Clone Name | bart08a05 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 390 gctgacgttcttcatgcacgacatcct 416 ||||||||||||||||||||||||||| Sbjct: 9571732 gctgacgttcttcatgcacgacatcct 9571758
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 390 gctgacgttcttcatgcacgacatcct 416 ||||||||||||||||||||||||||| Sbjct: 9569853 gctgacgttcttcatgcacgacatcct 9569879
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 390 gctgacgttcttcatgcacgacatcct 416 ||||||||||||||||||||||||||| Sbjct: 40954 gctgacgttcttcatgcacgacatcct 40928
>dbj|AK110597.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-G01, full insert sequence Length = 1311 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 390 gctgacgttcttcatgcacgacatcct 416 ||||||||||||||||||||||||||| Sbjct: 383 gctgacgttcttcatgcacgacatcct 409
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 255 gcccgcgaccgcggcggtgatgc 277 ||||||||||||||||||||||| Sbjct: 236463 gcccgcgaccgcggcggtgatgc 236441
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 71 agatggccaaggcggcgctcta 92 |||||||||||||||||||||| Sbjct: 2172485 agatggccaaggcggcgctcta 2172506
>emb|Z30324.1|SARECAG S.ambofaciens (DSM40697) recA gene Length = 1490 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 245 cggtgcccgcgcccgcgaccgc 266 |||||||||||||||||||||| Sbjct: 1258 cggtgcccgcgcccgcgaccgc 1279
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cgccgcctccggcagaggctcctcc 188 ||||| ||||||||||||||||||| Sbjct: 1761354 cgccggctccggcagaggctcctcc 1761378
>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03, complete sequence Length = 146278 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 gccggtgcccgcgcccgcgaccgcggcgg 271 ||||||||||| ||||||| ||||||||| Sbjct: 58508 gccggtgcccgtgcccgcgcccgcggcgg 58480
>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0109A13, complete sequence Length = 134258 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 gccggtgcccgcgcccgcgaccgcggcgg 271 ||||||||||| ||||||| ||||||||| Sbjct: 133934 gccggtgcccgtgcccgcgcccgcggcgg 133906
>ref|XM_864721.1| PREDICTED: Bos taurus similar to chromobox homolog 4 (LOC613693), partial mRNA Length = 288 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 gcgcccgcgaccgcggcggtg 273 ||||||||||||||||||||| Sbjct: 106 gcgcccgcgaccgcggcggtg 126
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 tgccggtgcccgcgcccgcga 262 ||||||||||||||||||||| Sbjct: 16829 tgccggtgcccgcgcccgcga 16809
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 tgccggtgcccgcgcccgcga 262 ||||||||||||||||||||| Sbjct: 820671 tgccggtgcccgcgcccgcga 820651
>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11 Length = 349697 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 tccactgccggggccgaccga 218 ||||||||||||||||||||| Sbjct: 81123 tccactgccggggccgaccga 81143
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ctgccggggccgaccgagcca 222 ||||||||||||||||||||| Sbjct: 297153 ctgccggggccgaccgagcca 297173
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ctgccggggccgaccgagcca 222 ||||||||||||||||||||| Sbjct: 301806 ctgccggggccgaccgagcca 301826
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ctgccggggccgaccgagcca 222 ||||||||||||||||||||| Sbjct: 262126 ctgccggggccgaccgagcca 262146
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 tgccggtgcccgcgcccgcga 262 ||||||||||||||||||||| Sbjct: 663077 tgccggtgcccgcgcccgcga 663057
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 gccggtgcccgcgcccgcgaccgcggcgg 271 ||||||||||| ||||||| ||||||||| Sbjct: 14907592 gccggtgcccgtgcccgcgcccgcggcgg 14907564
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 gcccgcgcccgcgaccgcggcggtg 273 ||||||||||||| ||||||||||| Sbjct: 20191745 gcccgcgcccgcgcccgcggcggtg 20191769
>dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0472F10 Length = 136076 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 gcccgcgcccgcgaccgcggcggtg 273 ||||||||||||| ||||||||||| Sbjct: 65051 gcccgcgcccgcgcccgcggcggtg 65075
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gccggtgcccgcgcccgcgac 263 ||||||||||||||||||||| Sbjct: 163946 gccggtgcccgcgcccgcgac 163926
>ref|NM_184427.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1023 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 gttcttcatgcacgacatcctcgg 419 |||||||||||| ||||||||||| Sbjct: 342 gttcttcatgcatgacatcctcgg 365
>ref|XM_512220.1| PREDICTED: Pan troglodytes LOC455532 (LOC455532), mRNA Length = 2694 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 861 ggtgccgcgggcgccgcagg 842
>gb|AC093198.3| Drosophila melanogaster clone BACR03G24, complete sequence Length = 182901 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ggccgcgtcctcaacgagcatccc 162 |||||||||||||||| ||||||| Sbjct: 119611 ggccgcgtcctcaacgtgcatccc 119634
>gb|AC006402.12| Drosophila melanogaster clone BACR08D17, complete sequence Length = 174735 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ggccgcgtcctcaacgagcatccc 162 |||||||||||||||| ||||||| Sbjct: 58321 ggccgcgtcctcaacgtgcatccc 58344
