>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +2

Query: 53  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 232
           + FD+D+ +YP S  I+      I  +  DKL I      ++    YR YG  + GL ++
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VL 66

Query: 233 GYDFHYHEFHASVHGKLPYEK-LKPDPVLRSLL 328
            ++    ++   V   LP EK +K D VLR +L
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREML 99

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +2

Query: 59  FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 238
           FD+D+T+Y  S  + L  ++++ ++   +L  ++    ++    Y+EYG ++ GL     
Sbjct: 57  FDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQ 116

Query: 239 DFHYHEFHASVHGKLPYEK-LKPDPVLRSLL 328
                +++  +   LP +  LKPD  LR LL
Sbjct: 117 IDDVLQYNTFIDDSLPLQDYLKPDWKLRELL 147

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +2

Query: 59  FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 238
           FD+D+ +Y  S  I+   +++I  +    L++       +    Y+EYG  + GL +M +
Sbjct: 60  FDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 118

Query: 239 DFHYHEFHASVHGKLPYEK-LKPDPVLRSLL 328
             +  E++  V   LP +  LKPD  LR++L
Sbjct: 119 KVNALEYNRLVDDSLPLQDILKPDIPLRNML 149

>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger
           protein A20)
          Length = 790

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 186
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNQRMGPGAHRGEPAPEDPPK 759

>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-)
          Length = 790

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 186
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNPRMGPGAHRGEPAPEDPPK 759

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 194 CTNLGTSWGPGSPRSEVCPACSLG 123
           C  LG +WG    R E+ PAC+ G
Sbjct: 835 CATLGAAWGSPCERCEIDPACARG 858

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 173 WGPGSPRSEVCPACSLGCSCGMLS*FPSSGGRWCHP 66
           WG G    E+CPAC  G SC      P +G   C P
Sbjct: 782 WGLGC--QEICPACEHGASCN-----PETGTCLCLP 810

>Y1655_PYRHO (O59346) Putative HAD-hydrolase PH1655 (EC 3.-.-.-)|
          Length = 241

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +2

Query: 53  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 232
           + FD+DDT+   S    +A +  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGS-------- 56

Query: 233 GYDFHYHEFHASVHGKLPY 289
             +F YH  +      LPY
Sbjct: 57  --NFPYHFDYLLRRLDLPY 73

>YB10_PYRAB (Q9V1B3) Putative HAD-hydrolase PYRAB05140 (EC 3.-.-.-)|
          Length = 238

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 53  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGT 208
           + FD+DDT+   +    LA R  I++ +   L ++        ++L +EYG+
Sbjct: 5   IFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGS 56

>PRTP_MCMVS (P30674) Probable processing and transport protein (Infected cell|
           protein 18.5)
          Length = 798

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
 Frame = +2

Query: 104 LACRKNIQDYMLDKLQIEESLVPKMCLD---------LYREYGTTMAGL-----KLMGYD 241
           +AC +N Q++++ KL +  +LV  +CL+         L R+   T A       + +GYD
Sbjct: 499 MACIRN-QEHLVTKL-VNVNLVGTVCLEAVSKIMNGFLSRQRSITEAETYPDVAESLGYD 556

Query: 242 FHYHEFHASVHGKLPYEKL 298
            H +  +  VH +LP E L
Sbjct: 557 EHLYVINNLVHKRLPSELL 575

>LPXH_VIBCH (Q9KQZ7) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)|
          Length = 242

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
 Frame = +2

Query: 26  YAHGAQFDCLLFDMDDTIYPLSL----------GINLACRKNIQDYMLDKLQIEES---- 163
           Y  G  FD  + D D T +   +          G+     K  +D+++ K   +++    
Sbjct: 37  YVLGDLFDFWIGDDDPTTFAEQIKSEFRQLTQQGVPCYFTKGNRDFLVGKRFAQQTGVQL 96

Query: 164 LVPKMCLDLYREYGTTMAGLKLMGYDFHYHEFHASVH 274
           L  +  +DLY +    + G  L   D  Y EF A VH
Sbjct: 97  LPDEAVIDLYGQKAVVLHGDTLCTQDTRYLEFRAKVH 133

