ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY228552.1| Hordeum vulgare agmatine coumaroyltransferase (ACT) mRNA, complete cds Length = 1508 Score = 844 bits (426), Expect = 0.0 Identities = 438/442 (99%) Strand = Plus / Plus Query: 39 catgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgt 98 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct: 7 catgaagatcaccgtgcactcttccaaggccgtcaagcccgagtacggcgcctgcggcct 66 Query: 99 cgctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcga 158 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 cgctccggggtgtaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcga 126 Query: 159 cacgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcga 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 127 cacgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgttctcga 186 Query: 219 ggccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcga 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 ggccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcga 246 Query: 279 cgccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgac 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 cgccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgac 306 Query: 339 ggccgacgtggcgctcgacagcgtcatgccgctcaagcccacgtcggaggttctcagcct 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 ggccgacgtggcgctcgacagcgtcatgccgctcaagcccacgtcggaggttctcagcct 366 Query: 399 gcaccccagcggcgacgacgggccagaggagctcatgctaatccaggtcacgcggttcgc 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 gcaccccagcggcgacgacgggccagaggagctcatgctaatccaggtcacgcggttcgc 426 Query: 459 gtgcgggtcgctcgtcgtgggg 480 |||||||||||||||||||||| Sbjct: 427 gtgcgggtcgctcgtcgtgggg 448
>dbj|AK109743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence Length = 1640 Score = 307 bits (155), Expect = 2e-80 Identities = 316/369 (85%), Gaps = 3/369 (0%) Strand = Plus / Plus Query: 111 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 170 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 175 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 234 Query: 171 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 230 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 235 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 294 Query: 231 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgacgccagcggcgg 290 || |||||| | || |||||||||||||| ||||| |||||||| |||| | |||| Sbjct: 295 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 354 Query: 291 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 350 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 355 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 414 Query: 351 gctcgacagcgtcatgccgctcaagcccacgtcggaggttctcagcctgcaccccagcgg 410 ||| |||||||| |||||||| ||||| ||| ||||||| || ||||||||||| ||||| Sbjct: 415 gctggacagcgtgatgccgctgaagccgacggcggaggtgctgagcctgcacccgagcgg 474 Query: 411 cgacgacgggccagaggagctcatgctaatccaggtcacgcggttcgcgtgcgggtcgct 470 |||||||| | | |||||| ||||| |||||||||||||||||||||||||| || || Sbjct: 475 cgacgacg---cggtggagctgatgctcatccaggtcacgcggttcgcgtgcggctccct 531 Query: 471 cgtcgtggg 479 ||||||||| Sbjct: 532 cgtcgtggg 540 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 38 acatgaagatcaccgtgcactcgtccaaggccgtcaagcc 77 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 105 acatgaagatcaccgtgcactcatccaaggccgtcaagcc 144
>gb|AY234333.1| Triticum aestivum putative agmatine coumaroyltransferase mRNA, partial cds Length = 1220 Score = 276 bits (139), Expect = 6e-71 Identities = 172/183 (93%) Strand = Plus / Plus Query: 298 atcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggcgctcgac 357 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 1 atcctgctcaacgacgccggcgcgcggttcgtggaggcgacggccgacgtagcgctcgac 60 Query: 358 agcgtcatgccgctcaagcccacgtcggaggttctcagcctgcaccccagcggcgacgac 417 |||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||| Sbjct: 61 agcgtcatgccgctcaagcccacgccggaggtgctgagcctgcaccccaacggcgacgac 120 Query: 418 gggccagaggagctcatgctaatccaggtcacgcggttcgcgtgcgggtcgctcgtcgtg 477 ||||| |||||||| ||||| |||||||||||||| ||| |||||||||||||||||||| Sbjct: 121 gggcccgaggagctgatgctgatccaggtcacgcgcttcccgtgcgggtcgctcgtcgtg 180 Query: 478 ggg 480 ||| Sbjct: 181 ggg 183
