ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102566.1| Oryza sativa (japonica cultivar-group) cDNA clon... 498 e-138
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 349 4e-93
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 349 4e-93
4emb|CR555306.1| Azoarcus sp. EbN1 complete genome 44 0.33
5gb|BT017731.1| Zea mays clone EL01N0448B12.c mRNA sequence 42 1.3
6ref|XM_807668.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.3
7ref|XM_809026.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.3
8gb|AC093709.2| Pan troglodytes clone RP43-180A19, complete sequence 42 1.3
9gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 42 1.3
10gb|AC092406.3| Papio anubis clone RP41-326L21, complete sequence 42 1.3
11gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence 42 1.3
12gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromoso... 42 1.3
13gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.3
14gb|AC147785.3| Pan troglodytes BAC clone RP43-147G4 from chromos... 42 1.3
15dbj|AK106143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
16dbj|AK104374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
17dbj|AK101500.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
18dbj|AK071579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
19ref|NM_210003.1| Eremothecium gossypii AEL211Wp (AEL211W), mRNA 42 1.3
20gb|AY104920.1| Zea mays PCO100740 mRNA sequence 42 1.3
21gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromos... 42 1.3
22gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.2
23gb|AC145198.3| Mus musculus BAC clone RP23-396H3 from chromosome... 40 5.2
24emb|AJ564185.1|FVE564185 Fragaria vesca microsatellite DNA, clon... 40 5.2
25emb|AJ564183.1|FVE564183 Fragaria vesca microsatellite DNA, clon... 40 5.2
26emb|AJ508253.2|FVE508253 Fragaria vesca microsatellite DNA, clon... 40 5.2
27emb|AJ508248.1|FVE508248 Fragaria vesca microsatellite DNA, clon... 40 5.2
28emb|AJ508244.1|FVE508244 Fragaria vesca microsatellite DNA, clon... 40 5.2
29ref|XM_723629.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.2
30gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.2
31ref|XM_967461.1| PREDICTED: Tribolium castaneum similar to CG670... 40 5.2
32emb|AJ002070.1|XCAJ2070 Xanthomonas campestris rpfA gene, complete 40 5.2
33gb|DQ027015.1| Chlamydomonas reinhardtii MCD1 (MCD1) mRNA, compl... 40 5.2
34gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.2
35dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.2
36gb|AE011792.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.2
37gb|AE012541.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.2
38gb|AE012288.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.2
39dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 5.2
40gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.2
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
42gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.2
43dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.2
44dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.2
46gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.2 
>dbj|AK102566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097K23, full
           insert sequence
          Length = 1770

 Score =  498 bits (251), Expect = e-138
 Identities = 350/383 (91%)
 Strand = Plus / Plus

                                                                       
Query: 5   cgggataggggacgtgaccatcccgtccctcggcgggcgtacaccgctggaggcggcggc 64
           |||||| |||||||||| ||||||||| ||| | ||||| || |||||||||||||||||
Sbjct: 155 cgggatcggggacgtgagcatcccgtcgctccgggggcggacgccgctggaggcggcggc 214

                                                                       
Query: 65  ggcaccgcggctggacgctgtggcggcggctggggtggtcgggctcatggaccccgtgga 124
           ||| ||| |||||||||| ||||||||||| |||||||  ||||||||||||||||| ||
Sbjct: 215 ggcgccggggctggacgcggtggcggcggccggggtggcggggctcatggaccccgtcga 274

                                                                       
Query: 125 gcccgggctcgcctgcggcagcgacacggcgcacctctccctcctcgggtacgatccccg 184
           ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 275 gccggggctcgcctgcgggagcgacacggcgcacctctccctcctcgggtacgacccccg 334

                                                                       
Query: 185 cgtatactaccgcggccgcggcgcgttcgagtccatgggcgccggcctcgccatggcccc 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cgtgtactaccgcggccgcggcgcgttcgagtccatgggcgccggcctcgccatggcccc 394

