ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08d07 |
|---|---|
| Clone Library Name | barley_pub |
>Y326_METJA (Q57772) Hypothetical protein MJ0326| Length = 436 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Frame = +1 Query: 154 YFKLEARKSSFTKELRAGAATFLTMAYIISVNAAILTDSG---GPCTVLDCTPAGNSTAA 324 YF+ E ++ E AG TF+TMAYII VN IL+ +G G V C + +T Sbjct: 9 YFEFEKYGTNLKVETLAGITTFMTMAYIIFVNPQILSTAGMDFGAVMVATCIASAIATLV 68 Query: 325 PG 330 G Sbjct: 69 MG 70
>YGFQ_ECOLI (Q46817) Hypothetical protein ygfQ| Length = 455 Score = 36.6 bits (83), Expect = 0.041 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +1 Query: 154 YFKLEARKSSFTKELRAGAATFLTMAYIISVNAAILTDSGGP---CTVLDCTPAG 309 YFK+ AR S+ +E+ AG TFL M Y + V +L +G P V C AG Sbjct: 21 YFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAG 75
>YICO_ECOLI (P31440) Inner membrane protein yicO| Length = 470 Score = 34.7 bits (78), Expect = 0.16 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = +1 Query: 157 FKLEARKSSFTKELRAGAATFLTMAYIISVNAAIL 261 FKL ++ EL AG TFLTM YI+ VN IL Sbjct: 46 FKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQIL 80
>YIEG_ECOLI (P31466) Inner membrane protein yieG| Length = 445 Score = 33.9 bits (76), Expect = 0.27 Identities = 18/39 (46%), Positives = 23/39 (58%) Frame = +1 Query: 157 FKLEARKSSFTKELRAGAATFLTMAYIISVNAAILTDSG 273 FKL ++ E+ AG TFLTM YI+ VN IL +G Sbjct: 19 FKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAG 57
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 33.5 bits (75), Expect = 0.35 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = -2 Query: 359 GLDAPSMHSGPGAAV-ELPAGVQSSTVHGPPESVRMAALTEMMYAMVRK-VAAPARSSLV 186 G P SGPGA + + PA Q T GPP+S A V+K APA L Sbjct: 896 GQPGPHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEKLE 955 Query: 185 KELLRASSLKYXPT 144 + +A ++K T Sbjct: 956 PKAEQAPTVKRTET 969
>YJCD_ECOLI (P0AF52) Inner membrane protein yjcD| Length = 449 Score = 33.1 bits (74), Expect = 0.46 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +1 Query: 154 YFKLEARKSSFTKELRAGAATFLTMAYIISVNAAILTDSGGP---CTVLDCTPAGNSTAA 324 +FK+ R S+ +E+ AG TFL M Y + V +L +G P V C AG + Sbjct: 15 WFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIV 74 Query: 325 PG 330 G Sbjct: 75 MG 76
>YJCD_ECO57 (P0AF53) Inner membrane protein yjcD| Length = 449 Score = 33.1 bits (74), Expect = 0.46 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +1 Query: 154 YFKLEARKSSFTKELRAGAATFLTMAYIISVNAAILTDSGGP---CTVLDCTPAGNSTAA 324 +FK+ R S+ +E+ AG TFL M Y + V +L +G P V C AG + Sbjct: 15 WFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIV 74 Query: 325 PG 330 G Sbjct: 75 MG 76
>Y125_HAEIN (P44530) Hypothetical protein HI0125| Length = 438 Score = 31.2 bits (69), Expect = 1.7 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +1 Query: 157 FKLEARKSSFTKELRAGAATFLTMAYIISVNAAILTDSGGPCT---VLDCTPAG 309 F+L+ R S+ +E+ AG TFL M Y + V +L +G P + C AG Sbjct: 8 FELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAAGFPAESVFIATCLVAG 61
