ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
2dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
3gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 66 1e-07
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
7dbj|AK059034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
8ref|XM_467386.1| Oryza sativa (japonica cultivar-group), mRNA 64 4e-07
9gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, compl... 44 0.41
10gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, comple... 44 0.41
11gb|AC153558.7| Mus musculus 10 BAC RP23-367D2 (Roswell Park Canc... 42 1.6
12ref|XM_868881.1| PREDICTED: Bos taurus hypothetical protein LOC6... 42 1.6
13gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.6
14dbj|AK147963.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 42 1.6
15dbj|AK147679.1| Mus musculus cDNA, RIKEN full-length enriched li... 42 1.6
16dbj|AK148343.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 42 1.6
17dbj|AK165602.1| Mus musculus RCB-1283 B16 melanoma cDNA, RIKEN f... 42 1.6
18ref|NM_001033258.1| Mus musculus DNA segment, Chr 10, Brigham & ... 42 1.6
19gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Can... 42 1.6
20ref|NM_127393.1| Arabidopsis thaliana catalytic/ hydrolase AT2G1... 40 6.4
21gb|AY341244.1| Homo sapiens clusterin (complement lysis inhibito... 40 6.4
22gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 6.4
23gb|AF311103.5| Homo sapiens chromosome 8 clone SCb-212E3 map p21... 40 6.4
24emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 6.4
25gb|AY113164.1| Arabidopsis thaliana At2g18360/T30D6.13 mRNA, com... 40 6.4
26gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D6 map... 40 6.4
27gb|AF361631.1| Arabidopsis thaliana At2g18360/T30D6.13 mRNA, com... 40 6.4
28gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like... 40 6.4
29gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 I... 40 6.4
30gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR ... 40 6.4
31emb|BX821319.1|CNS0A969 Arabidopsis thaliana Full-length cDNA Co... 40 6.4
32gb|DQ006268.1| Homo sapiens apolipoprotein J-like (CLU) gene, ex... 40 6.4
33dbj|AB182109.1| Campylobacter coli cdtA, cdtB, cdtC genes for cy... 40 6.4
34gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosom... 40 6.4
35gb|L00974.1|HUMSP4040A Homo sapiens SP40,40 gene, exons 5-9 40 6.4 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  115 bits (58), Expect = 1e-22
 Identities = 121/142 (85%)
 Strand = Plus / Minus

                                                                            
Query: 147      atggtgaacttggtggaggcgcagaagccgctgctgcacttcctgatcaagagggccggg 206
                ||||||||||||||||| |||| |||||||||| || |||||||  | | |||||| |||
Sbjct: 25498023 atggtgaacttggtggaagcgccgaagccgctggtgtacttcctcctgaggagggcaggg 25497964

                                                                            
Query: 207      cttcggcagcacactgtggacgtggatggcgccggcacggtgctcaccttctgggtgccc 266
                || ||||||||||| || ||||| || ||||||||||||||| ||| ||||||| |||||
Sbjct: 25497963 ctccggcagcacaccgtcgacgtcgacggcgccggcacggtgatcagcttctggatgccc 25497904

                                      
Query: 267      aaggacaagctccccagggaca 288
                 ||| |||| |||||| |||||
Sbjct: 25497903 gagggcaaggtccccaaggaca 25497882



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 399      gtcgtcctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttccagg 453
                ||||| ||||||||||||||||| ||||| ||| | || ||||||||||||||||
Sbjct: 25497774 gtcgtgctcgtgcacggcttcgccgccgagggcgtcgtcacgtggcagttccagg 25497720



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 451      aggctggtgtgctggcgaagcacta 475
                |||||||||||||||||||||||||
Sbjct: 25497613 aggctggtgtgctggcgaagcacta 25497589
to top
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696E01
          Length = 194056

 Score =  115 bits (58), Expect = 1e-22
 Identities = 121/142 (85%)
 Strand = Plus / Minus

                                                                         
Query: 147   atggtgaacttggtggaggcgcagaagccgctgctgcacttcctgatcaagagggccggg 206
             ||||||||||||||||| |||| |||||||||| || |||||||  | | |||||| |||
Sbjct: 25626 atggtgaacttggtggaagcgccgaagccgctggtgtacttcctcctgaggagggcaggg 25567

                                                                         
Query: 207   cttcggcagcacactgtggacgtggatggcgccggcacggtgctcaccttctgggtgccc 266
             || ||||||||||| || ||||| || ||||||||||||||| ||| ||||||| |||||
Sbjct: 25566 ctccggcagcacaccgtcgacgtcgacggcgccggcacggtgatcagcttctggatgccc 25507

                                   
Query: 267   aaggacaagctccccagggaca 288
              ||| |||| |||||| |||||
Sbjct: 25506 gagggcaaggtccccaaggaca 25485



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 399   gtcgtcctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttccagg 453
             ||||| ||||||||||||||||| ||||| ||| | || ||||||||||||||||
Sbjct: 25377 gtcgtgctcgtgcacggcttcgccgccgagggcgtcgtcacgtggcagttccagg 25323



