ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105627.1| Zea mays PCO089890 mRNA sequence 103 3e-19
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
3dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AK069288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
5emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 46 0.056
6emb|AL121891.22|HS1187M17 Human DNA sequence from clone RP5-1187... 44 0.22
7emb|AJ005286.1|HVH005286 Hordeum vulgare cv. Haisa mRNA for cp31... 44 0.22
8gb|AC104548.6| Mus musculus chromosome 5, clone RP24-83N12, comp... 44 0.22
9ref|XM_473842.1| Oryza sativa (japonica cultivar-group), predic... 42 0.87
10gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.87
11gb|AC122775.15| Mus musculus chromosome 5, clone RP24-191K3, com... 42 0.87
12gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.87
13emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 42 0.87
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
16gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complet... 42 0.87
17emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.87
18gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome... 40 3.4
19ref|XM_507177.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 3.4
20ref|XM_480935.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
21gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, co... 40 3.4
22gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.4
23gb|AC091263.15| Mus musculus chromosome 9, clone RP23-134F1, com... 40 3.4
24ref|XM_570087.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 3.4
25gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome... 40 3.4
26gb|AC131752.3| Mus musculus BAC clone RP23-21D6 from chromosome ... 40 3.4
27gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 3.4
28emb|AL353576.18| Human DNA sequence from clone RP11-335J9 on chr... 40 3.4
29emb|BX069811.1|CNS09Q13 Single read from an extremity of a full-... 40 3.4
30emb|BX056391.1|CNS09FOB Single read from an extremity of a full-... 40 3.4
31emb|BX040472.1|CNS093E4 Single read from an extremity of a full-... 40 3.4
32emb|BX029093.1|CNS08UM1 Single read from an extremity of a full-... 40 3.4
33emb|BX025796.1|CNS08S2G Single read from an extremity of a full-... 40 3.4
34emb|BX023484.1|CNS08QA8 Single read from an extremity of a full-... 40 3.4
35emb|BX018177.1|CNS08M6T Single read from an extremity of a full-... 40 3.4
36emb|BX011925.1|CNS08HD5 Single read from an extremity of a full-... 40 3.4
37gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, c... 40 3.4
38gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 3.4
39gb|CP000249.1| Frankia sp. CcI3, complete genome 40 3.4
40gb|AC160636.2| Mus musculus BAC clone RP23-364M15 from chromosom... 40 3.4
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
42dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 3.4
43dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
44dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
45dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
46dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
47emb|X82830.1|HVCIIIO H.vulgare mRNA for coproporphyrinogen oxidase 40 3.4
48ref|XM_316859.2| Anopheles gambiae str. PEST ENSANGP00000013107 ... 40 3.4
49dbj|AK099083.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
50dbj|AK068915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
51gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 3.4
52gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, co... 40 3.4 
>gb|AY105627.1| Zea mays PCO089890 mRNA sequence
          Length = 1249

 Score =  103 bits (52), Expect = 3e-19
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                       
Query: 54  ccatggcgaccgccttcgactccccgacctcctccccggccgccgcgcccttccacgacg 113
           ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 78  ccatggccaccgcctttgactccccgacctcctcccccgccgccgcgcccttccacgacg 137

                      
Query: 114 acnccttcctc 124
           || | ||||||
Sbjct: 138 accctttcctc 148



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 176 gccggcgacgacttcccggcctcccccgacccctacgc 213
           |||| ||||| ||||||||||||||| ||| |||||||
Sbjct: 173 gccgccgacggcttcccggcctccccggacgcctacgc 210
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                            
Query: 54       ccatggcgaccgccttcgactccccgacctcctccccggccgccgcgcccttccacgacg 113
                ||||||| |||||||| |||||||||||| |||| || |||||| | |||||| ||||||
Sbjct: 30695367 ccatggccaccgcctttgactccccgaccgcctcgcccgccgcctctcccttcgacgacg 30695308

