ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08b02 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 105 bits (263), Expect = 7e-23 Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 7/152 (4%) Frame = +2 Query: 116 MASDG-DNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGD-----SVRRDEIV 277 MA D + RL+R+R+TVLQM+ DRGYLV DE L F +YGD R ++ Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60 Query: 278 IHCEKDGDPNDXVDVFFLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEV- 454 I + DP D + VFF +++ G+ +++ +M++QN++ I+++Q ++ A+ + Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 455 SQSKKYRLEVFQEGELLVNITEHHLVPXHELL 550 + KY LE F E EL+VNITEH LVP H ++ Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 105 bits (261), Expect = 1e-22 Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 6/151 (3%) Frame = +2 Query: 116 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDS-----VRRDEIVI 280 M + + RL+++R+T++Q+ DRGYLV DE +L EF ++GD RR ++ + Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60 Query: 281 HCEKDGDPNDXVDVFFLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTE-VS 457 + DP D + VFF +E G+ ++ +M+++N+T ++++Q+ ++ A+ V Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120 Query: 458 QSKKYRLEVFQEGELLVNITEHHLVPXHELL 550 + KY LE F + ELL+NITEH LVP H ++ Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVM 151
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 105 bits (261), Expect = 1e-22 Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 6/151 (3%) Frame = +2 Query: 116 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDS-----VRRDEIVI 280 M + + RL+++R+T++Q+ DRGYLV DE +L EF ++GD RR ++ + Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60 Query: 281 HCEKDGDPNDXVDVFFLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTE-VS 457 + DP D + VFF +E G+ ++ +M+++N+T ++++Q+ ++ A+ V Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120 Query: 458 QSKKYRLEVFQEGELLVNITEHHLVPXHELL 550 + KY LE F + ELL+NITEH LVP H ++ Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVM 151
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 104 bits (260), Expect = 1e-22 Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 6/151 (3%) Frame = +2 Query: 116 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDS-----VRRDEIVI 280 M + + RL+++R+T++Q+ DRGYLV DE +L EF ++GD RR ++ + Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTV 60 Query: 281 HCEKDGDPNDXVDVFFLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTE-VS 457 + DP D + VFF +E G+ ++ +M+++N+T ++++Q+ ++ A+ V Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120 Query: 458 QSKKYRLEVFQEGELLVNITEHHLVPXHELL 550 + KY LE F + ELL+NITEH LVP H ++ Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVM 151
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 83.6 bits (205), Expect = 4e-16 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 9/149 (6%) Frame = +2 Query: 122 SDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGD 301 +D RL+R +TV +M+RDRGY + +E +SL EF R DS+ + + C + Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63 Query: 302 PNDXVDVF---------FLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEV 454 + ++ F F DE+ G+ +R+ + ++N + GI I Q +++ A + Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123 Query: 455 SQSKKYRLEVFQEGELLVNITEHHLVPXH 541 +E FQEG+L+VNIT H LVP H Sbjct: 124 PTVSPASIETFQEGDLVVNITHHDLVPKH 152
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 9/143 (6%) Frame = +2 Query: 140 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDXVD 319 RL+R RTV +M+RDRGY + +E LSL +F +Y DS+ + + + + + ++ Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIE 70 Query: 320 VF---------FLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEVSQSKKY 472 F F DE+ G+ +++ + + ++N GI I Q ++ A + + Sbjct: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA 130 Query: 473 RLEVFQEGELLVNITEHHLVPXH 541 +E F E L+VNIT H LVP H Sbjct: 131 VIETFPEASLVVNITHHELVPKH 153