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 31.2 bits (69), Expect = 1.7 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%) Frame = -1 Query: 498 GVGAHPGGQRQREVGESAHGEGADHSS----HSRRNNQVALGAR---QALLVPRVGRAEH 340 G G H G Q G S HG G+ HSS H + Q + + + G+ E Sbjct: 347 GFGQHESGSGQSS-GYSKHGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHES 405 Query: 339 ALRPRSGRGVTRRGAVE---HGAR 277 A R SGRG G+ + HG R Sbjct: 406 ASRHSSGRGQHSSGSGQSPGHGQR 429
>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2377 Score = 30.0 bits (66), Expect = 3.9 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = -2 Query: 488 PIPGASASGRLARAPMAKEPTIAATAVATIRSLLVRARHCWYPGLD----APSMHSGPGA 321 P PG ++ L + PT+A T V + S L +A H GL APS S G Sbjct: 1491 PFPGMASQPSLPLSSSTSAPTLAETMVVSAHS-LDKASHSSTAGLGLSFCAPSSSSSSGT 1549 Query: 320 AVELPAGVQSSTVH 279 AV Q VH Sbjct: 1550 AVSTSVS-QPGMVH 1562
>REGQ_BPVT2 (P68923) Antitermination protein Q| Length = 144 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Frame = +3 Query: 372 VPGAHQERPDCCDG-----CGCYGRLLRHGR 449 +P + RP CCD CGC RL R+ R Sbjct: 35 IPEKVKSRPQCCDDDAMVICGCIARLYRNNR 65
>REGQ_BP933 (P68922) Antitermination protein Q| Length = 144 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Frame = +3 Query: 372 VPGAHQERPDCCDG-----CGCYGRLLRHGR 449 +P + RP CCD CGC RL R+ R Sbjct: 35 IPEKVKSRPQCCDDDAMVICGCIARLYRNNR 65
>COCA1_NOTVI (Q91145) Collagen alpha-1(XII) chain (Fragment)| Length = 929 Score = 30.0 bits (66), Expect = 3.9 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Frame = -2 Query: 503 K*AWAPIPGASASGRLARAPMA----KEPTIAATAVATIRSLLVRARHCWYPGLDAPSMH 336 K W P PG R+A P+A KE T+ AT L G+ P Sbjct: 173 KVGWTPAPGNVLRYRIAYRPVAGGERKEVTVQGNERATTLYNLFPDTKYHVSGV--PEYQ 230 Query: 335 SGPGAAVELPAGVQSSTVHGPPESVRMAALT 243 SGPG A L + V G P+++R++ T Sbjct: 231 SGPGTA--LNGNGATEEVVGEPKNLRVSEPT 259
>SYGB_STRP1 (Q99YI4) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 679 Score = 30.0 bits (66), Expect = 3.9 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -2 Query: 254 AALTEMMYAMVRKVAAPARSSLVKELLRASSLKYXPTLLAATERFTAASASENLRHGAVA 75 A + + A V K+ A ++E + ASS P +LAA E AS +EN + + Sbjct: 520 ADVMNFIRARVDKMMGKAAPKDIREAILASSTFVVPEMLAAAEALVKASHTENYKPAVES 579 Query: 74 FTVGF 60 + F Sbjct: 580 LSRAF 584
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 30.0 bits (66), Expect = 3.9 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 3/89 (3%) Frame = -2 Query: 359 GLDAPSMHSGPGAAVELPAGVQSSTVHGPPESVRMAALTEMMYAMVRKVAAPARSSLVKE 180 G+DA S H+GP + PAG PP A ++ VR A A VKE Sbjct: 766 GVDAVSQHAGPLGVMPAPAGAAPQGAPRPPPLGPEA--VQVRLEEVRTQARRAIEGAVKE 823 Query: 179 LLRASSLKYXPTLLAA---TERFTAASAS 102 ++ L A+ RF ASA+ Sbjct: 824 YFYRGAVYSAKALQASDNNDRRFHVASAA 852
