ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2215 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Minus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 297 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 238 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 237 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 178 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 177 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 118 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 117 ccaagcggggcccgcggactcc 96 Score = 111 bits (56), Expect = 2e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 95 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 36 Query: 440 gaaagcaaggcggtgatgatggagtgggagcg 471 || |||||||| |||||||||||||||||||| Sbjct: 35 gatagcaaggccgtgatgatggagtgggagcg 4 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 10 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 69 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 453 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 394 Query: 70 ggcggaggccggt 82 ||||||| ||||| Sbjct: 393 ggcggagtccggt 381
>ref|XM_469859.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1008 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Plus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 156 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 215 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 216 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 275 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 276 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 335 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 336 ccaagcggggcccgcggactcc 357 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 358 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 417 Query: 440 gaaagcaaggcggtgatgatggagtgggagcgtccgct 477 || |||||||| |||||||||||||||||||| ||||| Sbjct: 418 gatagcaaggccgtgatgatggagtgggagcggccgct 455 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 11 atggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggcg 70 ||||||||| || |||| |||||| | | ||||| || ||||||||||| ||||||||| Sbjct: 1 atggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggcg 60 Query: 71 gcggaggccggt 82 |||||| ||||| Sbjct: 61 gcggagtccggt 72
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Minus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 31175953 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 31175894 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 31175893 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 31175834 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 31175833 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 31175774 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 31175773 ccaagcggggcccgcggactcc 31175752 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Minus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 31175751 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 31175692 Query: 440 gaaagcaaggcggtgatgatggagtgggagcgtccgct 477 || |||||||| |||||||||||||||||||| ||||| Sbjct: 31175691 gatagcaaggccgtgatgatggagtgggagcggccgct 31175654 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 10 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 69 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 31176109 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 31176050 Query: 70 ggcggaggccggt 82 ||||||| ||||| Sbjct: 31176049 ggcggagtccggt 31176037 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ggcggcgccgccggacagcaa 33 ||||||||||||||||||||| Sbjct: 22486970 ggcggcgccgccggacagcaa 22486950
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Minus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 96594 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 96535 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 96534 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 96475 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 96474 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 96415 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 96414 ccaagcggggcccgcggactcc 96393 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Minus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 96392 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 96333 Query: 440 gaaagcaaggcggtgatgatggagtgggagcgtccgct 477 || |||||||| |||||||||||||||||||| ||||| Sbjct: 96332 gatagcaaggccgtgatgatggagtgggagcggccgct 96295 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 10 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 69 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 96750 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 96691 Query: 70 ggcggaggccggt 82 ||||||| ||||| Sbjct: 96690 ggcggagtccggt 96678
