ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08b03 |
|---|---|
| Clone Library Name | barley_pub |
>CG146_ARATH (Q93VG8) UPF0326 protein At4g17486| Length = 224 Score = 186 bits (472), Expect = 3e-47 Identities = 78/126 (61%), Positives = 104/126 (82%) Frame = +1 Query: 130 EEMDAGNDGTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVF 309 E ++ + TPV LNVYDLTPVN+YLYW G G+FHSGIE H +EY +GAH++ +SGV+ Sbjct: 15 ERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVY 74 Query: 310 EVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCK 489 EV+ + CPGF++R++V LGTT MSR DFRS++E+L+ KYHG+TY+LI+KNCNHFT++VC Sbjct: 75 EVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCL 134 Query: 490 NLTGKP 507 LTGKP Sbjct: 135 QLTGKP 140
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 107 bits (267), Expect = 2e-23 Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 4/121 (3%) Frame = +1 Query: 154 GTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVFEVQ----S 321 G V+LNVYD+ +N+Y +G GVFHSGIEV+G E+ +G H + SG+FE+ S Sbjct: 2 GANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAS 61 Query: 322 KCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTG 501 + F +++ V LG+TD +D +E L +Y GN Y+L+ KNCNHF+ + + L G Sbjct: 62 ELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG 121 Query: 502 K 504 K Sbjct: 122 K 122
>CG146_MOUSE (Q9D291) UPF0326 protein CGI-146 homolog| Length = 194 Score = 107 bits (267), Expect = 2e-23 Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 4/121 (3%) Frame = +1 Query: 154 GTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVFEVQ----S 321 G V+LNVYD+ +N+Y +G GVFHSGIEV+G E+ +G H + SG+FE+ S Sbjct: 2 GANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAS 61 Query: 322 KCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTG 501 + F +++ V LG+TD +D +E L +Y GN Y+L+ KNCNHF+ + + L G Sbjct: 62 ELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG 121 Query: 502 K 504 K Sbjct: 122 K 122
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 107 bits (267), Expect = 2e-23 Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 4/121 (3%) Frame = +1 Query: 154 GTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDFSSSGVFEVQ----S 321 G V+LNVYD+ +N+Y +G GVFHSGIEV+G E+ +G H + SG+FE+ S Sbjct: 2 GANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAS 61 Query: 322 KCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTG 501 + F +++ V LG+TD +D +E L +Y GN Y+L+ KNCNHF+ + + L G Sbjct: 62 ELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCG 121 Query: 502 K 504 K Sbjct: 122 K 122
>HAG1_SCHPO (Q8X1T0) UPF0326 protein hag1| Length = 201 Score = 82.8 bits (203), Expect = 5e-16 Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Frame = +1 Query: 169 VLLNVYDL---TPVNDYLYWLGFGVFHSGIEVHGMEYGFGAHDF-SSSGVFEVQSK-CCP 333 V +NVYDL +PVN + LG G++H+G+ + G EY FGAH+ S+GVF + Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62 Query: 334 GFVYRKTVWLGTTDMSREDFRSFIERLAGKYHGNTYNLISKNCNHFTDDVCKNLTGKP 507 G +R ++ L + + D + RL+ ++ G +Y+L+ +NCNHFT+ LTG P Sbjct: 63 GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSP 120
>AACA_STAWA (Q7ATH7) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STASC (Q7ATH9) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAHJ (Q4L605) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAEQ (Q5HMP3) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAAU (P0A0C1) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_STAAM (P0A0C0) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_ENTFC (Q52S23) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>AACA_ENTFA (P0A0C2) Bifunctional AAC/APH [Includes: 6'-aminoglycoside| N-acetyltransferase (EC 2.3.1.-) (AAC(6')); 2''-aminoglycoside phosphotransferase (EC 2.7.1.-) (APH(2''))] Length = 479 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = +1 Query: 250 EVHGMEYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSREDFRSFIERLAGKYH 429 ++HG++Y D S + Q+ + R+T++ TD+ ++ SF+ERL Sbjct: 308 QMHGLDYT----DISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTV 363 Query: 430 GNTYNLISKN---CNHFTDDVCKNLTG 501 + N CNH D LTG Sbjct: 364 FEGKKCLCHNDFSCNHLLLDGNNRLTG 390
>GON4L_MOUSE (Q9DB00) GON-4-like protein (GON-4 homolog)| Length = 2260 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = -3 Query: 323 FDCTSNTPLDEKSCAP-----NPYSMP*TSIPEWK 234 F C+ N PL S +P NP ++P TSIPE K Sbjct: 1200 FPCSLNQPLVASSISPLIVSSNPLTLPVTSIPEDK 1234
>HEM3_SYNEL (Q8DIE4) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 320 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -1 Query: 385 PETCQLCLATPSFYRQIQGNISIAPQIHRWMRNHVLQI 272 PET CLA +F RQ++G + +H + N L + Sbjct: 228 PETTARCLAERAFLRQLEGGCQVPIGVHTVIENGQLTL 265
>HEM3_RAT (P19356) Porphobilinogen deaminase (EC 2.5.1.61)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) (PBG-D) Length = 361 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -1 Query: 385 PETCQLCLATPSFYRQIQGNISIAPQIHRWMRNHVLQI 272 PET C+A +F R ++G S+ +H M++ L + Sbjct: 241 PETLLRCIAERAFLRHLEGGCSVPVAVHTVMKDGQLYL 278
>HEM3_HUMAN (P08397) Porphobilinogen deaminase (EC 2.5.1.61)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) (PBG-D) Length = 361 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -1 Query: 385 PETCQLCLATPSFYRQIQGNISIAPQIHRWMRNHVLQI 272 PET C+A +F R ++G S+ +H M++ L + Sbjct: 241 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYL 278
>GON4L_RAT (Q535K8) GON-4-like protein (Protein GON4) (GON-4 homolog)| Length = 2256 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = -3 Query: 323 FDCTSNTPLDEKSCAP-----NPYSMP*TSIPEWK 234 F C+ N PL S +P NP ++P TS+PE K Sbjct: 1199 FPCSLNQPLVASSISPLLVSSNPLALPVTSLPEEK 1233
>CWF19_SCHPO (Q09909) Cell cycle control protein cwf19| Length = 639 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Frame = +1 Query: 229 GVFHSGIEVHGM-------EYGFGAHDFSSSGVFEVQSKCCPGFVYRKTVWLGTTDMSRE 387 G FH + G E +G HD VF P + RK W G D + Sbjct: 563 GYFHVWFSIDGGYGHVVEDEKAWGRHDQVPRQVFASMLNLPPEVIRRKGSWTGKKDPRED 622 Query: 388 DFRSFIER 411 FRS E+ Sbjct: 623 MFRSRFEK 630
>YDFI_ECOLI (P77260) Hypothetical oxidoreductase ydfI (EC 1.-.-.-)| Length = 486 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Frame = +1 Query: 145 GNDGTTTPVLLNVYDLTPVNDYLYWLGFGVFHSGIEVHGMEYG--FGAHDFSSSGVFEV 315 GN+ + L VYDL + + LGFG FH H Y FS G +EV Sbjct: 2 GNNLLSAKATLPVYDLNNLAPRIVHLGFGAFH---RAHQGVYADILATEHFSDWGYYEV 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,788,125 Number of Sequences: 219361 Number of extensions: 1317818 Number of successful extensions: 3433 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3345 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3429 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