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 246 bits (124), Expect = 6e-62 Identities = 256/300 (85%) Strand = Plus / Plus Query: 111 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 170 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 10323 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 10382 Query: 171 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 230 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 10383 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 10442 Query: 231 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgacgccagcggcgg 290 || |||||| | || |||||||||||||| ||||| |||||||| |||| | |||| Sbjct: 10443 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 10502 Query: 291 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 350 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 10503 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 10562 Query: 351 gctcgacagcgtcatgccgctcaagcccacgtcggaggttctcagcctgcaccccagcgg 410 ||| |||||||| |||||||| ||||| ||| ||||||| || ||||||||||| ||||| Sbjct: 10563 gctggacagcgtgatgccgctgaagccgacggcggaggtgctgagcctgcacccgagcgg 10622 Score = 194 bits (98), Expect = 2e-46 Identities = 274/332 (82%), Gaps = 3/332 (0%) Strand = Plus / Minus Query: 40 atgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgtc 99 ||||||||||| ||||| || ||||||||||| ||||| | |||||||| | || | | Sbjct: 15236 atgaagatcacggtgcattcatccaaggccgtgaagccggtgtacggcgacgccgtggcc 15177 Query: 100 gctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgac 159 |||||| | |||||||||||| || ||||||| ||| |||||| ||| ||||| ||| Sbjct: 15176 gctccgag---caccgccgacgttgtgccgctcagtgtgttcgacagggcgaactttgac 15120 Query: 160 acgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgag 219 |||||| |||| || || |||||||||| | ||||||| ||| ||||| ||||||||||| Sbjct: 15119 acgtacgtctccgtcatatacgccttccgcccgccggctccggccaactccgtcctcgag 15060 Query: 220 gccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgac 279 || || || | || ||||||| || |||||||||||||| || || |||||||| || Sbjct: 15059 gcgggcctcgccaaggcgctggccgagtaccgcgagtgggcgggccgcctcggcgtggat 15000 Query: 280 gccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacg 339 | | ||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 14999 ggcgacggcgaccgcgccatcctgctcaacgacgcgggcgcgcggttcgtcgaggcgacg 14940 Query: 340 gccgacgtggcgctcgacagcgtcatgccgct 371 ||||||||| |||| ||||||||| ||||||| Sbjct: 14939 gccgacgtgacgctggacagcgtcgtgccgct 14908 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 38 acatgaagatcaccgtgcactcgtccaaggccgtcaagcc 77 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 10253 acatgaagatcaccgtgcactcatccaaggccgtcaagcc 10292 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 440 tccaggtcacgcggttcgcgtgcgggtcgctcgtcgtggg 479 |||||||||||||||||||||||||||| |||| |||||| Sbjct: 14833 tccaggtcacgcggttcgcgtgcgggtccctcgccgtggg 14794
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 246 bits (124), Expect = 6e-62 Identities = 256/300 (85%) Strand = Plus / Plus Query: 111 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 170 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 33959426 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 33959485 Query: 171 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 230 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 33959486 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 33959545 Query: 231 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgacgccagcggcgg 290 || |||||| | || |||||||||||||| ||||| |||||||| |||| | |||| Sbjct: 33959546 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 33959605 Query: 291 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 350 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 33959606 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 33959665 Query: 351 gctcgacagcgtcatgccgctcaagcccacgtcggaggttctcagcctgcaccccagcgg 410 ||| |||||||| |||||||| ||||| ||| ||||||| || ||||||||||| ||||| Sbjct: 33959666 gctggacagcgtgatgccgctgaagccgacggcggaggtgctgagcctgcacccgagcgg 33959725 Score = 194 bits (98), Expect = 2e-46 Identities = 274/332 (82%), Gaps = 3/332 (0%) Strand = Plus / Minus Query: 40 atgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgtc 99 ||||||||||| ||||| || ||||||||||| ||||| | |||||||| | || | | Sbjct: 33964339 atgaagatcacggtgcattcatccaaggccgtgaagccggtgtacggcgacgccgtggcc 33964280 Query: 100 gctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgac 159 |||||| | |||||||||||| || ||||||| ||| |||||| ||| ||||| ||| Sbjct: 33964279 gctccgag---caccgccgacgttgtgccgctcagtgtgttcgacagggcgaactttgac 33964223 Query: 160 acgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgag 219 |||||| |||| || || |||||||||| | ||||||| ||| ||||| ||||||||||| Sbjct: 33964222 acgtacgtctccgtcatatacgccttccgcccgccggctccggccaactccgtcctcgag 33964163 Query: 220 gccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgac 279 || || || | || ||||||| || |||||||||||||| || || |||||||| || Sbjct: 33964162 gcgggcctcgccaaggcgctggccgagtaccgcgagtgggcgggccgcctcggcgtggat 33964103 Query: 280 gccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacg 339 | | ||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 33964102 ggcgacggcgaccgcgccatcctgctcaacgacgcgggcgcgcggttcgtcgaggcgacg 33964043 Query: 340 gccgacgtggcgctcgacagcgtcatgccgct 371 ||||||||| |||| ||||||||| ||||||| Sbjct: 33964042 gccgacgtgacgctggacagcgtcgtgccgct 33964011 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 38 acatgaagatcaccgtgcactcgtccaaggccgtcaagcc 77 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 33959356 acatgaagatcaccgtgcactcatccaaggccgtcaagcc 33959395 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 440 tccaggtcacgcggttcgcgtgcgggtcgctcgtcgtggg 479 |||||||||||||||||||||||||||| |||| |||||| Sbjct: 33963936 tccaggtcacgcggttcgcgtgcgggtccctcgccgtggg 33963897 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cggcgcccggttcgtggagg 334 |||||||||||||||||||| Sbjct: 30995995 cggcgcccggttcgtggagg 30996014
>ref|XM_474243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 224 bits (113), Expect = 2e-55 Identities = 236/277 (85%) Strand = Plus / Plus Query: 111 caccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgacacgtacatctc 170 ||||| ||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 69 caccggcgacgtcgtcccgctcaaagtgttcgacaaggcgaactttgacacgtacatctc 128 Query: 171 ggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgaggccgggctggg 230 |||||| ||||||| || | | ||||| ||| ||||||||| ||||||||| ||||| | Sbjct: 129 ggtgatatacgcctaccgcccaccggctccggccaacgccgccctcgaggcggggctcgc 188 Query: 231 cagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgacgccagcggcgg 290 || |||||| | || |||||||||||||| ||||| |||||||| |||| | |||| Sbjct: 189 caaggcgctgatcgagtaccgcgagtgggcagggcgcctcggcgtggacggcgacggcaa 248 Query: 291 ccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacggccgacgtggc 350 |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| | Sbjct: 249 ccgcgccatcctgctcaacgacgggggcgcgcggttcgtcgaggcgacggccgacgtgac 308 Query: 351 gctcgacagcgtcatgccgctcaagcccacgtcggag 387 ||| |||||||| |||||||| ||||| ||| ||||| Sbjct: 309 gctggacagcgtgatgccgctgaagccgacggcggag 345 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 40 atgaagatcaccgtgcactcgtccaaggccgtcaagcc 77 |||||||||||||||||||| ||||||||||||||||| Sbjct: 1 atgaagatcaccgtgcactcatccaaggccgtcaagcc 38