>CEBPA_HUMAN (P49715) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 358 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = -2 Query: 353 DAPSMHSGPGAAVELPAGVQSSTVHGPPESVRMAA---LTEMMYAMVRKVAAPARSSLV 186 D P +GPG AV +P G HGPP AA L + + +V APA LV Sbjct: 107 DYPGAPAGPGGAV-MPGGA-----HGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLV 159
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 29.6 bits (65), Expect = 5.0 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Frame = -2 Query: 494 WAPIPGASASGRLARAPMA----KEPTIAAT-AVATIRSLLVRARHCWYPGLDAPSMHSG 330 W P PG RL P+ ++ T++A T+R+L+ R Y SG Sbjct: 742 WTPAPGNVLRYRLVYRPLTGGERRQVTVSANERSTTLRNLIPDTR---YEVSVIAEYQSG 798 Query: 329 PGAAVELPAGVQSSTVHGPPESVRMAALTEMMYAMVRKVAAPAR 198 PG A L ++ V G P ++R++ T + AAP + Sbjct: 799 PGNA--LNGYAKTDEVRGNPRNLRVSDATTSTTMKLSWSAAPGK 840
>SO3A1_HUMAN (Q9UIG8) Solute carrier organic anion transporter family member 3A1| (Solute carrier family 21 member 11) (Sodium-independent organic anion transporter D) (Organic anion-transporting polypeptide D) (OATP-D) (Organic anion transporter polypepti Length = 710 Score = 29.6 bits (65), Expect = 5.0 Identities = 23/87 (26%), Positives = 35/87 (40%) Frame = +1 Query: 166 EARKSSFTKELRAGAATFLTMAYIISVNAAILTDSGGPCTVLDCTPAGNSTAAPGPECML 345 E + SFT A T+L+ + N+ LT C L PA N+T PG Sbjct: 476 ECQTDSFTPVCGADGITYLSACFA-GCNSTNLTG----CACLTTVPAENATVVPGK---- 526 Query: 346 GASNPGYQQCLARTKSDLIVATAVAAM 426 +PG Q+ + + + + AM Sbjct: 527 -CPSPGCQEAFLTFLCVMCICSLIGAM 552
>CEBPA_MOUSE (P53566) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 359 Score = 29.3 bits (64), Expect = 6.6 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = -2 Query: 353 DAPSMHSGPGAAVELPAGVQSSTVHGPPESVRMAA---LTEMMYAMVRKVAAPARSSLV 186 D P +GPG AV S+ HGPP AA L + + +V APA LV Sbjct: 105 DYPGAPAGPGGAV------MSAGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLV 157
>CEBPA_BOVIN (O02754) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 353 Score = 29.3 bits (64), Expect = 6.6 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = -2 Query: 353 DAPSMHSGPGAAVELPAGVQSSTVHGPPESVRMAA---LTEMMYAMVRKVAAPARSSLV 186 D P GPG AV +P G HGPP AA L + + +V APA LV Sbjct: 105 DYPGAPVGPGGAV-MPGGT-----HGPPPGYGCAAAGYLDSRLEPLYERVGAPALRPLV 157
>CEBPA_RAT (P05554) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 358 Score = 29.3 bits (64), Expect = 6.6 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = -2 Query: 353 DAPSMHSGPGAAVELPAGVQSSTVHGPPESVRMAA---LTEMMYAMVRKVAAPARSSLV 186 D P +GPG AV S+ HGPP AA L + + +V APA LV Sbjct: 105 DYPGAPAGPGGAV------MSAGAHGPPPGYGCAAAGYLDGRLEPLYERVGAPALRPLV 157
>Y2392_ARCFU (O30279) Hypothetical protein AF2392| Length = 86 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 367 GTPGWTRRACTPAQERPWSYPP 302 G PGW R ++ PW YPP Sbjct: 21 GLPGWMRCRWWGYRDHPWDYPP 42
>B1_FHV (P68829) Protein B1| Length = 102 Score = 28.9 bits (63), Expect = 8.6 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 19/91 (20%) Frame = -1 Query: 489 AHPGGQRQREVGESAHGEGADHSSH-SRRNNQVALGARQALLVPRVGRAE---------- 343 A+PG R ++G G+ H + RR Q A G RQ +P+ G+ Sbjct: 10 ANPGTSRPH-----SNGGGSSHGNELPRRTEQRAQGPRQPARLPKQGKTNGKSDGNITAG 64 Query: 342 --------HALRPRSGRGVTRRGAVEHGARP 274 PR G+ TRR + GA+P Sbjct: 65 ETQRGGIPRGKGPRGGKTNTRRTPPKAGAQP 95
