ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08b01 |
|---|---|
| Clone Library Name | barley_pub |
>VPS29_MOUSE (Q9QZ88) Vacuolar protein sorting 29 (Vesicle protein sorting 29)| Length = 182 Score = 175 bits (443), Expect = 9e-44 Identities = 78/110 (70%), Positives = 92/110 (83%) Frame = +1 Query: 220 VLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKSLCPDLHITR 399 +LVL LGDLHIPHR LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK+L D+HI R Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60 Query: 400 GEYDEDARYPETXTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDI 549 G++DE+ YPE VT+GQFK+GL HGHQV+PWGD+ SLA+LQRQ DVDI Sbjct: 61 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDI 110
>VPS29_HUMAN (Q9UBQ0) Vacuolar protein sorting 29 (Vesicle protein sorting 29)| (hVPS29) (PEP11) Length = 182 Score = 175 bits (443), Expect = 9e-44 Identities = 78/110 (70%), Positives = 92/110 (83%) Frame = +1 Query: 220 VLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKSLCPDLHITR 399 +LVL LGDLHIPHR LPAKFK +LVPGKIQHI+CTGNLC KE +DYLK+L D+HI R Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60 Query: 400 GEYDEDARYPETXTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDI 549 G++DE+ YPE VT+GQFK+GL HGHQV+PWGD+ SLA+LQRQ DVDI Sbjct: 61 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDI 110
>PEP11_YEAST (P38759) Protein PEP11| Length = 282 Score = 75.1 bits (183), Expect = 1e-13 Identities = 51/131 (38%), Positives = 65/131 (49%), Gaps = 21/131 (16%) Frame = +1 Query: 220 VLVLALGDLHIPHRAPDLPAKFKSML-VPGKIQHIICTGNLCIKEVHDYLK---SLCPDL 387 +L+LAL D HIP RA DLP KFK +L VP KI + GN + +D+LK + ++ Sbjct: 1 MLLLALSDAHIPDRATDLPVKFKKLLSVPDKISQVALLGNST--KSYDFLKFVNQISNNI 58 Query: 388 HITRGEYDED-----------------ARYPETXTVTIGQFKLGLCHGHQVVPWGDLDSL 516 I RGE+D P + G K+G C G+ VVP D SL Sbjct: 59 TIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSL 118 Query: 517 AMLQRQLDVDI 549 L RQLDVDI Sbjct: 119 LALARQLDVDI 129
>Y623_METJA (Q58040) Putative metallophosphoesterase MJ0623 (EC 3.1.4.-)| Length = 192 Score = 44.7 bits (104), Expect = 2e-04 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Frame = +1 Query: 220 VLVLALGDLHIPHRAPDLP-AKFKSMLVPGKIQHIICTGNLCIKEVHDYLKSLCPDLHIT 396 +L+ + D H+ RA +LP A F + II G++ KE+ D LK L + + Sbjct: 34 MLIGVISDTHLYDRAFELPKAVFDEF---SNVDLIIHCGDVTDKEILDSLKDLAKVVAV- 89 Query: 397 RGEYDEDARYPETXTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDI 549 +G D P + I K+G+ HG V P GD L +L +++ VD+ Sbjct: 90 KGNMDY-LNLPRKEILEINDIKIGVIHGDVVYPRGDRLKLRLLGKEMGVDV 139
>FTSK_CHLTE (Q8KBK0) DNA translocase ftsK| Length = 804 Score = 32.0 bits (71), Expect = 1.2 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Frame = +1 Query: 208 SNPMVLVLALGDLHIPHRAPDLPAKFKSMLV-PGKIQHIICTGNLCIK-EVHDYLKSLCP 381 S P+V+ + ++ P AP P + M++ PG + +K HD++K P Sbjct: 260 SEPVVIPAEVEEIRTPEPAPVRPEEGPEMIIKPGVQEAEADLDERALKVRTHDHVKYRFP 319 Query: 382 DLHITRGEYDEDARYPE 432 + + R DED Y E Sbjct: 320 SIDLLRRPKDEDESYDE 336