                                                                       
Query: 245 gggcgacatcgccttcaagtcgaactttgctacattggacgaaagcacgggggttattgt 304
            |||||||||||||||||||| ||||||||||| ||||| |||||||||||| | |||||
Sbjct: 395 cggcgacatcgccttcaagtcaaactttgctacgttggatgaaagcacggggatcattgt 454

                                                                       
Query: 305 cagcaggagggcggataggcactttgaagaggaaggcccaatcctctgtgcagcattaga 364
           |||||| ||||||||| | |||||||| ||||||||||| || |||||||| ||||| ||
Sbjct: 455 cagcagaagggcggatcgacactttgaggaggaaggcccgatactctgtgctgcattgga 514

                                  
Query: 365 tgggatgaagctcccatcgtttc 387
           |||| ||||||||||||||||||
Sbjct: 515 tgggttgaagctcccatcgtttc 537
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  349 bits (176), Expect = 4e-93
 Identities = 240/260 (92%), Gaps = 1/260 (0%)
 Strand = Plus / Minus

                                                                            
Query: 5        cgggataggggacgtgaccatcccgtccctcggcgggcgtacaccgctggaggcggcggc 64
                |||||| |||||||||| ||||||||| ||| | ||||| || |||||||||||||||||
Sbjct: 21363375 cgggatcggggacgtgagcatcccgtcgctccgggggcggacgccgctggaggcggcggc 21363316

                                                                            
Query: 65       ggcaccgcggctggacgctgtggcggcggctggggtggtcggg-ctcatggaccccgtgg 123
                ||| ||| |||||||||| ||||||||||| |||||||  ||| |||||||||||||| |
Sbjct: 21363315 ggcgccggggctggacgcggtggcggcggccggggtggcgggggctcatggaccccgtcg 21363256

                                                                            
Query: 124      agcccgggctcgcctgcggcagcgacacggcgcacctctccctcctcgggtacgatcccc 183
                |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21363255 agccggggctcgcctgcgggagcgacacggcgcacctctccctcctcgggtacgaccccc 21363196

                                                                            
Query: 184      gcgtatactaccgcggccgcggcgcgttcgagtccatgggcgccggcctcgccatggccc 243
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21363195 gcgtgtactaccgcggccgcggcgcgttcgagtccatgggcgccggcctcgccatggccc 21363136

                                    
Query: 244      cgggcgacatcgccttcaag 263
                | ||||||||||||||||||
Sbjct: 21363135 ccggcgacatcgccttcaag 21363116



 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 262      agtcgaactttgctacattggacgaaagcacgggggttattgtcagcaggagggcggata 321
                |||| ||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||| 
Sbjct: 21362737 agtcaaactttgctacgttggatgaaagcacggggatcattgtcagcagaagggcggatc 21362678

                                                                            
Query: 322      ggcactttgaagaggaaggcccaatcctctgtgcagcattagatgggatgaagctcccat 381
                | |||||||| ||||||||||| || |||||||| ||||| |||||| ||||||||||||
Sbjct: 21362677 gacactttgaggaggaaggcccgatactctgtgctgcattggatgggttgaagctcccat 21362618

                      
Query: 382      cgtttc 387
                ||||||
Sbjct: 21362617 cgtttc 21362612
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  349 bits (176), Expect = 4e-93
 Identities = 240/260 (92%), Gaps = 1/260 (0%)
 Strand = Plus / Minus

                                                                            
Query: 5        cgggataggggacgtgaccatcccgtccctcggcgggcgtacaccgctggaggcggcggc 64
                |||||| |||||||||| ||||||||| ||| | ||||| || |||||||||||||||||
Sbjct: 21289594 cgggatcggggacgtgagcatcccgtcgctccgggggcggacgccgctggaggcggcggc 21289535