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +1

Query: 82   PPELGNQLSMPQEHPRLHAGQTSDRGEPGPQDVPRFVQGIRNYNGRSETYG 234
            PP     +  P E      G   DRG+PGPQ  P    G R   G S   G
Sbjct: 1989 PPGKEGPIGFPGER-----GLKGDRGDPGPQGPPGLALGERGPPGPSGLAG 2034

>SFSA_BARQU (Q6FZU1) Sugar fermentation stimulation protein homolog|
          Length = 234

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 134 MLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGYDFHYHEFHASVHGKLPYEKLK 301
           ML  +Q E+     +C DL   YG         G +F+  + H SV G  P  ++K
Sbjct: 175 MLYMIQREDCSAFTICRDLDPTYGRKFDLALKSGVEFYAVKCHVSVEGIFPIHRVK 230

>IPF1_HUMAN (P52945) Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum|
           homeobox 1) (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin-transactivating factor 1) (STF-1) (Insulin
           upstream factor 1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +1

Query: 52  PAV*HG*HHLPPELGNQLSMPQEHPRLHAGQTSDRGEPGPQDVPRFVQ 195
           PAV H  HHLP     QL++P  HP   AG   +  EPG  + P  VQ
Sbjct: 77  PAVAHLHHHLPA----QLALP--HP--PAGPFPEGAEPGVLEEPNRVQ 116

>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC|
           3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 449

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 59  FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMG 235
           F   D +Y   L       KNI+ +  D  ++ E     +CL+ YR+Y    A   L G
Sbjct: 88  FGCQDYVYQTELETLRFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRG 146

>Y209_METTH (O26311) Putative HAD-hydrolase MTH209 (EC 3.-.-.-)|
          Length = 226

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 53  LLFDMDDTIYPLSLGINLACRKNIQDYMLDK-LQIEESLVPKMCLDLYREYGTTMAGLKL 229
           + FD+DDT+Y  S G     RK   + M+D  L + +    K+  ++  E G+       
Sbjct: 5   VFFDIDDTLYDTS-GFAKLARKAALNVMIDAGLPLTQEEAYKLLREIISEKGS------- 56

Query: 230 MGYDFHYHEFHASVHGK 280
             YD H++    +V G+
Sbjct: 57  -NYDRHFNVLTKTVFGE 72

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 197 PCTNLGTSWGPGSPRSEVCPACSLGCSCGM 108
           PCT+ G ++ PG+  +  C +C+  CS G+
Sbjct: 387 PCTHGGRTYSPGTSFNTTCSSCT--CSGGL 414

>TIP_SHV24 (P25049) Tyrosine-protein kinase-interacting protein (Tip)|
          Length = 214

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 275 RARWRGI--HGSGNRSP*VSDRPL*FRIPCTNLGTSWGPGSPRSEVCP-ACSLGCS 117
           RA+ +G+  H S +    +   P  +R P  +L  SW PG P+  + P   +LG S
Sbjct: 92  RAQGKGLVRHNSDDLKSFLEKYPPDYRKPKRDLSESWDPGMPKPTLPPRPANLGAS 147

>SYI_PYRAE (Q8ZWU4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 981

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 98  INLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKL 229
           + L  +K+I+ + L+K  +E + + +  L  +RE+GT   GL L
Sbjct: 102 LKLRSKKDIEQFGLEKFALECNSLVEEYLAYWREWGTKRLGLWL 145

>HSC20_HUMAN (Q8IWL3) Co-chaperone protein HscB, mitochondrial precursor (Hsc20)|
          Length = 235

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 194 CTNLGTSWGPGSPRSEVCPAC 132
           C N G  WGPG      CP C
Sbjct: 41  CWNCGGPWGPGREDRFFCPQC 61

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 73  HHLPPELGNQLSMPQEHPRLHAGQTSDRGEPGPQ-DVPRFVQGIRNYNGRS 222
           +HL  E G Q      + R   G+ S+ G+PG + D+  FV+    Y+G S
Sbjct: 368 NHLAAEEGGQRGEGPANGRGEDGEASEEGDPGQEHDITLFVKA--GYDGES 416

>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like|
           domain-containing protein 3) (Multiple EGF-like domain
           protein 3) (Fragment)
          Length = 656