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Minus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 31266476 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 31266417 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 31266416 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 31266357 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 31266356 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 31266297 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 31266296 ccaagcggggcccgcggactcc 31266275 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Minus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 31266274 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 31266215 Query: 440 gaaagcaaggcggtgatgatggagtgggagcgtccgct 477 || |||||||| |||||||||||||||||||| ||||| Sbjct: 31266214 gatagcaaggccgtgatgatggagtgggagcggccgct 31266177 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 10 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 69 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 31266632 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 31266573 Query: 70 ggcggaggccggt 82 ||||||| ||||| Sbjct: 31266572 ggcggagtccggt 31266560 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ggcggcgccgccggacagcaa 33 ||||||||||||||||||||| Sbjct: 22479999 ggcggcgccgccggacagcaa 22479979
>dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C14, full insert sequence Length = 1492 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Plus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 188 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 247 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 248 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 307 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 308 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 367 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 368 ccaagcggggcccgcggactcc 389 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 390 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 449 Query: 440 gaaagcaaggcggtgatgatggagtgggagcgtccgct 477 || |||||||| |||||||||||||||||||| ||||| Sbjct: 450 gatagcaaggccgtgatgatggagtgggagcggccgct 487 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 10 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 69 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 32 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 91 Query: 70 ggcggaggccggt 82 ||||||| ||||| Sbjct: 92 ggcggagtccggt 104
>dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E04, full insert sequence Length = 1473 Score = 131 bits (66), Expect = 2e-27 Identities = 168/202 (83%) Strand = Plus / Plus Query: 166 cgcggccaccggtggccacgtcgctgccgcgcgactcctgctcgatgccggcgcgccctg 225 |||||||||||||||||||| ||| | || || || || ||||| ||||||||||| || Sbjct: 177 cgcggccaccggtggccacgccgccgtcgtgcagcttctcctcgacgccggcgcgccatg 236 Query: 226 gaacgcgctctctcccgaaggtctctctgcgggtgaccttacctccgaccccgccgcata 285 |||||||||||| ||| || |||| ||||| ||||| ||||||| ||||| | | Sbjct: 237 gaacgcgctctcccccacggggatctccgcgggagacctcgcctccgattccgccacctt 296 Query: 286 cgacctgctcctcgaccacgccctgcgctccgagctcatcctcggcaccgtcgcccgccg 345 |||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct: 297 cgacctcctcctcgaccacgccctccgctccgagctcgtcctcggcaccgtcgctcgccg 356 Query: 346 gcaggcggcccccgcgaactcc 367 || |||| |||||| ||||| Sbjct: 357 ccaagcggggcccgcggactcc 378 Score = 115 bits (58), Expect = 1e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 380 cccgccgagacctacctcgactcgagggtttcgttcagcgaggaccgggtgatggatgcg 439 |||||||||| ||||||||| || |||||||| ||||||||||| |||||||||| ||| Sbjct: 379 cccgccgagagctacctcgaatccagggtttcattcagcgaggagagggtgatggacgcg 438 Query: 440 gaaagcaaggcggtgatgatggagtgggagcgtccgct 477 || |||||||| |||||||||||||||||||| ||||| Sbjct: 439 gatagcaaggccgtgatgatggagtgggagcggccgct 476 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 10 aatggcggcgccgccggacagcaagtctgataaatccccagaggagctcctgtgcgcggc 69 |||||||||| || |||| |||||| | | ||||| || ||||||||||| |||||||| Sbjct: 22 aatggcggcggcggcggagagcaaggcggggaaatcgccggaggagctcctctgcgcggc 81 Query: 70 ggcggaggccggt 82 ||||||| ||||| Sbjct: 82 ggcggagtccggt 94
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 15 cggcgccgccggacagcaagtc 36 |||||||||||||||||||||| Sbjct: 88810 cggcgccgccggacagcaagtc 88789
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ggcggcgccgccggacagcaa 33 ||||||||||||||||||||| Sbjct: 82217 ggcggcgccgccggacagcaa 82197
>gb|AY659219.1| Synthetic construct Peudomonas aeruginosa clone FLH036667.01F PA2514 gene, partial cds Length = 1023 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 285 acgacctgctcctcgaccacgccctgcgc 313 ||||||||||||||||| |||||||||| Sbjct: 65 acgacctgctcctcgacgccgccctgcgc 93
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ctgctcgatgccggcgcgccc 223 ||||||||||||||||||||| Sbjct: 921882 ctgctcgatgccggcgcgccc 921902
>gb|AY026914.1| Pseudomonas putida strain P111 czrBA operon, partial sequence; ben operon and ant operon, complete sequence; and catRBCA operon, partial sequence; and unknown gene Length = 15769 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 285 acgacctgctcctcgaccacgccctgcgc 313 ||||||||||||||||| |||||||||| Sbjct: 9791 acgacctgctcctcgacgccgccctgcgc 9763
>gb|AE004678.1| Pseudomonas aeruginosa PAO1, section 239 of 529 of the complete genome Length = 11593 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 285 acgacctgctcctcgaccacgccctgcgc 313 ||||||||||||||||| |||||||||| Sbjct: 6856 acgacctgctcctcgacgccgccctgcgc 6884
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gtcgcccgccggcaggcggcc 355 ||||||||||||||||||||| Sbjct: 1974285 gtcgcccgccggcaggcggcc 1974305