                                                                            
Query: 65       ggcaccgcggctggacgctgtggcggcggctggggtggtcggg-ctcatggaccccgtgg 123
                ||| ||| |||||||||| ||||||||||| |||||||  ||| |||||||||||||| |
Sbjct: 21289534 ggcgccggggctggacgcggtggcggcggccggggtggcgggggctcatggaccccgtcg 21289475

                                                                            
Query: 124      agcccgggctcgcctgcggcagcgacacggcgcacctctccctcctcgggtacgatcccc 183
                |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21289474 agccggggctcgcctgcgggagcgacacggcgcacctctccctcctcgggtacgaccccc 21289415

                                                                            
Query: 184      gcgtatactaccgcggccgcggcgcgttcgagtccatgggcgccggcctcgccatggccc 243
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21289414 gcgtgtactaccgcggccgcggcgcgttcgagtccatgggcgccggcctcgccatggccc 21289355

                                    
Query: 244      cgggcgacatcgccttcaag 263
                | ||||||||||||||||||
Sbjct: 21289354 ccggcgacatcgccttcaag 21289335



 Score =  139 bits (70), Expect = 8e-30
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 262      agtcgaactttgctacattggacgaaagcacgggggttattgtcagcaggagggcggata 321
                |||| ||||||||||| ||||| |||||||||||| | ||||||||||| ||||||||| 
Sbjct: 21288956 agtcaaactttgctacgttggatgaaagcacggggatcattgtcagcagaagggcggatc 21288897

                                                                            
Query: 322      ggcactttgaagaggaaggcccaatcctctgtgcagcattagatgggatgaagctcccat 381
                | |||||||| ||||||||||| || |||||||| ||||| |||||| ||||||||||||
Sbjct: 21288896 gacactttgaggaggaaggcccgatactctgtgctgcattggatgggttgaagctcccat 21288837

                      
Query: 382      cgtttc 387
                ||||||
Sbjct: 21288836 cgtttc 21288831
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 194     ccgcggccgcggcgcgttcgag 215
               ||||||||||||||||||||||
Sbjct: 2344633 ccgcggccgcggcgcgttcgag 2344612
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>gb|BT017731.1| Zea mays clone EL01N0448B12.c mRNA sequence
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  caccgctggaggcggcggcgg 66
           |||||||||||||||||||||
Sbjct: 147 caccgctggaggcggcggcgg 127
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>ref|XM_807668.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503879.20) partial mRNA
          Length = 1482

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  ggcggcggcggcaccgcggct 76
           |||||||||||||||||||||
Sbjct: 990 ggcggcggcggcaccgcggct 970
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>ref|XM_809026.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509455.60) partial mRNA
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  ggcggcggcggcaccgcggct 76
           |||||||||||||||||||||
Sbjct: 993 ggcggcggcggcaccgcggct 973
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>gb|AC093709.2| Pan troglodytes clone RP43-180A19, complete sequence
          Length = 195646

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    ggcggcggcggcaccgcggctggac 80
             |||||||||||||||| ||||||||
Sbjct: 53065 ggcggcggcggcaccgaggctggac 53089
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>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete
              sequence
          Length = 215829

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     cggcggcaccgcggctggacg 81
              |||||||||||||||||||||
Sbjct: 151471 cggcggcaccgcggctggacg 151491
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>gb|AC092406.3| Papio anubis clone RP41-326L21, complete sequence
          Length = 192030

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     ggcggcggcggcaccgcggctggac 80
              |||||||||||||||| ||||||||
Sbjct: 188355 ggcggcggcggcaccgaggctggac 188379
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>gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence
          Length = 135273

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ccgctggaggcggcggcggca 68
             |||||||||||||||||||||
Sbjct: 32773 ccgctggaggcggcggcggca 32793
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>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete
             sequence
          Length = 240564

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ccgctggaggcggcggcggca 68
             |||||||||||||||||||||
Sbjct: 33721 ccgctggaggcggcggcggca 33741
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    ggcgccggcctcgccatggcc 242
              |||||||||||||||||||||
Sbjct: 237692 ggcgccggcctcgccatggcc 237712
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>gb|AC147785.3| Pan troglodytes BAC clone RP43-147G4 from chromosome 7, complete sequence
          Length = 166701

