>DIOXL_ARATH (Q949R4) 4,5-DOPA dioxygenase extradiol-like protein|
          Length = 269

 Score =  174 bits (441), Expect = 1e-43
 Identities = 86/138 (62%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
 Frame = +2

Query: 68  TFYISHGSPTLSIDDSLPARHFLKSWEPAGLAGPQPPRAILIVSGHWETDTPAVNVIKGT 247
           TF++SHGSPTLSIDDSL AR F KSW    L  PQ P++IL++S HW+T  P+VN +   
Sbjct: 7   TFFLSHGSPTLSIDDSLEARQFFKSWTQKVL--PQKPKSILVISAHWDTKFPSVNTVL-R 63

Query: 248 NDTIYDFYGFPEQMYKLVYPAPGAPDVAMRTKKLL-EDGGFGPVSEDDGRGLDHGAWVPL 424
           N+TI+DF GFP+ MYKL Y APGA ++  R K+LL ++GG   V ED  RGLDHGAWVPL
Sbjct: 64  NNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPL 123

Query: 425 MLMYPEANIPVCQLSVQT 478
           MLMYPEA+IP+CQLSVQ+
Sbjct: 124 MLMYPEADIPICQLSVQS 141

>DODA_PORGR (Q7XA48) 4,5-DOPA dioxygenase extradiol (EC 1.13.-.-)|
          Length = 271

 Score =  138 bits (347), Expect = 8e-33
 Identities = 67/137 (48%), Positives = 91/137 (66%)
 Frame = +2

Query: 65  DTFYISHGSPTLSIDDSLPARHFLKSWEPAGLAGPQPPRAILIVSGHWETDTPAVNVIKG 244
           ++F++SHG+P +  D+S  AR+FL  W+      P  P++IL+VS HWETD P V+  + 
Sbjct: 11  ESFFLSHGNPAMLADESFIARNFLLGWKKNVF--PVKPKSILVVSAHWETDVPCVSAGQY 68

Query: 245 TNDTIYDFYGFPEQMYKLVYPAPGAPDVAMRTKKLLEDGGFGPVSEDDGRGLDHGAWVPL 424
            N  IYDF   P  M+++ YPAPG P +A R ++LL  GGF     D+ RG DH +WVPL
Sbjct: 69  PN-VIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDHSSWVPL 127

Query: 425 MLMYPEANIPVCQLSVQ 475
            +M PEA+IPVCQLSVQ
Sbjct: 128 SMMCPEADIPVCQLSVQ 144

>YGID_ECOLI (P24197) Hypothetical protein ygiD|
          Length = 271

 Score =  104 bits (260), Expect = 1e-22
 Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
 Frame = +2

Query: 26  PSIRCFLSLTMGMDTFYISHGSPTLSIDDSLPARHFLKSWEPAGLAGPQPPRAILIVSGH 205
           P ++  +  +  M   ++ HGSP   ++D+L    + +SW+  G+  P+P +AI++VS H
Sbjct: 3   PLVKDIIMSSTRMPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRP-QAIVVVSAH 57

Query: 206 WETDTPAVNVIKGTNDTIYDFYGFPEQMYKLVYPAPGAPDVAMRTKKLLEDGGFGPVSED 385
           W T    V  ++ T  TI+DF GFP+ +Y   YPAPG+P +A R  +LL      PV+ D
Sbjct: 58  WFTRGTGVTAME-TPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAP---IPVTLD 113

Query: 386 -DGRGLDHGAWVPLMLMYPEANIPVCQLSVQT 478
            +  G DHG+W  L+ MYP+A+IP+ QLS+ +
Sbjct: 114 KEAWGFDHGSWGVLIKMYPDADIPMVQLSIDS 145

>TOPRS_DROME (Q9V8P9) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (dTopors)
          Length = 1038

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 423 SGTHAPWSSPR--PSSSLTGPNPPSSRSFLVLMATSGA 316
           +G    WS PR  PS+S+   NP ++ SF V MA+ G+
Sbjct: 413 AGFSPDWSPPRVRPSTSVIVTNPGATHSFSVTMASDGS 450