>G7C_HUMAN (Q9Y334) Protein G7c precursor| Length = 852 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 9/41 (21%) Frame = +3 Query: 237 GRSAHPAP---------CARPARQVQVHARPGQDPAHHLHR 332 GR A+P P + PA QV+ H P Q PAHH +R Sbjct: 810 GREANPVPPTHAFLRLLVSAPAPQVRNHYFPSQGPAHHPYR 850
>CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 387 Score = 31.6 bits (70), Expect = 1.5 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 12/61 (19%) Frame = +3 Query: 198 RSPIKSNGAGLGAGRSAH-----------PAPCARPARQVQVH-ARPGQDPAHHLHREPL 341 RS +S+G G + SA PAP PAR V A P PA H H P Sbjct: 131 RSNRRSSGFGAASAASAAAPAAPTSSSRAPAPTTAPARAVPTRTAAPATAPAAHAHHAPA 190 Query: 342 H 344 H Sbjct: 191 H 191
>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin Length = 1647 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Frame = +3 Query: 159 GLRDSDHTTTQPPRSPIKSNGAGL-----GAGRSAHPAPCARPARQVQVHARPGQDP 314 G+R H PP SP+ + G G+ ++ P P + P+ Q+ + PG P Sbjct: 97 GMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP 153
>CJ035_HUMAN (Q96D05) Protein C10orf35| Length = 121 Score = 31.2 bits (69), Expect = 2.0 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Frame = +3 Query: 138 RVLGEQSGLRDSD---HTTTQPPRSPIKSNGAGLGAGRSAHPAPCARPA-RQVQVHARPG 305 R+L ++D D TTTQPPR I H AP P RQ Q AR G Sbjct: 3 RILANGEIVQDDDPRVRTTTQPPRGSIPRQ----SFFNRGHGAPPGGPGPRQQQAGARLG 58 Query: 306 --QDPAHHLHREPLHQG 350 Q P + L+R+ ++ G Sbjct: 59 AAQSPFNDLNRQLVNMG 75
>TF2B_PYRAE (Q8ZWS3) Transcription initiation factor IIB (TFIIB)| Length = 333 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/56 (25%), Positives = 33/56 (58%) Frame = -2 Query: 414 LIIFTSGNVEIRTKAFKVVVNFLDAEVPGADDVLDLARDEHGLELGGQVGRTVRDV 247 L+ +T + + +++++ L+ +VP +D +L ++R L+L G+V +T D+ Sbjct: 210 LVRYTKASRREVARCYRLLLRELNVKVPISDPILYISRIAEQLKLSGEVVKTAIDI 265
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/65 (30%), Positives = 22/65 (33%) Frame = +3 Query: 147 GEQSGLRDSDHTTTQPPRSPIKSNGAGLGAGRSAHPAPCARPARQVQVHARPGQDPAHHL 326 G G + H S GAG GAG +A P P Q H P P H Sbjct: 127 GSSGGTSPTHHNNNNGEGFEPPSGGAGAGAGAAAPPPPLHH--LHPQSHPHPHPHPHSHP 184 Query: 327 HREPL 341 H L Sbjct: 185 HPHAL 189
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/51 (31%), Positives = 21/51 (41%) Frame = +3 Query: 195 PRSPIKSNGAGLGAGRSAHPAPCARPARQVQVHARPGQDPAHHLHREPLHQ 347 P P + +G RS HPAP + Q+Q P H+ P HQ Sbjct: 381 PHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQ 431
>SPEB_BLOFL (Q7VRG4) Agmatinase (EC 3.5.3.11) (Agmatine ureohydrolase) (AUH)| Length = 303 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -3 Query: 314 WILPGTSMDLNLAGRSGARCGMCRSPSAKTSTIGFDWRS-RW 192 W++ G D+ +GRSG+R G S + ++I W + RW Sbjct: 35 WVITGVPFDIATSGRSGSRFG---PASIRKASINLAWENCRW 73
