ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 62 5e-10
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 57 1e-08
3APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 35 0.055
4APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 35 0.094
5HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 35 0.094
6GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase p... 30 1.8
7MMP9_CANFA (O18733) Matrix metalloproteinase-9 precursor (EC 3.4... 29 5.2
8ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11 28 6.7
9RR4B_CYACA (O22029) Chloroplast 30S ribosomal protein S4 28 8.8

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
 Frame = +3

Query: 192 YYNAIFSFGDSFSDTGNFVII--NSGKLPNMPKFPPPYARCSNGRLVIDFLAEALGVPLL 365
           ++ AIF+FGDS SDTG        +G       F  P  R  +GRLVIDF+AE+LG+P L
Sbjct: 27  HFPAIFNFGDSNSDTGGLSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLGLPYL 86

Query: 366 PPSANK-GTNFSQGANFA 416
               +  G+NFS GANFA
Sbjct: 87  SAFLDSVGSNFSHGANFA 104



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
 Frame = +3

Query: 195 YNAIFSFGDSFSDTGNFVIINSGKLPNMPKFPPPYA---------RCSNGRLVIDFLAEA 347
           + AIF+FGDS SDTG       GK        PPY          R S+GRL+IDF+AE+
Sbjct: 32  FPAIFNFGDSNSDTG-------GKAAAFYPLNPPYGETFFHRSTGRYSDGRLIIDFIAES 84

Query: 348 LGVPLLPP-SANKGTNFSQGANFA 416
             +P L P  ++ G+NF  GA+FA
Sbjct: 85  FNLPYLSPYLSSLGSNFKHGADFA 108



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +3

Query: 201 AIFSFGDSFSDTGN----FVIINSGKLPNMPKFPPPYA--RCSNGRLVIDFLAEALGVPL 362
           A+F FGDS  DTGN       +     P    FP   A  R SNGR+  D++++ LGV  
Sbjct: 125 AVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKE 184

Query: 363 LPPS 374
           + P+
Sbjct: 185 IVPA 188



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +3

Query: 201 AIFSFGDSFSDTGNFVIINSGKLPNMP------KFPPPYARCSNGRLVIDFLAEALGVPL 362
           A+F FGDS  DTGN   + +    N        KF     R SNG +  D+LA+ +GV  
Sbjct: 204 AVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVKE 263

Query: 363 LPPS 374
           + P+
Sbjct: 264 IVPA 267



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 186 PQYYNAIFSFGDSFSDTGNFVIINSGKLPNMPKFPPPYARCSNGRLVIDFLAEALGVPL 362
           P   N + + GDS SDTGN    +  + PN   +       SNG +  +++A+A  +PL
Sbjct: 141 PDQINKVVALGDSLSDTGNIFNASQWRFPNPNSW--FLGHFSNGFVWTEYIAKAKNLPL 197



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>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC|
           2.3.1.43) (Glycerophospholipid-cholesterol
           acyltransferase) (GCAT)
          Length = 335

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 195 YNAIFSFGDSFSDTGNFVIINSGKLPNMPKFPPPYARCSNGRLVIDFL 338
           ++ I  FGDS SDTG       G LP+ P  P    R SNG + ++ L
Sbjct: 25  FSRIVMFGDSLSDTGKMYSKMRGYLPSSP--PYYEGRFSNGPVWLEQL 70



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>MMP9_CANFA (O18733) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 704

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 186 AAVPPTPWPKRRPDTGGCTTTASSPWSPPKLAPHQ 82
           A  PPT  P  RP  G     A+ P  PP   P +
Sbjct: 466 ATGPPTTRPSERPTAGPTGPPAAGPTGPPTAGPSE 500



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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 174  PTPWPKRRPDTGGCTTTASSPWSPPKLAPHQ 82
            P P+P+    +   T  +S P S PKL P Q
Sbjct: 1430 PQPFPQNSSQSAAITQPSSQPGSQPKLGPPQ 1460



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>RR4B_CYACA (O22029) Chloroplast 30S ribosomal protein S4|
          Length = 192

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 231 DTGNFVIINSGKLPNMPKFPPPYARCSNGRLVI 329
           +  + + + S   P  P++ PPY + SNG L +
Sbjct: 133 EVNHVIEVKSSSPPKPPEYLPPYLQLSNGTLTV 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,650,734
Number of Sequences: 219361
Number of extensions: 690082
Number of successful extensions: 2657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2646
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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