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 77.0 bits (188), Expect = 3e-14 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 9/143 (6%) Frame = +2 Query: 140 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDXVD 319 RL+R +TV +M+RDRGY + +E LSL +F +Y DS+ + + + + + ++ Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIE 70 Query: 320 VF---------FLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEVSQSKKY 472 F F DE+ G+ +++ + + ++N GI I Q ++ A + + Sbjct: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA 130 Query: 473 RLEVFQEGELLVNITEHHLVPXH 541 +E F E L+VNIT H LVP H Sbjct: 131 VIETFPEASLVVNITHHELVPKH 153
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 75.1 bits (183), Expect = 1e-13 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 9/143 (6%) Frame = +2 Query: 140 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDXVD 319 RL+R RTV +M++DRGY + +E +L L +F +Y DS+ R + + + + + Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESIS 70 Query: 320 VF---------FLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEVSQSKKY 472 F F DE G+ +++ + ++++N GI + Q ++ A V Sbjct: 71 KFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPA 130 Query: 473 RLEVFQEGELLVNITEHHLVPXH 541 +E F E L+VNIT H LVP H Sbjct: 131 TIETFNEAALVVNITHHELVPKH 153
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 75.1 bits (183), Expect = 1e-13 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 13/152 (8%) Frame = +2 Query: 125 DGDNKR----LFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEK 292 D DN+R L+R RTV +M+RDRGY + +E LSL +F +Y DS+ R + + + Sbjct: 2 DQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQ 61 Query: 293 DG--------DPN-DXVDVFFLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPAR 445 PN V V F DE G+ +++ + + ++N GI I Q ++ A Sbjct: 62 SNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSAL 121 Query: 446 TEVSQSKKYRLEVFQEGELLVNITEHHLVPXH 541 + +E F E L+VNIT H LVP H Sbjct: 122 KLLPSVAPATIETFNETALVVNITHHELVPKH 153
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 74.7 bits (182), Expect = 2e-13 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Frame = +2 Query: 122 SDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGD 301 +D RL+R RTV +M+RDRGY + +E L+L +F +Y DS+ R + + + Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64 Query: 302 PNDXVDVF---------FLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEV 454 + + F F DE G+ +++ + ++++ GI I Q ++ A V Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124 Query: 455 SQSKKYRLEVFQEGELLVNITEHHLVPXHELLN 553 +E F E L+VNIT H LVP H LN Sbjct: 125 PSIPPATIETFHEAALVVNITHHDLVPKHIRLN 157
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 70.1 bits (170), Expect = 4e-12 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Frame = +2 Query: 140 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRY---GDSVRRDEIVIHCEKDGDPND 310 R+FR +T Q++ DRGY V E L+L +F + G ++ R + + + D N Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNK 69 Query: 311 -XVDVFFLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALS-GPARTEVSQSKKYRLEV 484 + + F E G+ +R+ + + N GILI +++ A+ + + ++ +E Sbjct: 70 GTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIET 129 Query: 485 FQEGELLVNITEHHLVPXHELLN 553 FQE +L+VNIT H LVP H LL+ Sbjct: 130 FQESDLIVNITHHELVPKHILLS 152
