ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDLI2_RAT (Q6AYD6) PDZ and LIM domain protein 2 32 0.38
2FCA_ARATH (O04425) Flowering time control protein FCA 28 5.5
3ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) 28 7.2
4PUR4_PASMU (Q9CLW4) Phosphoribosylformylglycinamidine synthase (... 28 7.2
5SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2 28 7.2
6PE2R4_RABIT (Q28691) Prostaglandin E2 receptor, EP4 subtype (Pro... 27 9.4

>PDLI2_RAT (Q6AYD6) PDZ and LIM domain protein 2|
          Length = 349

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 22/42 (52%), Positives = 23/42 (54%)
 Frame = +3

Query: 12  TSQQARSERGESKSQDSTFLALLSAPGRAQDTRYPSLPRLSS 137
           TSQQA    G S   DST   LL +PGR      PS PRLSS
Sbjct: 179 TSQQA----GHSSPSDSTVRVLLHSPGR------PSSPRLSS 210



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>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 18  QQARSERGESKSQDSTFLALLSAPGRAQDTRYPSLP 125
           QQ + +    + Q   + +L   PG + +T+YPSLP
Sbjct: 659 QQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLP 694



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>ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)|
          Length = 738

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 39  GESKSQDSTFLALLSAPGRAQDTRYPSLPRL 131
           G  K   + F+  L  PGR+ + + P +PRL
Sbjct: 570 GLGKGSTAIFIVKLGIPGRSNEPKLPFMPRL 600



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>PUR4_PASMU (Q9CLW4) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1297

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 33  ERGESKSQDSTFLALLSAPGRAQDTRYPSLPRLSSYLGRGELLL 164
           E GE K+  +    ++SA  R +D R    P+L +  G   LLL
Sbjct: 787 ENGEQKTVTAPLSLVISAFARVEDVRKTVTPQLRTDKGHSRLLL 830



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>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2|
          Length = 306

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +1

Query: 61  RLSSRCSPLQAARRTHATPPSPAFRRTSAE----ASCF*HAGRQRVCCA 195
           R S R  P Q       T   PA R  ++E    ASC   AGR R CCA
Sbjct: 137 RPSGRTPPAQLRSPWPMTAAGPASRARASETGSTASC---AGRWRTCCA 182



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>PE2R4_RABIT (Q28691) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, subtype EP4)
          Length = 488

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 6   IHTSQQARSERGESKSQDSTFLALLSAPGRAQDTRYPSLPRLSSYLGR 149
           +H     R+  G  +   +   A+ SA  R   T  P+LPRLS +  R
Sbjct: 213 MHRQFMRRTSLGTEQHHAAAAAAVTSAACRGHPTASPALPRLSDFRRR 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,447,249
Number of Sequences: 219361
Number of extensions: 518707
Number of successful extensions: 1739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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