>SPEB_NEIMB (P60654) Agmatinase (EC 3.5.3.11) (Agmatine ureohydrolase) (AUH)| Length = 307 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -3 Query: 314 WILPGTSMDLNLAGRSGARCGMCRSPSAKTSTIGFDWRSR 195 W++ G D+ ++GRSGAR G + + +++ W R Sbjct: 37 WVITGVPYDMAVSGRSGARFG---PEAIRRASVNLAWEHR 73
>SPEB_NEIMA (P60653) Agmatinase (EC 3.5.3.11) (Agmatine ureohydrolase) (AUH)| Length = 307 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -3 Query: 314 WILPGTSMDLNLAGRSGARCGMCRSPSAKTSTIGFDWRSR 195 W++ G D+ ++GRSGAR G + + +++ W R Sbjct: 37 WVITGVPYDMAVSGRSGARFG---PEAIRRASVNLAWEHR 73
>SPEB_NEIG1 (Q5F6R3) Agmatinase (EC 3.5.3.11) (Agmatine ureohydrolase) (AUH)| Length = 307 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -3 Query: 314 WILPGTSMDLNLAGRSGARCGMCRSPSAKTSTIGFDWRSR 195 W++ G D+ ++GRSGAR G + + +++ W R Sbjct: 37 WVITGVPYDMAVSGRSGARFG---PEAIRRASVNLAWEHR 73
>AL_DROME (Q06453) Homeobox protein aristaless| Length = 408 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +3 Query: 162 LRDSDHTTTQPPRSPIKSNGAGLGAGRSAHPAPCARPARQVQVHARPGQDPAHHL 326 L +H PP SP + + +AHP P P Q+ V +P Q HL Sbjct: 269 LHSPNHMLASPPTSPASGHASQHQQHPTAHPPPPQAPP-QMPVGVQPAQLSPQHL 322
>GUAA_HELHP (Q7VG78) Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 1375 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +1 Query: 406 YDEDARYPETXTVTIGQFKLGLCHGHQVV 492 Y++DA P++ T+G LG+C+G Q++ Sbjct: 62 YEKDAYKPDSAIFTLGIPILGICYGMQLI 90
>DNAJ_STRT2 (Q5M6D0) Chaperone protein dnaJ| Length = 377 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 427 PETXTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDI 549 P T VT G+ CHGH V+ L M++RQ+ D+ Sbjct: 156 PGTSPVTCGR-----CHGHGVINVDTQTPLGMMRRQVTCDV 191
>DNAJ_STRT1 (Q5M1T7) Chaperone protein dnaJ| Length = 377 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 427 PETXTVTIGQFKLGLCHGHQVVPWGDLDSLAMLQRQLDVDI 549 P T VT G+ CHGH V+ L M++RQ+ D+ Sbjct: 156 PGTSPVTCGR-----CHGHGVINVDTQTPLGMMRRQVTCDV 191
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +3 Query: 195 PRSPIKSNGAGLGAGRSAHPAPCARPARQVQVHARPGQDPAHHLHREPLHQ 347 P +P + +G R HPAP + Q+Q P H+ P HQ Sbjct: 382 PHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHIQHHPNHQ 432
>GAT14_ARATH (Q9FH57) GATA transcription factor 14| Length = 339 Score = 28.9 bits (63), Expect = 10.0 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Frame = -3 Query: 518 ARESRSPHGTT*WPWHSPSLNWPIVTVLVSG*RASSSYSPLVMWRSGQRLLR*S*TSLMQ 339 AR R+ +G W S S + P SG +SSS P W SG LL TS Sbjct: 168 ARSKRNRNGLKVWSLGSSSSSGPSS----SGSTSSSSSGPSSPWFSGAELLEPVVTSERP 223 Query: 338 RFP----VQMMCWILPGTSMDLNLAGRSGARCGMCRSPSAKTSTIGFDWRSRWLC-GCVI 174 FP + + G L R + CG+ ++P + +G ++ LC C + Sbjct: 224 PFPKKHKKRSAESVFSGELQQLQ-PQRKCSHCGVQKTPQWRAGPMG----AKTLCNACGV 278 Query: 173 RIPQPALL 150 R LL Sbjct: 279 RYKSGRLL 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,005,507 Number of Sequences: 219361 Number of extensions: 1681151 Number of successful extensions: 5588 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5575 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