>ref|XM_474244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 194 bits (98), Expect = 2e-46 Identities = 274/332 (82%), Gaps = 3/332 (0%) Strand = Plus / Plus Query: 40 atgaagatcaccgtgcactcgtccaaggccgtcaagcccgagtacggcgcctgcggcgtc 99 ||||||||||| ||||| || ||||||||||| ||||| | |||||||| | || | | Sbjct: 1 atgaagatcacggtgcattcatccaaggccgtgaagccggtgtacggcgacgccgtggcc 60 Query: 100 gctccggggtgcaccgccgacgtcgtcccgctcaccgtgctcgacaaggccaacttcgac 159 |||||| | |||||||||||| || ||||||| ||| |||||| ||| ||||| ||| Sbjct: 61 gctccgag---caccgccgacgttgtgccgctcagtgtgttcgacagggcgaactttgac 117 Query: 160 acgtacatctcggtgatctacgccttccacgcgccggcgccgcccaacgccgtcctcgag 219 |||||| |||| || || |||||||||| | ||||||| ||| ||||| ||||||||||| Sbjct: 118 acgtacgtctccgtcatatacgccttccgcccgccggctccggccaactccgtcctcgag 177 Query: 220 gccgggctgggcagagcgctggtggactaccgcgagtgggccgggcggctcggcgtcgac 279 || || || | || ||||||| || |||||||||||||| || || |||||||| || Sbjct: 178 gcgggcctcgccaaggcgctggccgagtaccgcgagtgggcgggccgcctcggcgtggat 237 Query: 280 gccagcggcggccgcgcgatcctgctcaacgacgccggcgcccggttcgtggaggcgacg 339 | | ||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 238 ggcgacggcgaccgcgccatcctgctcaacgacgcgggcgcgcggttcgtcgaggcgacg 297 Query: 340 gccgacgtggcgctcgacagcgtcatgccgct 371 ||||||||| |||| ||||||||| ||||||| Sbjct: 298 gccgacgtgacgctggacagcgtcgtgccgct 329 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 440 tccaggtcacgcggttcgcgtgcgggtcgctcgtcgtggg 479 |||||||||||||||||||||||||||| |||| |||||| Sbjct: 404 tccaggtcacgcggttcgcgtgcgggtccctcgccgtggg 443
>ref|XM_469315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 247 taccgcgagtgggccgggcggctcggcgtcg 277 ||||| |||||||| |||||||||||||||| Sbjct: 196 taccgggagtgggcggggcggctcggcgtcg 226
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 247 taccgcgagtgggccgggcggctcggcgtcg 277 ||||| |||||||| |||||||||||||||| Sbjct: 26917547 taccgggagtgggcggggcggctcggcgtcg 26917577 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 cgcgccggcgccgcccaacgccgtc 213 ||||||||||||||||| ||||||| Sbjct: 33017271 cgcgccggcgccgcccaccgccgtc 33017247
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 247 taccgcgagtgggccgggcggctcggcgtcg 277 ||||| |||||||| |||||||||||||||| Sbjct: 96547 taccgggagtgggcggggcggctcggcgtcg 96577
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 258 ggccgggcggctcggcgtcgacg 280 ||||||||||||||||||||||| Sbjct: 4293770 ggccgggcggctcggcgtcgacg 4293748 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 gggccgggcggctcggcgtc 276 |||||||||||||||||||| Sbjct: 934434 gggccgggcggctcggcgtc 934453
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 247 taccgcgagtgggccgggcggctcggcgtcg 277 ||||| |||||||| |||||||||||||||| Sbjct: 27008870 taccgggagtgggcggggcggctcggcgtcg 27008900 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 cgcgccggcgccgcccaacgccgtc 213 ||||||||||||||||| ||||||| Sbjct: 33107781 cgcgccggcgccgcccaccgccgtc 33107757
>dbj|D37772.1|MEAL1 Measles virus mRNA for RNA dependent RNA poymerase, complete cds Length = 6597 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 136 gtgctcgacaaggccaacttcg 157 |||||||||||||||||||||| Sbjct: 5510 gtgctcgacaaggccaacttcg 5489
>ref|NM_185045.1| Oryza sativa (japonica cultivar-group), mRNA Length = 246 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 cgcgccggcgccgcccaacgccgtc 213 ||||||||||||||||| ||||||| Sbjct: 114 cgcgccggcgccgcccaccgccgtc 90
>ref|XM_450191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1359 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 446 tcacgcggttcgcgtgcgggtcgct 470 ||||||||||||||||||| ||||| Sbjct: 404 tcacgcggttcgcgtgcggctcgct 428
>ref|XM_463664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 1117 gcgtcgacgccagcgacggccgcgc 1093
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 gcggcggccgcgcgatcctgc 304 ||||||||||||||||||||| Sbjct: 1047623 gcggcggccgcgcgatcctgc 1047643