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ccaccggtggccacgtcgct 190 |||||||||||||||||||| Sbjct: 623709 ccaccggtggccacgtcgct 623690
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ctggcgctgacgccacctac 133 |||||||||||||||||||| Sbjct: 2100819 ctggcgctgacgccacctac 2100838
>gb|AY687443.1| Uncultured bacterium clone HZ21 genomic sequence Length = 6412 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 tgccgcgcgactcctgctcgatgc 213 |||||||||||| ||||||||||| Sbjct: 5135 tgccgcgcgactgctgctcgatgc 5112
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggcaatggcggcgccgccgg 26 |||||||||||||||||||| Sbjct: 2085376 ggcaatggcggcgccgccgg 2085357
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cgacctgctcctcgaccacg 305 |||||||||||||||||||| Sbjct: 3427022 cgacctgctcctcgaccacg 3427041
>gb|AY435218.1| Sus scrofa interferon consensus sequence binding protein 1 (ICSBP1) mRNA, partial cds Length = 242 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 ccctgcgctccgagctcatcctcg 329 ||||||||||| |||||||||||| Sbjct: 148 ccctgcgctccaagctcatcctcg 125
>ref|XM_545528.2| PREDICTED: Canis familiaris similar to trans-acting transcription factor 9 (LOC488406), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgcggccaccggtggccacg 185 |||||||||||||||||||| Sbjct: 1363 cgcggccaccggtggccacg 1344
>ref|XM_838158.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1075) partial mRNA Length = 9639 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ccaccggtggccacgtcgct 190 |||||||||||||||||||| Sbjct: 971 ccaccggtggccacgtcgct 952
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ggcggcgccgccggacagca 32 |||||||||||||||||||| Sbjct: 3415790 ggcggcgccgccggacagca 3415809 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 agctcatcctcggcaccgtc 337 |||||||||||||||||||| Sbjct: 2489024 agctcatcctcggcaccgtc 2489043
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggcaatggcggcgccgccgg 26 |||||||||||||||||||| Sbjct: 9447 ggcaatggcggcgccgccgg 9428
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tggccacgtcgctgccgcgc 197 |||||||||||||||||||| Sbjct: 153495 tggccacgtcgctgccgcgc 153476
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggcaatggcggcgccgccgg 26 |||||||||||||||||||| Sbjct: 164502 ggcaatggcggcgccgccgg 164483
>gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence Length = 135273 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 cgcccgccggcaggcggcccccgc 360 ||||||||| |||||||||||||| Sbjct: 74368 cgcccgccgccaggcggcccccgc 74391
>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete sequence Length = 240564 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 cgcccgccggcaggcggcccccgc 360 ||||||||| |||||||||||||| Sbjct: 75329 cgcccgccgccaggcggcccccgc 75352
>gb|AC022919.8| Homo sapiens chromosome 18, clone RP11-46D1, complete sequence Length = 159749 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 cccgccggcaggcggccccc 358 |||||||||||||||||||| Sbjct: 68222 cccgccggcaggcggccccc 68241
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 cgtcgcccgccggcaggcggcccc 357 ||||||| |||||||||||||||| Sbjct: 3726837 cgtcgccggccggcaggcggcccc 3726860
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ctctctcccgaaggtctctc 252 |||||||||||||||||||| Sbjct: 2888546 ctctctcccgaaggtctctc 2888527
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggcgcgcggccaccggtggc 181 |||||||||||||||||||| Sbjct: 12042508 ggcgcgcggccaccggtggc 12042489
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gcgcgcggccaccggtggcc 182 |||||||||||||||||||| Sbjct: 8026121 gcgcgcggccaccggtggcc 8026102
>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence Length = 224670 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cccgccggcaggcggccccc 358 |||||||||||||||||||| Sbjct: 3682 cccgccggcaggcggccccc 3663
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgtcgcccgccggcaggcg 352 |||||||||||||||||||| Sbjct: 2086385 ccgtcgcccgccggcaggcg 2086366
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gcgcgcggccaccggtggcc 182 |||||||||||||||||||| Sbjct: 14314 gcgcgcggccaccggtggcc 14295
>dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0024C06 Length = 177529 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggcgcgcggccaccggtggc 181 |||||||||||||||||||| Sbjct: 94003 ggcgcgcggccaccggtggc 93984
>dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0024C16 Length = 137779 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggcgcgcggccaccggtggc 181 |||||||||||||||||||| Sbjct: 39642 ggcgcgcggccaccggtggc 39623
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gcgcgcggccaccggtggcc 182 |||||||||||||||||||| Sbjct: 149536 gcgcgcggccaccggtggcc 149517
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tggcggcgccgccggacagc 31 |||||||||||||||||||| Sbjct: 101987 tggcggcgccgccggacagc 101968
>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete sequence Length = 209348 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 cgcccgccggcaggcggcccccgc 360 ||||||||| |||||||||||||| Sbjct: 6668 cgcccgccgccaggcggcccccgc 6645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,678,265 Number of Sequences: 3902068 Number of extensions: 2678265 Number of successful extensions: 63804 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62045 Number of HSP's gapped (non-prelim): 1745 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