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 451   aggctggtgtgctggcgaagcacta 475
             |||||||||||||||||||||||||
Sbjct: 25216 aggctggtgtgctggcgaagcacta 25192
to top
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                   
Query: 146    gatggtgaacttggtggaggcgcagaagccgctgctg 182
              |||||||||||| ||||||||||||||||||||||||
Sbjct: 117897 gatggtgaacttcgtggaggcgcagaagccgctgctg 117933



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 405    ctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttc 449
              ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 118147 ctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 118191
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 146      gatggtgaacttggtggaggcgcagaagccgctgctg 182
                |||||||||||| ||||||||||||||||||||||||
Sbjct: 29244734 gatggtgaacttcgtggaggcgcagaagccgctgctg 29244698



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 405      ctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttc 449
                ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 29244484 ctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 29244440
to top
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 146   gatggtgaacttggtggaggcgcagaagccgctgctg 182
             |||||||||||| ||||||||||||||||||||||||
Sbjct: 42079 gatggtgaacttcgtggaggcgcagaagccgctgctg 42043



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 405   ctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttc 449
             ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 41829 ctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 41785
to top
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                   
Query: 146    gatggtgaacttggtggaggcgcagaagccgctgctg 182
              |||||||||||| ||||||||||||||||||||||||
Sbjct: 134702 gatggtgaacttcgtggaggcgcagaagccgctgctg 134666



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 405    ctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttc 449
              ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 134452 ctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 134408
to top
>dbj|AK059034.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C07, full
           insert sequence
          Length = 1798

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 146 gatggtgaacttggtggaggcgcagaagccgctgctg 182
           |||||||||||| ||||||||||||||||||||||||
Sbjct: 433 gatggtgaacttcgtggaggcgcagaagccgctgctg 469



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 405 ctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttc 449
           ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 683 ctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 727
to top
>ref|XM_467386.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1020

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 147 atggtgaacttggtggaggcgcagaagccgctgctg 182
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 1   atggtgaacttcgtggaggcgcagaagccgctgctg 36



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 405 ctcgtgcacggcttcgcggccgaaggcattgttacgtggcagttc 449
           ||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 250 ctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 294
to top
>gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, complete sequence
          Length = 165902

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 267    aaggacaagctccccagggaca 288
              ||||||||||||||||||||||
Sbjct: 138079 aaggacaagctccccagggaca 138100
to top
>gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, complete sequence
          Length = 75454

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 267  aaggacaagctccccagggaca 288
            ||||||||||||||||||||||
Sbjct: 9776 aaggacaagctccccagggaca 9755
to top
>gb|AC153558.7| Mus musculus 10 BAC RP23-367D2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 163   aggcgcagaagccgctgctgcactt 187
             |||||||||||| ||||||||||||
Sbjct: 75644 aggcgcagaagcagctgctgcactt 75668
to top
>ref|XM_868881.1| PREDICTED: Bos taurus hypothetical protein LOC616772 (LOC616772),
            mRNA
          Length = 1728

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 146  gatggtgaacttggtggaggcgcag 170
            |||| ||||||||||||||||||||
Sbjct: 1200 gatgttgaacttggtggaggcgcag 1224
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 171     aagccgctgctgcacttcctg 191
               |||||||||||||||||||||
Sbjct: 2675514 aagccgctgctgcacttcctg 2675494
to top
>dbj|AK147963.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270119L23 product:BIG3 homolog [Homo sapiens],
            full insert sequence
          Length = 5609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 163  aggcgcagaagccgctgctgcactt 187
            |||||||||||| ||||||||||||
Sbjct: 1502 aggcgcagaagcagctgctgcactt 1478
to top
>dbj|AK147679.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1106N20 product:BIG3 homolog [Homo sapiens],
            full insert sequence
          Length = 8215

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 163  aggcgcagaagccgctgctgcactt 187
            |||||||||||| ||||||||||||
Sbjct: 1507 aggcgcagaagcagctgctgcactt 1483
to top
>dbj|AK148343.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370100P12 product:BIG3 homolog [Homo sapiens],
            full insert sequence
          Length = 5689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 163  aggcgcagaagccgctgctgcactt 187
            |||||||||||| ||||||||||||
Sbjct: 1451 aggcgcagaagcagctgctgcactt 1427
to top
>dbj|AK165602.1| Mus musculus RCB-1283 B16 melanoma cDNA, RIKEN full-length enriched
            library, clone:G430043E17 product:BIG3 homolog [Homo
            sapiens], full insert sequence
          Length = 6177

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 163  aggcgcagaagccgctgctgcactt 187
            |||||||||||| ||||||||||||
Sbjct: 1448 aggcgcagaagcagctgctgcactt 1424
to top
>ref|NM_001033258.1| Mus musculus DNA segment, Chr 10, Brigham & Women's Genetics 1379
            expressed (D10Bwg1379e), mRNA
          Length = 8215

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 163  aggcgcagaagccgctgctgcactt 187
            |||||||||||| ||||||||||||
Sbjct: 1507 aggcgcagaagcagctgctgcactt 1483
to top
>gb|AC153561.5| Mus musculus 10 BAC RP23-426E11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228734