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 4595 gcgtcgacgccagcgacggccgcgc 4571
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0028G07, complete sequence Length = 157463 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 90912 gcgtcgacgccagcgacggccgcgc 90888
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 gcggcggccgcgcgatcctgc 304 ||||||||||||||||||||| Sbjct: 2518137 gcggcggccgcgcgatcctgc 2518117
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 132 caccgtgctcgacaaggccaacttcgaca 160 ||||||| |||||||||||||| |||||| Sbjct: 1386943 caccgtgatcgacaaggccaacctcgaca 1386915
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 cgtcgacgccagcggcggccgcgcg 297 |||||||||| |||||||||||||| Sbjct: 289725 cgtcgacgccggcggcggccgcgcg 289749
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 gcggcggccgcgcgatcctgc 304 ||||||||||||||||||||| Sbjct: 1864512 gcggcggccgcgcgatcctgc 1864532
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 17496898 gcgtcgacgccagcgacggccgcgc 17496874
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 446 tcacgcggttcgcgtgcgggtcgct 470 ||||||||||||||||||| ||||| Sbjct: 21162711 tcacgcggttcgcgtgcggctcgct 21162735
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 40502991 gcgtcgacgccagcgacggccgcgc 40502967
>gb|AC107307.3| Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158066 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 cagaggagctcatgctaatcc 442 ||||||||||||||||||||| Sbjct: 27329 cagaggagctcatgctaatcc 27309
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 64615 gcgtcgacgccagcgacggccgcgc 64591
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 cgcgccggcgccgcccaacgccgtc 213 ||||||||||||||||| ||||||| Sbjct: 106037 cgcgccggcgccgcccaccgccgtc 106061
>gb|AE005009.1| Halobacterium sp. NRC-1 section 40 of 170 of the complete genome Length = 10525 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 ggcgtcgacgccagcggcggccgcg 295 |||||||||||| |||||||||||| Sbjct: 1456 ggcgtcgacgcccgcggcggccgcg 1480
>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full insert sequence Length = 1507 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 tccaggtcacgcggttcgcgtgcgg 464 |||||||||||| |||||||||||| Sbjct: 528 tccaggtcacgcagttcgcgtgcgg 552
>dbj|AK108023.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A05, full insert sequence Length = 671 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 cgcgccggcgccgcccaacgccgtc 213 ||||||||||||||||| ||||||| Sbjct: 259 cgcgccggcgccgcccaccgccgtc 235
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 446 tcacgcggttcgcgtgcgggtcgct 470 ||||||||||||||||||| ||||| Sbjct: 33468 tcacgcggttcgcgtgcggctcgct 33492
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 gcggcggccgcgcgatcctgc 304 ||||||||||||||||||||| Sbjct: 2618526 gcggcggccgcgcgatcctgc 2618546
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 gcgtcgacgccagcggcggccgcgc 296 ||||||||||||||| ||||||||| Sbjct: 17590608 gcgtcgacgccagcgacggccgcgc 17590584
>ref|XM_473852.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1200 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cggcgcccggttcgtggagg 334 |||||||||||||||||||| Sbjct: 324 cggcgcccggttcgtggagg 343
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cgggcggctcggcgtcgacg 280 |||||||||||||||||||| Sbjct: 1168180 cgggcggctcggcgtcgacg 1168199
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 tcgtggaggcgacggccgac 345 |||||||||||||||||||| Sbjct: 1441682 tcgtggaggcgacggccgac 1441701
>gb|AY224543.1| Oryza sativa (japonica cultivar-group) isolate 23485 coproporphyrinogen III oxidase mRNA, partial cds Length = 975 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cggcgcccggttcgtggagg 334 |||||||||||||||||||| Sbjct: 99 cggcgcccggttcgtggagg 118
>ref|XM_838295.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1212) partial mRNA Length = 1743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cgggcggctcggcgtcgacg 280 |||||||||||||||||||| Sbjct: 751 cgggcggctcggcgtcgacg 732
