg 94252
>gb|AC005662.3| Arabidopsis thaliana chromosome 2 clone F13H10 map CIC11C08, complete sequence Length = 96066 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aaatgcaaagatggaattgt 269 |||||||||||||||||||| Sbjct: 13147 aaatgcaaagatggaattgt 13166
>gb|AY052679.1| Arabidopsis thaliana At2g05840/T6P5.4 mRNA, complete cds Length = 1014 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 171 tttctccccggacggacgtgtcttccaggtcgagtatgct 210 |||||| ||||| || ||| ||||||| |||||||||||| Sbjct: 104 tttctcaccggaaggtcgtctcttccaagtcgagtatgct 143
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctggcttggctgtggctggg 369 |||||||||||||||||||| Sbjct: 36876 ctggcttggctgtggctggg 36857
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttggtgtggagaagctgata 291 |||||||||||||||||||| Sbjct: 18667297 ttggtgtggagaagctgata 18667316 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 166 accactttctccccggacggacgtgtcttccaggtcgagtatgc 209 |||| |||||| | |||||| ||| | ||||||||||||||||| Sbjct: 11307981 accattttctcactggacgggcgtctgttccaggtcgagtatgc 11308024
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctggcttggctgtggctggg 369 |||||||||||||||||||| Sbjct: 19409010 ctggcttggctgtggctggg 19408991
>dbj|AK105999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H10, full insert sequence Length = 1819 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttggtgtggagaagctgata 291 |||||||||||||||||||| Sbjct: 483 ttggtgtggagaagctgata 502
>dbj|AK105736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H12, full insert sequence Length = 1810 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttggtgtggagaagctgata 291 |||||||||||||||||||| Sbjct: 474 ttggtgtggagaagctgata 493
>dbj|AK099876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111H14, full insert sequence Length = 1567 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 166 accactttctccccggacggacgtgtcttccaggtcgagtatgc 209 |||| |||||| | |||||| ||| | ||||||||||||||||| Sbjct: 751 accattttctcactggacgggcgtctgttccaggtcgagtatgc 794
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctggcttggctgtggctggg 369 |||||||||||||||||||| Sbjct: 19420286 ctggcttggctgtggctggg 19420267
>gb|AF043519.1|AF043519 Arabidopsis thaliana 20S proteasome subunit PAA2 (PAA2) mRNA, complete cds Length = 1113 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 171 tttctccccggacggacgtgtcttccaggtcgagtatgct 210 |||||| ||||| || ||| ||||||| |||||||||||| Sbjct: 161 tttctcaccggaaggtcgtctcttccaagtcgagtatgct 200
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttggtgtggagaagctgata 291 |||||||||||||||||||| Sbjct: 18826698 ttggtgtggagaagctgata 18826717 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 166 accactttctccccggacggacgtgtcttccaggtcgagtatgc 209 |||| |||||| | |||||| ||| | ||||||||||||||||| Sbjct: 11387170 accattttctcactggacgggcgtctgttccaggtcgagtatgc 11387213
>gb|AC161433.5| Mus musculus chromosome 8, clone RP23-50F12, complete sequence Length = 253440 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aacctcaaagatgatacttg 310 |||||||||||||||||||| Sbjct: 95824 aacctcaaagatgatacttg 95805
>gb|AC120785.13| Mus musculus chromosome 8, clone RP23-336P3, complete sequence Length = 238405 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aacctcaaagatgatacttg 310 |||||||||||||||||||| Sbjct: 64083 aacctcaaagatgatacttg 64102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,034,782 Number of Sequences: 3902068 Number of extensions: 3034782 Number of successful extensions: 48685 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48429 Number of HSP's gapped (non-prelim): 245 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)