>B1_BBV (P68828) Protein B1| Length = 102 Score = 28.9 bits (63), Expect = 8.6 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 19/91 (20%) Frame = -1 Query: 489 AHPGGQRQREVGESAHGEGADHSSH-SRRNNQVALGARQALLVPRVGRAE---------- 343 A+PG R ++G G+ H + RR Q A G RQ +P+ G+ Sbjct: 10 ANPGTSRPH-----SNGGGSSHGNELPRRTEQRAQGPRQPARLPKQGKTNGKSDGNITAG 64 Query: 342 --------HALRPRSGRGVTRRGAVEHGARP 274 PR G+ TRR + GA+P Sbjct: 65 ETQRGGIPRGKGPRGGKTNTRRTPPKAGAQP 95
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/19 (73%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 135 RDGAVHGGLGLGEPAP-WR 82 RDG HG L LGEPAP WR Sbjct: 33 RDGLHHGPLCLGEPAPFWR 51
>RDRP_FHV (Q66929) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 998 Score = 28.9 bits (63), Expect = 8.6 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 19/91 (20%) Frame = -1 Query: 489 AHPGGQRQREVGESAHGEGADHSSH-SRRNNQVALGARQALLVPRVGRAE---------- 343 A+PG R ++G G+ H + RR Q A G RQ +P+ G+ Sbjct: 906 ANPGTSRPH-----SNGGGSSHGNELPRRTEQRAQGPRQPARLPKQGKTNGKSDGNITAG 960 Query: 342 --------HALRPRSGRGVTRRGAVEHGARP 274 PR G+ TRR + GA+P Sbjct: 961 ETQRGGIPRGKGPRGGKTNTRRTPPKAGAQP 991
>RDRP_BBV (Q96631) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 998 Score = 28.9 bits (63), Expect = 8.6 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 19/91 (20%) Frame = -1 Query: 489 AHPGGQRQREVGESAHGEGADHSSH-SRRNNQVALGARQALLVPRVGRAE---------- 343 A+PG R ++G G+ H + RR Q A G RQ +P+ G+ Sbjct: 906 ANPGTSRPH-----SNGGGSSHGNELPRRTEQRAQGPRQPARLPKQGKTNGKSDGNITAG 960 Query: 342 --------HALRPRSGRGVTRRGAVEHGARP 274 PR G+ TRR + GA+P Sbjct: 961 ETQRGGIPRGKGPRGGKTNTRRTPPKAGAQP 991
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 28.9 bits (63), Expect = 8.6 Identities = 22/79 (27%), Positives = 29/79 (36%) Frame = -2 Query: 494 WAPIPGASASGRLARAPMAKEPTIAATAVATIRSLLVRARHCWYPGLDAPSMHSGPGAAV 315 WAP+P + + A APM EP AP + PG A Sbjct: 726 WAPVPSPTHDPKPAEAPMPAEP--------------------------APPGPASPGGAP 759 Query: 314 ELPAGVQSSTVHGPPESVR 258 E PA ++ G P +VR Sbjct: 760 EPPAAARAG---GSPTAVR 775
>PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)| Length = 388 Score = 28.9 bits (63), Expect = 8.6 Identities = 24/76 (31%), Positives = 32/76 (42%) Frame = -1 Query: 498 GVGAHPGGQRQREVGESAHGEGADHSSHSRRNNQVALGARQALLVPRVGRAEHALRPRSG 319 GV A PGG+R R A G H R + + R+ P G+ RPR+ Sbjct: 77 GVVAGPGGRRARRAAGPARAAGLGRGGHRRPGPRRGVDRRRR---PAAGK-HPVRRPRNV 132 Query: 318 RGVTRRGAVEHGARPA 271 +G RR A G + A Sbjct: 133 QG--RRRAARAGRQMA 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,827,230 Number of Sequences: 219361 Number of extensions: 1020125 Number of successful extensions: 4969 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4960 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