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 67.4 bits (163), Expect = 3e-11 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Frame = +2 Query: 116 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKD 295 M+SD D ++L++V RT ++++DRGY + D E LS +FV D + + C Sbjct: 1 MSSD-DAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMA 59 Query: 296 GDPNDXVDVF---------FLDESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPART 448 + ++ F F +E+ + +R+ + + GIL+ + ++ A Sbjct: 60 SPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANR 119 Query: 449 EVSQSKKYRLEVFQEGELLVNITEHHLVPXH 541 + ++ FQE +LLVNIT+H LVP H Sbjct: 120 LIPSVAPATIDTFQETDLLVNITKHVLVPTH 150
>YL116_MIMIV (Q5UPJ3) Hypothetical protein L116| Length = 563 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Frame = +1 Query: 430 ERPRPDRGLTEQEVPPRGLPGRGASCE------HYGTPSRSXARAPE 552 ERP+P + +++V + RG SCE Y +P RS R+PE Sbjct: 103 ERPQPKTTMDDKQVVVTFITERGRSCELSSERSRYRSPERSRYRSPE 149
>RASF1_HUMAN (Q9NS23) Ras association domain-containing protein 1| Length = 344 Score = 30.4 bits (67), Expect = 3.5 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = +2 Query: 149 RVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRR----DEIVIHCEKDGDPNDXV 316 R R + +LR +LV DD K +L+E +R+G R DE + P+D Sbjct: 225 RAREVIEALLRK--FLVVDDPRKFALFERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKA 282 Query: 317 DVFFLDESXTG 349 F L E+ +G Sbjct: 283 LSFVLKENDSG 293
>CSN3_XENLA (Q7ZTN8) COP9 signalosome complex subunit 3 (Signalosome subunit 3)| Length = 423 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +2 Query: 350 LGVVRSCLDKMKQQNV-----TXGILILQKALSGPARTEVSQSKKYRLEVFQEGELLVNI 514 +G+V+ CL + ++N+ T L LQ S + +++KY L + ++GE+ +I Sbjct: 292 MGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASI 351 Query: 515 TE 520 + Sbjct: 352 NQ 353
>CSN3_MOUSE (O88543) COP9 signalosome complex subunit 3 (Signalosome subunit 3)| (SGN3) (JAB1-containing signalosome subunit 3) Length = 422 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +2 Query: 350 LGVVRSCLDKMKQQNV-----TXGILILQKALSGPARTEVSQSKKYRLEVFQEGELLVNI 514 +G+V+ CL + ++N+ T L LQ S + +++KY L + ++GE+ +I Sbjct: 291 MGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASI 350 Query: 515 TE 520 + Sbjct: 351 NQ 352
>CSN3_HUMAN (Q9UNS2) COP9 signalosome complex subunit 3 (Signalosome subunit 3)| (SGN3) (JAB1-containing signalosome subunit 3) Length = 422 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +2 Query: 350 LGVVRSCLDKMKQQNV-----TXGILILQKALSGPARTEVSQSKKYRLEVFQEGELLVNI 514 +G+V+ CL + ++N+ T L LQ S + +++KY L + ++GE+ +I Sbjct: 291 MGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASI 350 Query: 515 TE 520 + Sbjct: 351 NQ 352
>YG3C_YEAST (P53280) Hypothetical 128.8 kDa protein in PAS2-PRS5 intergenic| region Length = 1122 Score = 29.3 bits (64), Expect = 7.9 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +2 Query: 332 DESXTGLGVVRSCLDKMKQQNVTXGILILQKALSGPARTEVSQSKKYRLEVFQEGEL-LV 508 DE G G+ S D KQ ++A+ G RT Q + Y E+ Q+G L + Sbjct: 249 DEGNAGSGLDDSRFDHQKQP---------REAIMG--RTINDQEQIYSFELNQDGTLEIP 297 Query: 509 NITEHHLVPXHELL 550 N+ EH L+ HELL Sbjct: 298 NVMEHSLL-RHELL 310
>EAF5_ASHGO (Q757R4) Chromatin modification-related protein EAF5| Length = 221 Score = 29.3 bits (64), Expect = 7.9 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%) Frame = +2 Query: 122 SDGD----NKRLFRVRRTVLQMLRD-RGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHC 286 SDG N ++ +R T+L ++R+ + LVKD + Y+ ++ + D R E ++ Sbjct: 69 SDGQIIFYNLQIVEIRDTLLDVVRECQDTLVKDVKQLEQQYQAIKSHDDMKIRRERIMGM 128 Query: 287 EKD---GDPNDXVDVFFLDESXTGLGVVRSCLD--KMKQ---QNVTXGILILQKALSGPA 442 +D L VVR +D ++K +N++ ILQK ++ Sbjct: 129 YRDTILAKLQSFQHFHRLYSKLDPSPVVRDMMDLERIKATSIENLSHLQHILQKCVTDSV 188 Query: 443 RTEVSQSKKYRLEVFQEGEL 502 T + S +YR + +GEL Sbjct: 189 MTTKAGSDRYREIILSQGEL 208 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,978,773 Number of Sequences: 219361 Number of extensions: 817028 Number of successful extensions: 3140 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3123 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