>Y1235_METTH (O27303) Hypothetical protein MTH1235|
          Length = 218

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
 Frame = -1

Query: 286 LLGEAVEVVDGVIGAFDDIDGRGVR--------LPVPGHDQDGARRLRSGETGRLPRLEE 131
           ++G   +V    +GA  + D   +R        +P+ G +++ A  +R+   GRLPR+  
Sbjct: 88  IIGGGAQVSQVAMGAISEADRHNIRGERISIDTIPLVG-EEELAEAVRA--VGRLPRVAA 144

Query: 130 VARRQRVVDGERGRAVGDVERVH 62
           +     ++ GE  RAV  V+R H
Sbjct: 145 LVLAGSLMGGEITRAVEMVKREH 167

>CLPB_STRAL (Q9Z6E4) Chaperone clpB|
          Length = 857

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 181 ARRLRSGETGRLPRLEEVARRQRVVDGERGRAVGDVERVHAHRQGKETPDGWMLLV 14
           A RL  GET +L R+E    R+ +   E  +AV D  R  A     + P G  L +
Sbjct: 549 AGRLLEGETQKLLRMEAELGRRLIGQSEAVQAVSDAVRTRAGIADPDRPTGSFLFL 604

>UVRC_DECAR (Q47EE8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 603

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 296 LVYPAPGAPDVAMRTKKLLEDGGFGPVSEDDGRGLDHGAWVPLML 430
           L YP P + D A  T+  L +    PV   +GRG  H AWV + +
Sbjct: 312 LSYPLP-SEDEAGETEVALAELAGRPVPVQEGRGATHKAWVEMAI 355

>PDLI2_HUMAN (Q96JY6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)|
           (PDZ-LIM protein)
          Length = 352

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = -2

Query: 411 APWSSPRPSSSLTGPNPPSSRSFLVLMATSGAPGAGYTSLYICSGKP 271
           +P+S P  SSSLTG     SRSF  L  + G P A   S    SG+P
Sbjct: 134 SPFSPPPSSSSLTG-EAAISRSFQSLACSPGLPAADRLSY---SGRP 176

>YMU5_STRCM (Q05071) Hypothetical 25.0 kDa protein in mutA 5'region (ORF-D)|
          Length = 237

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 167 PQPPRAILIVSGHWETDTPAVNVIKGTNDTIYDFYGFPE 283
           P+PPR +  V     TD PA+  +   +  IYD +G PE
Sbjct: 113 PRPPRGVT-VRRLTPTDAPALAALSADSSWIYDSWGGPE 150

>FMO4_RAT (Q8K4B7) Dimethylaniline monooxygenase [N-oxide-forming] 4 (EC|
           1.14.13.8) (Hepatic flavin-containing monooxygenase 4)
           (FMO 4) (Dimethylaniline oxidase 4)
          Length = 559

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = +2

Query: 173 PPRAILIVSGHWETDTPAVNVIKGTNDTIYDFYGFPEQMYKLVYPAPGAPDVAMRTKKLL 352
           PP   L+     + +     VIK T+    DF  + +++ + +   P  P + ++  +L 
Sbjct: 397 PPSQKLMAEAIKKEELIKRGVIKDTSQDKLDFISYMDELTQCIGAKPNIPLLFLKDPRLA 456

Query: 353 EDGGFGPVSEDDGRGLDHGAW 415
            +  FGP +    R +  G W
Sbjct: 457 WEVFFGPCTPYQYRLMGPGRW 477

>ADCY6_RAT (Q03343) Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase|
           type VI) (ATP pyrophosphate-lyase 6) (Ca(2+)-inhibitable
           adenylyl cyclase) (ACVI)
          Length = 1166

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 224 PGCPSPSARTRSGWREAAAVRR 159
           P  P+P+ARTR  W++ A +RR
Sbjct: 51  PPSPTPAARTRCPWQDEAFIRR 72