                                  
Query: 114      acnccttcctcagcttcg 131
                || |||||||| ||||||
Sbjct: 30695307 actccttcctccgcttcg 30695290



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 84       cctccccggccgccgcgcccttcc 107
                |||| |||||||||||||||||||
Sbjct: 22261356 cctcgccggccgccgcgcccttcc 22261333



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      cctcctccccggccgccgcg 100
               ||||||||||||||||||||
Sbjct: 7275338 cctcctccccggccgccgcg 7275319
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>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1206D04
          Length = 130176

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                         
Query: 54    ccatggcgaccgccttcgactccccgacctcctccccggccgccgcgcccttccacgacg 113
             ||||||| |||||||| |||||||||||| |||| || |||||| | |||||| ||||||
Sbjct: 98023 ccatggccaccgcctttgactccccgaccgcctcgcccgccgcctctcccttcgacgacg 97964

                               
Query: 114   acnccttcctcagcttcg 131
             || |||||||| ||||||
Sbjct: 97963 actccttcctccgcttcg 97946
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>dbj|AK069288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014P04, full
           insert sequence
          Length = 1305

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                       
Query: 54  ccatggcgaccgccttcgactccccgacctcctccccggccgccgcgcccttccacgacg 113
           ||||||| |||||||| |||||||||||| |||| || |||||| | |||||| ||||||
Sbjct: 127 ccatggccaccgcctttgactccccgaccgcctcgcccgccgcctctcccttcgacgacg 186

                             
Query: 114 acnccttcctcagcttcg 131
           || |||||||| ||||||
Sbjct: 187 actccttcctccgcttcg 204
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 87     ccccggccgccgcgcccttccac 109
              |||||||||||||||||||||||
Sbjct: 187314 ccccggccgccgcgcccttccac 187292
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>emb|AL121891.22|HS1187M17 Human DNA sequence from clone RP5-1187M17 on chromosome 20 Contains the
             5' end of the AVP gene for arginine vasopressin
             (neurophysin II), the gene KIAA0860 for a likely ortholog
             of mouse ubiquitin conjugating enzyme a novel gene 7
             interacting protein 5, a novel gene (FLJ3149), a novel
             gene (KIAA0552), the C20orf116 gene, the 5' end of the
             ITPA gene for inosine triphosphatase (nucleoside
             triphosphate pyrophosphatase), a novel transcript and nine
             CpG islands, complete sequence
          Length = 125856

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 78    cgacctcctccccggccgccgc 99
             ||||||||||||||||||||||
Sbjct: 74843 cgacctcctccccggccgccgc 74864
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>emb|AJ005286.1|HVH005286 Hordeum vulgare cv. Haisa mRNA for cp31AHv protein
          Length = 1318

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 72  actccccgacctcctccccggccgcc 97
           ||||||||||||||||| ||||||||
Sbjct: 485 actccccgacctcctcctcggccgcc 460
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>gb|AC104548.6| Mus musculus chromosome 5, clone RP24-83N12, complete sequence
          Length = 214247

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 13     caccaccagcaccctccccagatcct 38
              ||||||||||||||||||| ||||||
Sbjct: 159547 caccaccagcaccctcccccgatcct 159572
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>ref|XM_473842.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1257

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 84  cctccccggccgccgcgcccttcca 108
           |||||||||||||||||||| ||||
Sbjct: 20  cctccccggccgccgcgcccatcca 44
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>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
              complete sequence
          Length = 131860

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     cctcctccccggccgccgcgc 101
              |||||||||||||||||||||
Sbjct: 119117 cctcctccccggccgccgcgc 119137
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>gb|AC122775.15| Mus musculus chromosome 5, clone RP24-191K3, complete sequence
          Length = 158766

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     agatcaccaccaccagcaccc 26
             |||||||||||||||||||||
Sbjct: 73792 agatcaccaccaccagcaccc 73772
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>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
            complete sequence
          Length = 163130