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 56     ggcggcggcggcaccgcggctggac 80
              |||||||||||||||| ||||||||
Sbjct: 127831 ggcggcggcggcaccgaggctggac 127855
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>dbj|AK106143.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G11, full
           insert sequence
          Length = 1949

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  caccgctggaggcggcggcgg 66
           |||||||||||||||||||||
Sbjct: 132 caccgctggaggcggcggcgg 152
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>dbj|AK104374.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G01, full
           insert sequence
          Length = 1949

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  caccgctggaggcggcggcgg 66
           |||||||||||||||||||||
Sbjct: 132 caccgctggaggcggcggcgg 152
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>dbj|AK101500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043P15, full
           insert sequence
          Length = 1922

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  caccgctggaggcggcggcgg 66
           |||||||||||||||||||||
Sbjct: 118 caccgctggaggcggcggcgg 138
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>dbj|AK071579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102O20, full
           insert sequence
          Length = 1943

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  caccgctggaggcggcggcgg 66
           |||||||||||||||||||||
Sbjct: 139 caccgctggaggcggcggcgg 159
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>ref|NM_210003.1| Eremothecium gossypii AEL211Wp (AEL211W), mRNA
          Length = 1254

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 ggcgccggcctcgccatggcc 242
           |||||||||||||||||||||
Sbjct: 880 ggcgccggcctcgccatggcc 900
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>gb|AY104920.1| Zea mays PCO100740 mRNA sequence
          Length = 1562

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  caccgctggaggcggcggcgg 66
           |||||||||||||||||||||
Sbjct: 227 caccgctggaggcggcggcgg 207
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>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete
             sequence
          Length = 209348

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    ccgctggaggcggcggcggca 68
             |||||||||||||||||||||
Sbjct: 48276 ccgctggaggcggcggcggca 48256
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   atgggcgccggcctcgccat 238
             ||||||||||||||||||||
Sbjct: 72029 atgggcgccggcctcgccat 72048
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>gb|AC145198.3| Mus musculus BAC clone RP23-396H3 from chromosome 16, complete sequence
          Length = 201219

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    ggcctcgccatggccccggg 247
              ||||||||||||||||||||
Sbjct: 102600 ggcctcgccatggccccggg 102581
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>emb|AJ564185.1|FVE564185 Fragaria vesca microsatellite DNA, clone EMFv027
          Length = 371

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  ggcggcggcggcaccgcggc 75
           ||||||||||||||||||||
Sbjct: 173 ggcggcggcggcaccgcggc 154
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>emb|AJ564183.1|FVE564183 Fragaria vesca microsatellite DNA, clone EMFv025
          Length = 259

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  ggcggcggcggcaccgcggc 75
           ||||||||||||||||||||
Sbjct: 173 ggcggcggcggcaccgcggc 154
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>emb|AJ508253.2|FVE508253 Fragaria vesca microsatellite DNA, clone EMFv10
          Length = 371

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  ggcggcggcggcaccgcggc 75
           ||||||||||||||||||||
Sbjct: 173 ggcggcggcggcaccgcggc 154
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>emb|AJ508248.1|FVE508248 Fragaria vesca microsatellite DNA, clone EMFv5
          Length = 363

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ggcggcggcggcaccgcggc 75
           ||||||||||||||||||||
Sbjct: 192 ggcggcggcggcaccgcggc 211
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>emb|AJ508244.1|FVE508244 Fragaria vesca microsatellite DNA, clone EMFv1
          Length = 372