>DNAJ_DEIPR (O34136) Chaperone protein dnaJ|
          Length = 307

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = -1

Query: 283 LGEAVEVVDGVIGAFDDIDGRGVRLPVPGHDQDGARRLRSGETGRLPRLEEVARRQRVVD 104
           L EA E  D +I    ++DGR + L VP   +DGAR   +G+    P   +V    RV++
Sbjct: 161 LSEAFEGSDEII----NVDGRRLSLRVPAGTRDGARLRLAGQG---PGGGDVLLTIRVLE 213

Query: 103 GERGRAVGD 77
             R    GD
Sbjct: 214 DARFELDGD 222

>ENGA_PSEPK (Q88PJ3) GTP-binding protein engA|
          Length = 487

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 226 GRGVRLPVPGHDQDGARRLRSGETGRLPR-LEEVARRQRVVDGE 98
           G G  +PV G    G   L     G LPR  EE A  Q V +GE
Sbjct: 136 GMGNAIPVAGSQGRGINALMEAVLGHLPRDAEEEALEQDVAEGE 179

>E2F3_MOUSE (O35261) Transcription factor E2F3 (E2F-3)|
          Length = 457

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -2

Query: 474 CTESWHTGMLASGYMSISGTHAPWSSPRPSSSLTGPNPPSSRSFLVLMATSGAPGAG 304
           C  S  +G L +G +  S    P + P  SS  T P  PSSR  + L+    APG G
Sbjct: 66  CATSLQSGALTAGPLLPS---VPGTEPAASSLYTTPQGPSSR--VGLLQQPPAPGRG 117

>SYT_ARCFU (O29703) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 619

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -1

Query: 292 VHLLGEAVEVVDGVIGAFDDIDGRGVRLPVPGHDQDGARRLRSGETGRLPRLEEVARRQ 116
           V ++  +   VD  I   DDI   G+R+ V   ++   +++R  +T  +P +  V  ++
Sbjct: 503 VRVIPVSERFVDAAIKIADDIARNGIRVDVDDRNETLGKKIRDAQTEWIPYIAVVGEKE 561

>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/NT
          Length = 3010

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +2

Query: 152 AGLAGPQPPRA-----ILIVSGHWETDTPAVNVIKGTNDTIYDFYGFPEQMYKLVYPAPG 316
           AGL G   P A     ++  +G W  ++ A+N  +  N             Y+  + + G
Sbjct: 396 AGLVGLLTPGAKQNIQLINTNGSWHINSTALNCNESLNTG-----WLAGLFYQHKFNSSG 450

Query: 317 APDVAMRTKKLLEDG-GFGPVSEDDGRGLD 403
            P+     ++L +   G+GP+S  +G GLD
Sbjct: 451 CPERLASCRRLTDFAQGWGPISYANGSGLD 480

>Y1278_ARCFU (O28990) Hypothetical protein AF1278|
          Length = 407

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -1

Query: 220 GVRLPVPGHDQDGARRLRSGETGRLPRLEEVARRQRVVDGERGRAVGDVER 68
           G  LPV     D    +R G    +P ++EV R  RVV GE+G  V   ER
Sbjct: 110 GEWLPVEDISMDRVIVIRDGRAYCIP-IDEVVRGDRVVVGEKGVRVVPPER 159

>TBX6_HUMAN (O95947) T-box transcription factor TBX6 (T-box protein 6)|
          Length = 436

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +2

Query: 137 KSWEPAGLAGPQPPRAILI------VSGHWETDTPAVNVIKGTNDTI 259
           + WEP+G A P+ P  + I         HW     + + +K TN T+
Sbjct: 156 RRWEPSGKAEPRLPDRVYIHPDSPATGAHWMRQPVSFHRVKLTNSTL 202

>FHOD1_MOUSE (Q6P9Q4) FH1/FH2 domain-containing protein (Formin homolog|
           overexpressed in spleen) (FHOS) (Formin homology 2
           domain-containing protein 1)
          Length = 1196

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 423 SGTHAPWSSPRPSSSLTGPNPPSSRSFL 340
           SGT   W SP P+S+   P  P SR  L
Sbjct: 481 SGTRELWDSPEPASAPRTPQSPVSRILL 508


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,281,843
Number of Sequences: 219361
Number of extensions: 1393229
Number of successful extensions: 6611
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6601
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)