>ref|XM_382664.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02488.1) partial mRNA Length = 1470 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 gtcgacatgaagatcaccgtgcac 57 ||||| |||||||||||||||||| Sbjct: 708 gtcgagatgaagatcaccgtgcac 685
>gb|AF222421.1| Simicratea welwitschii 26S ribosomal RNA gene, partial sequence Length = 921 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ctccggggtgcaccgccgac 120 |||||||||||||||||||| Sbjct: 716 ctccggggtgcaccgccgac 735
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gctcgacagcgtcatgccgc 370 |||||||||||||||||||| Sbjct: 3372941 gctcgacagcgtcatgccgc 3372960
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cggcgcccggttcgtggagg 334 |||||||||||||||||||| Sbjct: 93368 cggcgcccggttcgtggagg 93387
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gctcgacagcgtcatgccgc 370 |||||||||||||||||||| Sbjct: 5783143 gctcgacagcgtcatgccgc 5783162
>gb|AE005704.1| Caulobacter crescentus CB15 section 30 of 359 of the complete genome Length = 9704 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 gccagcggcggccgcgcgatcctg 303 |||||||||||| ||||||||||| Sbjct: 3912 gccagcggcggcggcgcgatcctg 3889
>gb|AC106786.2| Homo sapiens chromosome 5 clone RP11-359P5, complete sequence Length = 107238 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 gcggctcggcgtcgacgccagcggcggc 291 ||||||||||| ||||| |||||||||| Sbjct: 67711 gcggctcggcggcgacggcagcggcggc 67684
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cggcgtcgacgccagcggcg 289 |||||||||||||||||||| Sbjct: 22749431 cggcgtcgacgccagcggcg 22749412
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 gcgtcgacgccagcggcggccgcg 295 ||||||||||||||||||| |||| Sbjct: 4906010 gcgtcgacgccagcggcggacgcg 4906033
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 257 gggccgggcggctcggcgt-cgacgccagcgg 287 ||||||||||||||||||| || ||||||||| Sbjct: 3355785 gggccgggcggctcggcgtgcggcgccagcgg 3355754
>gb|AC008548.6| Homo sapiens chromosome 5 clone CTC-505D13, complete sequence Length = 116730 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 gcggctcggcgtcgacgccagcggcggc 291 ||||||||||| ||||| |||||||||| Sbjct: 6851 gcggctcggcggcgacggcagcggcggc 6824
>gb|AF272899.1|AF272899 Homo sapiens PR-domain zinc finger protein 6 isoform B (PRDM6) mRNA, partial cds; alternatively spliced Length = 2374 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 gcggctcggcgtcgacgccagcggcggc 291 ||||||||||| ||||| |||||||||| Sbjct: 433 gcggctcggcggcgacggcagcggcggc 406
>gb|AF272898.1|AF272898 Homo sapiens PR-domain zinc finger protein 6 isoform A (PRDM6) mRNA, partial cds; alternatively spliced Length = 2627 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 gcggctcggcgtcgacgccagcggcggc 291 ||||||||||| ||||| |||||||||| Sbjct: 433 gcggctcggcggcgacggcagcggcggc 406
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 caacgccgtcctcgaggccg 223 |||||||||||||||||||| Sbjct: 1150049 caacgccgtcctcgaggccg 1150068
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tcgccgtcgacatgaagatc 48 |||||||||||||||||||| Sbjct: 3076078 tcgccgtcgacatgaagatc 3076059
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cggcgtcgacgccagcggcg 289 |||||||||||||||||||| Sbjct: 36382 cggcgtcgacgccagcggcg 36363
>dbj|AK070391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L08, full insert sequence Length = 1164 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cggcgcccggttcgtggagg 334 |||||||||||||||||||| Sbjct: 60 cggcgcccggttcgtggagg 79 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,535,287 Number of Sequences: 3902068 Number of extensions: 2535287 Number of successful extensions: 62864 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 59632 Number of HSP's gapped (non-prelim): 3232 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
