ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart08e07 |
|---|---|
| Clone Library Name | barley_pub |
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 91.7 bits (226), Expect = 1e-18 Identities = 39/89 (43%), Positives = 55/89 (61%) Frame = +2 Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLQLAGNG 406 C +W VE +N+ WKT+P C YV YM+G ++ + V D+A Y S+ L +G Sbjct: 43 CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102 Query: 407 XEVWVFDIDETTLSNLPYYAXHGFGATPF 493 +VW+FD+DET LSNLPYY+ H +G F Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVF 131
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 85.5 bits (210), Expect = 7e-17 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Frame = +2 Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSXVVIDQALAYVDSLQLAGN 403 C SW LGVE N+ D+ TVPA+C+ YV Y++ S ++ DS V +A Y L L + Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111 Query: 404 GXEVWVFDIDETTLSNLPYYAXHGFG 481 VW+FD+D+T LS++PYYA +G+G Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYG 137
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 83.2 bits (204), Expect = 3e-16 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Frame = +2 Query: 227 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSXVVIDQALAYVDSLQLAGN 403 C SW LGVE N+ ++ TVPA+C+ YV Y++ S ++ DS V +A Y L L + Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116 Query: 404 GXEVWVFDIDETTLSNLPYYAXHGFG 481 VW+FD+D+T LS++PYYA +G+G Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYG 142
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 80.9 bits (198), Expect = 2e-15 Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 1/104 (0%) Frame = +2 Query: 185 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSXVVID 361 LR G G+ + V C S+ L VEAHN+R +KT+P C Y+ G FR DS V Sbjct: 28 LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87 Query: 362 QALAYVDSLQLAGNGXEVWVFDIDETTLSNLPYYAXHGFGATPF 493 QA Y ++ N ++++F ID T LSN+PYY HG+G F Sbjct: 88 QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEF 129
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 77.0 bits (188), Expect = 3e-14 Identities = 38/91 (41%), Positives = 51/91 (56%) Frame = +2 Query: 221 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLQLAG 400 V C SW L VEAHN+ ++T+P C Y+ G +R DS V QA Y L++ Sbjct: 37 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94 Query: 401 NGXEVWVFDIDETTLSNLPYYAXHGFGATPF 493 + + +VF ID T LSN+PYY HG+G F Sbjct: 95 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKF 125
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 77.0 bits (188), Expect = 3e-14 Identities = 38/91 (41%), Positives = 51/91 (56%) Frame = +2 Query: 221 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLQLAG 400 V C SW L VEAHN+ ++T+P C Y+ G +R DS V QA Y L++ Sbjct: 40 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97 Query: 401 NGXEVWVFDIDETTLSNLPYYAXHGFGATPF 493 + + +VF ID T LSN+PYY HG+G F Sbjct: 98 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKF 128
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 32.7 bits (73), Expect = 0.54 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Frame = +2 Query: 116 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 286 V+I +P S V EAVV P ++ +LG+GK G+ + ++ E + + +P Sbjct: 66 VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125 Query: 287 ASCEGYVGHYMLGSHFRRDSXVVI 358 A + +G L ++R D +I Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149
>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8| Length = 1089 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +2 Query: 245 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLQL 394 G+ +N D KT+PAS E +G+ L HF S ++I + L S L Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +2 Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 334 PL+ + ++G+G A +A DS + + N V K + EGY HY L ++ Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650 Query: 335 RRDSXVVIDQ 364 R + I+Q Sbjct: 651 RSNQDTCINQ 660
>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1081 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 262 PLI RPL+G+G A +A DS ++ + N Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,350,429 Number of Sequences: 219361 Number of extensions: 721658 Number of successful extensions: 2628 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2611 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