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
 Frame = -3

Query: 197 PCTNLGTSWGPGSPRSEVCPACSLGCSCGMLS*FPSSGGRWCHP----CQTAGSQIGLRG 30
           P    GT+      R    P C+L C CG        GG  C P    C    S  G   
Sbjct: 581 PPGRAGTTCDLDCRRGRFGPGCALRCDCG--------GGADCDPISGQCHCVDSYTGPTC 632

Query: 29  RRIPS 15
           R +P+
Sbjct: 633 REVPT 637

>TRUA_VIBPA (Q87MP1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
 Frame = -1

Query: 274 VHAGVEFMVVEIVAHKFQTGHCSSVFPVQI*AHL-----GDQALLDLK---FVQH 134
           +H   ++++ E     F+  HC S+ P +   HL     GD  ++D+K   FV H
Sbjct: 139 MHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHGDYVVIDIKANAFVHH 193

>PTC1_CHICK (Q90693) Protein patched homolog 1 (PTC1) (PTC)|
          Length = 1442

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 88   ELGNQLSMPQEHPRLHAGQTSDRGEPGPQDVPRFVQGIRNYNGRSETYG 234
            E+   L  P   PR  A + S  G  GP +  R      ++N RS  +G
Sbjct: 1302 EVREGLRPPPYRPRRDAFEISTEGHSGPSNKDRLNHKAHSHNMRSPAFG 1350

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 152  SEVCPACSLGCSCGMLS*FPSSGGRWCHPCQ 60
            S +C + +  CSC      PS+ GR CH CQ
Sbjct: 957  SHICNSVTGQCSCHD----PSTTGRSCHQCQ 983

>APY_SOLTU (P80595) Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase)|
           (Adenosine diphosphatase) (ADPase)
           (ATP-diphosphohydrolase)
          Length = 454

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +2

Query: 71  DTIYPLSLG--------INLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLK 226
           DT +P +L           +AC+ N+ D      + ++  +P +C+DL  EY   + G  
Sbjct: 350 DTKFPSALAKPIQYLNAAKVACQTNVADIKSIFPKTQDRNIPYLCMDLIYEYTLLVDGFG 409

Query: 227 L 229
           L
Sbjct: 410 L 410

>Y1777_PYRFU (Q8U040) Putative HAD-hydrolase PF1777 (EC 3.-.-.-)|
          Length = 240

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 53  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGT 208
           + FD+DDT+   S    +A +  I++ +   + ++        L+L +EYG+
Sbjct: 7   IFFDLDDTLVDTSKLAEVARKNAIENMIRHGMPVDFDTAYNELLELIKEYGS 58

>Y1437_METJA (Q58832) Putative HAD-hydrolase MJ1437 (EC 3.-.-.-)|
          Length = 228

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +2

Query: 53  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 232
           +LFD+DDT+Y  S  + +A R+ ++  +   L I+      +   + ++ G+        
Sbjct: 5   ILFDLDDTLYNSSEFVEIARREAVKSMIDAGLNIDFEEAMNILNKIIKDKGS-------- 56

Query: 233 GYDFHYHEFHASVHGK 280
            Y  H+ +   +V GK
Sbjct: 57  NYGKHFDDLVKAVLGK 72

>YQY2_CAEEL (Q09318) Hypothetical protein F36G3.2|
          Length = 313

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 122 IQDYMLDKLQIEESL----VPKMCLDLYREYGTTMAGLKLMGYDFHYHEFHASV 271
           I D  + ++  + +L    VP M +D YR+  T   G  L  Y     E+HAS+
Sbjct: 95  IWDIAMSRMPADHTLGLRGVPSM-VDKYRKKATPFVGATLENYKMKVAEYHASM 147

>DUS23_HUMAN (Q9BVJ7) Dual specificity protein phosphatase 23 (EC 3.1.3.48) (EC|
           3.1.3.16) (Low molecular mass dual specificity
           phosphatase 3) (LDP-3) (VH1-like phosphatase Z)
          Length = 150

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 130 LHAGQTSDRGEPGPQDVPRFVQGIRNYNGRSETYGLRFPL 249
           LH  +  D   P P  + RFVQ +   N R E  G+   L
Sbjct: 58  LHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCAL 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,986,453
Number of Sequences: 219361
Number of extensions: 996638
Number of successful extensions: 3298
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3293
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)