>gb|AC183919.2| Pan troglodytes BAC clone CH251-691O9 from chromosome 7, complete sequence Length = 188947 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tcccaacagagtcctccgtg 61 |||||||||||||||||||| Sbjct: 152793 tcccaacagagtcctccgtg 152812
>ref|XM_329540.1| Neurospora crassa OR74A hypothetical protein (NCU08496.1) partial mRNA Length = 3873 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ccgcgcccgcgaccgcggcggtga 274 ||||||||||| |||||||||||| Sbjct: 102 ccgcgcccgcgcccgcggcggtga 125
>ref|XM_958332.1| Neurospora crassa OR74A hypothetical protein (NCU08496.1) partial mRNA Length = 3873 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ccgcgcccgcgaccgcggcggtga 274 ||||||||||| |||||||||||| Sbjct: 102 ccgcgcccgcgcccgcggcggtga 125
>gb|AY436785.1| Homo sapiens plasticity related gene 2a mRNA, complete cds; alternatively spliced Length = 2272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 63 ggtgccgcgggcgccgcagg 44
>gb|AC004799.2| Homo sapiens chromosome 19, cosmid R33516, complete sequence Length = 36229 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 2332 ggtgccgcgggcgccgcagg 2351
>gb|AF541282.1| Homo sapiens plasticity related gene 2 mRNA, complete cds; alternatively spliced Length = 2357 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 64 ggtgccgcgggcgccgcagg 45
>gb|AY304517.1| Homo sapiens lipid phosphate phosphatase-related protein type 3 mRNA, complete cds Length = 2357 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 64 ggtgccgcgggcgccgcagg 45
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 ccgcatccggtgccgcgggcgccgcagg 314 |||||||||||||||||| | ||||||| Sbjct: 2698385 ccgcatccggtgccgcggcccccgcagg 2698358
>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7 Length = 95637 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 ccgcgcccgcgaccgcggcggtga 274 ||||||||||| |||||||||||| Sbjct: 11098 ccgcgcccgcgcccgcggcggtga 11121
>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10 Length = 312050 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tgcgcattcgccggccgcgt 146 |||||||||||||||||||| Sbjct: 147263 tgcgcattcgccggccgcgt 147282
>emb|AL356834.1|NCB11B22 Neurospora crassa DNA linkage group II BAC clone B11B22 Length = 73803 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ccgcgcccgcgaccgcggcggtga 274 ||||||||||| |||||||||||| Sbjct: 32942 ccgcgcccgcgcccgcggcggtga 32919
>emb|AL136596.1|HSM801570 Homo sapiens mRNA; cDNA DKFZp761F069 (from clone DKFZp761F069) Length = 2357 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 64 ggtgccgcgggcgccgcagg 45
>ref|NM_024888.1| Homo sapiens plasticity-related gene 2 (PRG2), mRNA Length = 2357 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 64 ggtgccgcgggcgccgcagg 45
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 gttcttcatgcacgacatcctcgg 419 |||||||||||| ||||||||||| Sbjct: 2965665 gttcttcatgcatgacatcctcgg 2965688
>gb|AF357888.1| Homo sapiens PAP-2-like protein 2 (PHP2) mRNA, complete cds Length = 2703 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggtgccgcgggcgccgcagg 314 |||||||||||||||||||| Sbjct: 408 ggtgccgcgggcgccgcagg 389
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 catccgcatccggtgccgcg 303 |||||||||||||||||||| Sbjct: 5112931 catccgcatccggtgccgcg 5112950
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 cgccggcgacagcccgctga 394 |||||||||||||||||||| Sbjct: 248426 cgccggcgacagcccgctga 248445
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 gttcttcatgcacgacatcctcgg 419 |||||||||||| ||||||||||| Sbjct: 47182 gttcttcatgcatgacatcctcgg 47205
>gb|AF077869.2|AF077869 Streptomyces argillaceus glycosyltransferase (mtmGIV), glycosyltransferase (mtmGIII), c-methyltransferase (mtmMII), o-methyltransferase (mtmMI), glycosyltransferase (mtmGII), glycosyltransferase (mtmGI), and oxygenase (mtmOIV) genes, complete cds; and MtrX (mtrX) gene, partial cds Length = 9316 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 cgcccgcgaccgcggcggtgatgc 277 ||||||||||||||||||| |||| Sbjct: 1014 cgcccgcgaccgcggcggtcatgc 991
>gb|AE003666.6| Drosophila melanogaster chromosome 2L, section 75 of 83 of the complete sequence Length = 318277 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ggccgcgtcctcaacgagcatccc 162 |||||||||||||||| ||||||| Sbjct: 265338 ggccgcgtcctcaacgtgcatccc 265361
>emb|CR626857.1| Rice Cluster I (RC-I), uncultured archeon clone 3D10 complete sequence Length = 36858 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cggtgatgcctttgccatcc 288 |||||||||||||||||||| Sbjct: 26770 cggtgatgcctttgccatcc 26751
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atccggtgccgcgggcgccg 310 |||||||||||||||||||| Sbjct: 789828 atccggtgccgcgggcgccg 789809
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cggtgccgcgggcgccgcag 313 |||||||||||||||||||| Sbjct: 2960715 cggtgccgcgggcgccgcag 2960696 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,519,493 Number of Sequences: 3902068 Number of extensions: 2519493 Number of successful extensions: 50656 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48405 Number of HSP's gapped (non-prelim): 2251 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)