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ggcggcggcggcaccgcggc 75
           ||||||||||||||||||||
Sbjct: 198 ggcggcggcggcaccgcggc 217
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>ref|XM_723629.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07759)
            partial mRNA
          Length = 3192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  ctaccgcggccgcggcgcgt 210
            ||||||||||||||||||||
Sbjct: 1274 ctaccgcggccgcggcgcgt 1293
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    ggcgccggcctcgccatggc 241
              ||||||||||||||||||||
Sbjct: 602358 ggcgccggcctcgccatggc 602339
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>ref|XM_967461.1| PREDICTED: Tribolium castaneum similar to CG6700-PA (LOC661290),
           mRNA
          Length = 2061

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  ccgctggaggcggcggcggc 67
           ||||||||||||||||||||
Sbjct: 628 ccgctggaggcggcggcggc 609
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>emb|AJ002070.1|XCAJ2070 Xanthomonas campestris rpfA gene, complete
          Length = 3450

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   aggcggcggcggcaccgcgg 74
            ||||||||||||||||||||
Sbjct: 1773 aggcggcggcggcaccgcgg 1792
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>gb|DQ027015.1| Chlamydomonas reinhardtii MCD1 (MCD1) mRNA, complete cds
          Length = 5213

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   gaggcggcggcggcaccgcg 73
            ||||||||||||||||||||
Sbjct: 3820 gaggcggcggcggcaccgcg 3801
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 128     cgggctcgcctgcggcagcg 147
               ||||||||||||||||||||
Sbjct: 2072318 cgggctcgcctgcggcagcg 2072299
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      gaggcggcggcggcaccgcg 73
               ||||||||||||||||||||
Sbjct: 2462406 gaggcggcggcggcaccgcg 2462425
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>gb|AE011792.1| Xanthomonas axonopodis pv. citri str. 306,  section 170 of 469 of the
            complete genome
          Length = 10523

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  ccgcggccgcggcgcgttcg 213
            ||||||||||||||||||||
Sbjct: 3381 ccgcggccgcggcgcgttcg 3400
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>gb|AE012541.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 449
            of 460 of the complete genome
          Length = 10481

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   ggcggcggcggcaccgcggc 75
            ||||||||||||||||||||
Sbjct: 4107 ggcggcggcggcaccgcggc 4126
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>gb|AE012288.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 196
            of 460 of the complete genome
          Length = 9922

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   aggcggcggcggcaccgcgg 74
            ||||||||||||||||||||
Sbjct: 4047 aggcggcggcggcaccgcgg 4028
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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    ctccctcctcgggtacgatc 180
              ||||||||||||||||||||
Sbjct: 484493 ctccctcctcgggtacgatc 484474
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      aggcggcggcggcaccgcgg 74
               ||||||||||||||||||||
Sbjct: 2815636 aggcggcggcggcaccgcgg 2815655
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 184      gcgtatactaccgcggccgcggcg 207
                |||| |||||||||||||||||||
Sbjct: 30471415 gcgtctactaccgcggccgcggcg 30471438
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     ggcgccggcctcgccatggc 241
               ||||||||||||||||||||
Sbjct: 1858426 ggcgccggcctcgccatggc 1858445



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 191     ctaccgcggccgcggcgcgt 210
               ||||||||||||||||||||
Sbjct: 1813797 ctaccgcggccgcggcgcgt 1813816
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     ggcgccggcctcgccatggc 241
               ||||||||||||||||||||
Sbjct: 3429494 ggcgccggcctcgccatggc 3429475
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>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017G10
          Length = 166700

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    gcgtatactaccgcggccgcggcg 207
              |||| |||||||||||||||||||
Sbjct: 108776 gcgtctactaccgcggccgcggcg 108799
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      gaggcggcggcggcaccgcg 73
               ||||||||||||||||||||
Sbjct: 2482711 gaggcggcggcggcaccgcg 2482730
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     ggcgccggcctcgccatggc 241
               ||||||||||||||||||||
Sbjct: 1417732 ggcgccggcctcgccatggc 1417751


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,871,121
Number of Sequences: 3902068
Number of extensions: 2871121
Number of successful extensions: 78744
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77652
Number of HSP's gapped (non-prelim): 1090
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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