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 81   cctcctccccggccgccgcgc 101
            |||||||||||||||||||||
Sbjct: 6889 cctcctccccggccgccgcgc 6909
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 84    cctccccggccgccgcgcccttcca 108
             |||||||||||||||||||| ||||
Sbjct: 38925 cctccccggccgccgcgcccatcca 38901
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 84       cctccccggccgccgcgcccttcca 108
                |||||||||||||||||||| ||||
Sbjct: 30941553 cctccccggccgccgcgcccatcca 30941529
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 81       cctcctccccggccgccgcgc 101
                |||||||||||||||||||||
Sbjct: 22417482 cctcctccccggccgccgcgc 22417502
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>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence
          Length = 169697

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   ttcccggcctcccccgacccc 208
             |||||||||||||||||||||
Sbjct: 41735 ttcccggcctcccccgacccc 41715
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
              sequence
          Length = 134586

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 84     cctccccggccgccgcgcccttcca 108
              |||||||||||||||||||| ||||
Sbjct: 118563 cctccccggccgccgcgcccatcca 118539
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>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence
          Length = 245594

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      atcaccaccaccagcaccct 27
              ||||||||||||||||||||
Sbjct: 226942 atcaccaccaccagcaccct 226961
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>ref|XM_507177.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0070J06.25
           mRNA
          Length = 2298

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  cctcctccccggccgccgcg 100
           ||||||||||||||||||||
Sbjct: 101 cctcctccccggccgccgcg 82
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>ref|XM_480935.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2298

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  cctcctccccggccgccgcg 100
           ||||||||||||||||||||
Sbjct: 101 cctcctccccggccgccgcg 82
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>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence
          Length = 219244

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      tcaccaccaccagcaccctcccca 32
              |||||||||||||| |||||||||
Sbjct: 163436 tcaccaccaccagccccctcccca 163459
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      ctccccggccgccgcgccct 104
               ||||||||||||||||||||
Sbjct: 1301866 ctccccggccgccgcgccct 1301847
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>gb|AC091263.15| Mus musculus chromosome 9, clone RP23-134F1, complete sequence
          Length = 204289

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     gatcaccaccaccagcaccc 26
             ||||||||||||||||||||
Sbjct: 92461 gatcaccaccaccagcaccc 92480
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>ref|XM_570087.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND04730) partial mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  ctccccggccgccgcgccct 104
           ||||||||||||||||||||
Sbjct: 69  ctccccggccgccgcgccct 88
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>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence
          Length = 144545

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     tcaccaccaccagcaccctcccca 32
             |||||||||||||| |||||||||
Sbjct: 13521 tcaccaccaccagccccctcccca 13544
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>gb|AC131752.3| Mus musculus BAC clone RP23-21D6 from chromosome 5, complete sequence
          Length = 203321

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      atcaccaccaccagcaccct 27
              ||||||||||||||||||||
Sbjct: 161698 atcaccaccaccagcaccct 161717
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 6       agatcaccaccaccagcacc 25
               ||||||||||||||||||||
Sbjct: 4032510 agatcaccaccaccagcacc 4032529
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>emb|AL353576.18| Human DNA sequence from clone RP11-335J9 on chromosome 10 Contains
            the 5' end of the gene for a novel protein possible
            ortholog of mouse C1q-like protein (gliacolin) and a CpG
            island, complete sequence
          Length = 52065

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   cccggccgccgcgcccttcc 107
            ||||||||||||||||||||
Sbjct: 3179 cccggccgccgcgcccttcc 3198
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>emb|BX069811.1|CNS09Q13 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC6CE05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 965

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 338 ccttcctcagcttcgccgac 357
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>emb|BX056391.1|CNS09FOB Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC35CF06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 614

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 246 ccttcctcagcttcgccgac 265
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>emb|BX040472.1|CNS093E4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC11BD02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 536

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 126 ccttcctcagcttcgccgac 145
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>emb|BX029093.1|CNS08UM1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA43CA08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1007