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 163    aggcgcagaagccgctgctgcactt 187
              |||||||||||| ||||||||||||
Sbjct: 224291 aggcgcagaagcagctgctgcactt 224315
to top
>ref|NM_127393.1| Arabidopsis thaliana catalytic/ hydrolase AT2G18360 mRNA, complete
           cds
          Length = 1234

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 414 ggcttcgcggccgaaggcattgttacgtggcagttccagg 453
           ||||| || |||||||| || || ||||||||||||||||
Sbjct: 364 ggctttgcagccgaagggatcgtgacgtggcagttccagg 403
to top
>gb|AY341244.1| Homo sapiens clusterin (complement lysis inhibitor, SP-40,40,
            sulfated glycoprotein 2, testosterone-repressed prostate
            message 2, apolipoprotein J) (CLU) gene, complete cds
          Length = 15440

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   tgcccatgctggctgtccca 67
            ||||||||||||||||||||
Sbjct: 7130 tgcccatgctggctgtccca 7149
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 404     cctcgtgcacggcttcgcggccgaaggc 431
               ||||| ||||| ||||||||||||||||
Sbjct: 1773951 cctcgggcacgacttcgcggccgaaggc 1773924
to top
>gb|AF311103.5| Homo sapiens chromosome 8 clone SCb-212E3 map p21-p11, complete sequence
          Length = 234429

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     tgcccatgctggctgtccca 67
              ||||||||||||||||||||
Sbjct: 215239 tgcccatgctggctgtccca 215220
to top
>emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 8/10
          Length = 286850

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    tgagatcacgcccgaagcgg 321
              ||||||||||||||||||||
Sbjct: 213075 tgagatcacgcccgaagcgg 213056
to top
>gb|AY113164.1| Arabidopsis thaliana At2g18360/T30D6.13 mRNA, complete cds
          Length = 942

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 414 ggcttcgcggccgaaggcattgttacgtggcagttccagg 453
           ||||| || |||||||| || || ||||||||||||||||
Sbjct: 208 ggctttgcagccgaagggatcgtgacgtggcagttccagg 247
to top
>gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete
             sequence
          Length = 92861

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 414   ggcttcgcggccgaaggcattgttacgtggcagttccagg 453
             ||||| || |||||||| || || ||||||||||||||||
Sbjct: 36451 ggctttgcagccgaagggatcgtgacgtggcagttccagg 36490
to top
>gb|AF361631.1| Arabidopsis thaliana At2g18360/T30D6.13 mRNA, complete cds
          Length = 1235

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 414 ggcttcgcggccgaaggcattgttacgtggcagttccagg 453
           ||||| || |||||||| || || ||||||||||||||||
Sbjct: 364 ggctttgcagccgaagggatcgtgacgtggcagttccagg 403
to top
>gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like element transposase gene,
            partial cds; and fibroin gene, complete cds
          Length = 9921

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  gccgctgctgcacttcctga 192
            ||||||||||||||||||||
Sbjct: 8858 gccgctgctgcacttcctga 8839
to top
>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region,
             complete sequence
          Length = 145356

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   ccaggctggtgtgctggcga 468
             ||||||||||||||||||||
Sbjct: 74309 ccaggctggtgtgctggcga 74328
to top
>gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete
              sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    ccaggctggtgtgctggcga 468
              ||||||||||||||||||||
Sbjct: 188392 ccaggctggtgtgctggcga 188411
to top
>emb|BX821319.1|CNS0A969 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL33ZG04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1065

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 414 ggcttcgcggccgaaggcattgttacgtggcagttccagg 453
           ||||| || |||||||| || || ||||||||||||||||
Sbjct: 200 ggctttgcagccgaagggatcgtgacgtggcagttccagg 239
to top
>gb|DQ006268.1| Homo sapiens apolipoprotein J-like (CLU) gene, exon 5
          Length = 417

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tgcccatgctggctgtccca 67
           ||||||||||||||||||||
Sbjct: 407 tgcccatgctggctgtccca 388
to top
>dbj|AB182109.1| Campylobacter coli cdtA, cdtB, cdtC genes for cytolethal distending
            toxin A, cytolethal distending toxin B, cytolethal
            distending toxin C, complete cds
          Length = 3600

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  atagccacaccaaagctaag 383
            ||||||||||||||||||||
Sbjct: 3395 atagccacaccaaagctaag 3414
to top
>gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosome 13, complete
             sequence
          Length = 152221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   gttccaggctggtgtgctgg 465
             ||||||||||||||||||||
Sbjct: 75590 gttccaggctggtgtgctgg 75609
to top
>gb|L00974.1|HUMSP4040A Homo sapiens SP40,40 gene, exons 5-9
          Length = 8133

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  tgcccatgctggctgtccca 67
           ||||||||||||||||||||
Sbjct: 499 tgcccatgctggctgtccca 518


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,463,337
Number of Sequences: 3902068
Number of extensions: 3463337
Number of successful extensions: 71456
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71207
Number of HSP's gapped (non-prelim): 249
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top