ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08c01 |
|---|---|
| Clone Library Name | barley_pub |
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 79.3 bits (194), Expect = 6e-15 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Frame = +2 Query: 212 VPAVYVFGDSTVDVGNNQYLPGKSALQL-PYGIDFPQSRPTGRFSNGFNVADSISRLLGF 388 +PAV+ FGDS D GNN L K PYG+DFP TGRFSNG +D IS+ LG Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182 Query: 389 KRSPPAYLSLTPETSRQIVRG--YRGVNYASGGSGILDTTGNA 511 K PAY+ + + ++ + GV++ASGG+G L T + Sbjct: 183 KEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSES 225
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 75.5 bits (184), Expect = 8e-14 Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Frame = +2 Query: 167 SPAAASGRAAGEVHLVPAVYVFGDSTVDVGNNQYLPGK-SALQLPYGIDFPQSRPTGRFS 343 SP A E +PAV+ FGDS D GNN L K + PYG+DF TGRFS Sbjct: 187 SPKPAPSPPKPENKTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFS 246 Query: 344 NGFNVADSISRLLGFKRSPPAYLSLTPETSRQIVRGYRGVNYASGGSGILDTTGNA 511 NG +D +++ +G K PAYL + + + GV++ASGG+G TT A Sbjct: 247 NGMVASDYLAKYMGVKEIVPAYLDPKIQPNDLLT----GVSFASGGAGYNPTTSEA 298
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 37.4 bits (85), Expect = 0.025 Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Frame = +2 Query: 194 AGEVHLVPAVYVFGDSTVDVGNNQYLPGKSA----LQLPYGIDFPQSRPTGRFSNGFNVA 361 A E PA++ FGDS D G GK+A L PYG F R TGR+S+G + Sbjct: 26 ASETCDFPAIFNFGDSNSDTG------GKAAAFYPLNPPYGETF-FHRSTGRYSDGRLII 78 Query: 362 DSISRLLGFKRSPPAYLSLTPETSRQIVRGYRGVNYASGGSGI-LDTT 502 D I+ P YLS + G ++A+ GS I L TT Sbjct: 79 DFIAESFNLPYLSP-YLSSLGSNFK------HGADFATAGSTIKLPTT 119
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 35.0 bits (79), Expect = 0.12 Identities = 31/92 (33%), Positives = 43/92 (46%) Frame = +2 Query: 215 PAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSRPTGRFSNGFNVADSISRLLGFKR 394 PA++ FGDS D G G++ P+G F S P GR+ +G V D I+ LG Sbjct: 29 PAIFNFGDSNSDTGGLSAAFGQAG--PPHGSSFFGS-PAGRYCDGRLVIDFIAESLGL-- 83 Query: 395 SPPAYLSLTPETSRQIVRGYRGVNYASGGSGI 490 YLS ++ G N+A+ GS I Sbjct: 84 ---PYLSAFLDSVGS--NFSHGANFATAGSPI 110
>GIDB_FRATT (Q5NEF0) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 205 Score = 33.1 bits (74), Expect = 0.47 Identities = 24/70 (34%), Positives = 34/70 (48%) Frame = +2 Query: 209 LVPAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSRPTGRFSNGFNVADSISRLLGF 388 L A Y+ GDSTVDVG LPG + I +PQ + F + DS+ + + F Sbjct: 61 LAVAKYIKGDSTVDVGTGGGLPG-----VVLAILYPQHQ--------FTLVDSVGKKIMF 107 Query: 389 KRSPPAYLSL 418 ++ LSL Sbjct: 108 LKNVKKSLSL 117
>SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1208 Score = 29.6 bits (65), Expect = 5.2 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -2 Query: 109 PHHGAGS*LVHCFGFADGRRTAVQGRQVGGRMPA 8 P +G S +G ADG RT G GGR PA Sbjct: 868 PAYGNDSSRTPAYGSADGARTPAYGSTEGGRTPA 901
>GIDB_HAEIN (P44728) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 203 Score = 29.6 bits (65), Expect = 5.2 Identities = 25/74 (33%), Positives = 33/74 (44%) Frame = +2 Query: 209 LVPAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSRPTGRFSNGFNVADSISRLLGF 388 LV + Y+ GD +DVG LPG LP I P S F + DS+ + + F Sbjct: 58 LVVSPYLQGDRFIDVGTGPGLPG-----LPLAIINP--------SKQFVLLDSLGKRISF 104 Query: 389 KRSPPAYLSLTPET 430 R+ L LT T Sbjct: 105 IRNAIRELRLTNVT 118
>GIDB_HAEI8 (Q4QN56) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 203 Score = 29.6 bits (65), Expect = 5.2 Identities = 25/74 (33%), Positives = 33/74 (44%) Frame = +2 Query: 209 LVPAVYVFGDSTVDVGNNQYLPGKSALQLPYGIDFPQSRPTGRFSNGFNVADSISRLLGF 388 LV + Y+ GD +DVG LPG LP I P S F + DS+ + + F Sbjct: 58 LVVSPYLQGDRFIDVGTGPGLPG-----LPLAIINP--------SKQFVLLDSLGKRISF 104 Query: 389 KRSPPAYLSLTPET 430 R+ L LT T Sbjct: 105 IRNAIRELRLTNVT 118
>DUT_RHOPA (P61911) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 152 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -3 Query: 327 GLDCGKSMP*GSCSALFPGRYWLLPTS-TVESPNTYTAGTR 208 GLD ++P + L PGRY L+PT T+ P Y A R Sbjct: 30 GLDLIAAVPQDAPLTLQPGRYVLVPTGLTIALPENYEAQVR 70
>TSP3_MOUSE (Q05895) Thrombospondin-3 precursor| Length = 956 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = +1 Query: 7 PRASCHLPAYLAPQFFSHQQTQNSGPASCRRHDGGEGGAGCC 132 P +CH PA+ +H + +G SC+ + G G C Sbjct: 414 PARTCHSPAHSPCHIHAHCLFERNGAVSCQCNVGWAGNGNVC 455
>TSP3_HUMAN (P49746) Thrombospondin-3 precursor| Length = 956 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = +1 Query: 7 PRASCHLPAYLAPQFFSHQQTQNSGPASCRRHDGGEGGAGCC 132 P +CH PA+ +H + +G SC+ + G G C Sbjct: 414 PARTCHSPAHSPCHIHAHCLFERNGAVSCQCNVGWAGNGNVC 455 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.135 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,681,076 Number of Sequences: 219361 Number of extensions: 971042 Number of successful extensions: 3522 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3392 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3518 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