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 381 ccttcctcagcttcgccgac 400
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>emb|BX025796.1|CNS08S2G Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA39CE11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 931

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 385 ccttcctcagcttcgccgac 404
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>emb|BX023484.1|CNS08QA8 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA35DF03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 615

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 162 ccttcctcagcttcgccgac 181
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>emb|BX018177.1|CNS08M6T Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA27CA08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 715

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 370 ccttcctcagcttcgccgac 389
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>emb|BX011925.1|CNS08HD5 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA19AA11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 698

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 355 ccttcctcagcttcgccgac 374
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>gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, complete sequence
          Length = 195191

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   cccggccgccgcgcccttcc 107
            ||||||||||||||||||||
Sbjct: 6440 cccggccgccgcgcccttcc 6421
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     gccgcgcaccccttcggcat 252
               ||||||||||||||||||||
Sbjct: 2920998 gccgcgcaccccttcggcat 2920979
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     ccccggccgccgcgcccttc 106
              ||||||||||||||||||||
Sbjct: 776620 ccccggccgccgcgcccttc 776639
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>gb|AC160636.2| Mus musculus BAC clone RP23-364M15 from chromosome 9, complete
           sequence
          Length = 139726

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   gatcaccaccaccagcaccc 26
           ||||||||||||||||||||
Sbjct: 469 gatcaccaccaccagcaccc 450
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      cctcctccccggccgccgcg 100
               ||||||||||||||||||||
Sbjct: 8754159 cctcctccccggccgccgcg 8754140
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tcccggcctcccccgacccc 208
              ||||||||||||||||||||
Sbjct: 650953 tcccggcctcccccgacccc 650972
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>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0437G01
          Length = 147101

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    cctcctccccggccgccgcg 100
             ||||||||||||||||||||
Sbjct: 31908 cctcctccccggccgccgcg 31889
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    cctccccggccgccgcgcccttcc 107
             |||| |||||||||||||||||||
Sbjct: 39779 cctcgccggccgccgcgcccttcc 39756
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>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0052G07
          Length = 156207

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     cctcctccccggccgccgcg 100
              ||||||||||||||||||||
Sbjct: 110342 cctcctccccggccgccgcg 110323
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0070J06
          Length = 142303

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    cctcctccccggccgccgcg 100
             ||||||||||||||||||||
Sbjct: 97138 cctcctccccggccgccgcg 97119
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>emb|X82830.1|HVCIIIO H.vulgare mRNA for coproporphyrinogen oxidase
          Length = 1456

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  ctcctccccggccgccgcgc 101
           ||||||||||||||||||||
Sbjct: 170 ctcctccccggccgccgcgc 189
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>ref|XM_316859.2| Anopheles gambiae str. PEST ENSANGP00000013107
           (ENSANGG00000010618), partial mRNA
          Length = 1194

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 ccttcctcagcttcgccgac 136
           ||||||||||||||||||||
Sbjct: 278 ccttcctcagcttcgccgac 297
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>dbj|AK099083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A08, full
           insert sequence
          Length = 2298

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  cctcctccccggccgccgcg 100
           ||||||||||||||||||||
Sbjct: 101 cctcctccccggccgccgcg 82
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>dbj|AK068915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001C12, full
           insert sequence
          Length = 2298

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  cctcctccccggccgccgcg 100
           ||||||||||||||||||||
Sbjct: 101 cctcctccccggccgccgcg 82
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     ccgacccctacgccttccgc 220
               ||||||||||||||||||||
Sbjct: 1081548 ccgacccctacgccttccgc 1081529
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>gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, complete sequence
          Length = 216506

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    caccctccccagatcctcacccca 45
             ||||||||||| ||||||||||||
Sbjct: 96986 caccctccccacatcctcacccca 97009


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,726,322
Number of Sequences: 3902068
Number of extensions: 1726322
Number of successful extensions: 56796
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56317
Number of HSP's gapped (non-prelim): 479
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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