ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart07h07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041E09, full insert sequence Length = 1250 Score = 184 bits (93), Expect = 2e-43 Identities = 231/277 (83%) Strand = Plus / Plus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 331 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 390 Query: 252 acaccatctacgacttctacggcttccccgagcagatgtacaagctggtgtaccctgcgc 311 |||||||| |||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct: 391 acaccatccacgacttctacggcttccccaaggctatgtacaagctgaagtaccctgcgc 450 Query: 312 cgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacggtgggttcgggc 371 ||||||| || || |||| |||| |||||| |||| |||||| | | |||||||||| Sbjct: 451 cgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggc 510 Query: 372 cggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatgctca 431 |||||| || || || |||||||||| |||||||| ||||||||||| |||||||||| Sbjct: 511 cggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgctca 570 Query: 432 tgtacccggaggccaacatcccggtgtgccagctctc 468 ||||||||||||| ||| | ||||||||||||||||| Sbjct: 571 tgtacccggaggcgaacgtgccggtgtgccagctctc 607 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 200 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 251
>dbj|AK104545.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C02, full insert sequence Length = 1204 Score = 182 bits (92), Expect = 7e-43 Identities = 340/423 (80%), Gaps = 6/423 (1%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 160 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 219 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 220 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 279 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 280 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 339 Query: 241 aggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaa 294 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | | Sbjct: 340 cggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttcca 399 Query: 295 gctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctgga 354 ||||| ||||| ||||||||||| || || ||||| | || |||| ||||| |||| Sbjct: 400 gctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttgga 459 Query: 355 ggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtg 414 | | | || || |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct: 460 gcaagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtg 519 Query: 415 ggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgca 474 |||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct: 520 ggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgca 579 Query: 475 gac 477 ||| Sbjct: 580 gac 582
>dbj|AK104652.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C01, full insert sequence Length = 1213 Score = 182 bits (92), Expect = 7e-43 Identities = 340/423 (80%), Gaps = 6/423 (1%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 161 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 220 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 221 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 280 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 281 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 340 Query: 241 aggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaa 294 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | | Sbjct: 341 cggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttcca 400 Query: 295 gctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctgga 354 ||||| ||||| ||||||||||| || || ||||| | || |||| ||||| |||| Sbjct: 401 gctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttgga 460 Query: 355 ggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtg 414 | | | || || |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct: 461 gcaagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtg 520 Query: 415 ggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgca 474 |||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct: 521 ggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgca 580 Query: 475 gac 477 ||| Sbjct: 581 gac 583
>dbj|AK104601.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G05, full insert sequence Length = 1205 Score = 182 bits (92), Expect = 7e-43 Identities = 340/423 (80%), Gaps = 6/423 (1%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 161 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 220 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 221 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 280 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 281 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 340 Query: 241 aggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaa 294 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | | Sbjct: 341 cggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttcca 400 Query: 295 gctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctgga 354 ||||| ||||| ||||||||||| || || ||||| | || |||| ||||| |||| Sbjct: 401 gctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttgga 460 Query: 355 ggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtg 414 | | | || || |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct: 461 gcaagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtg 520 Query: 415 ggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgca 474 |||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct: 521 ggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgca 580 Query: 475 gac 477 ||| Sbjct: 581 gac 583
>dbj|AK104462.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C01, full insert sequence Length = 1204 Score = 182 bits (92), Expect = 7e-43 Identities = 340/423 (80%), Gaps = 6/423 (1%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 160 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 219 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 220 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 279 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 280 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 339 Query: 241 aggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaa 294 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | | Sbjct: 340 cggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttcca 399 Query: 295 gctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctgga 354 ||||| ||||| ||||||||||| || || ||||| | || |||| ||||| |||| Sbjct: 400 gctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttgga 459 Query: 355 ggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtg 414 | | | || || |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct: 460 gcaagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtg 519 Query: 415 ggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgca 474 |||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct: 520 ggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgca 579 Query: 475 gac 477 ||| Sbjct: 580 gac 582
>dbj|AK104432.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A08, full insert sequence Length = 1204 Score = 182 bits (92), Expect = 7e-43 Identities = 340/423 (80%), Gaps = 6/423 (1%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 160 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 219 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 220 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 279 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 280 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 339 Query: 241 aggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaa 294 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | | Sbjct: 340 cggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttcca 399 Query: 295 gctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctgga 354 ||||| ||||| ||||||||||| || || ||||| | || |||| ||||| |||| Sbjct: 400 gctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttgga 459 Query: 355 ggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtg 414 | | | || || |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct: 460 gcaagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtg 519 Query: 415 ggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgca 474 |||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct: 520 ggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgca 579 Query: 475 gac 477 ||| Sbjct: 580 gac 582
>dbj|AK060927.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A03, full insert sequence Length = 1212 Score = 182 bits (92), Expect = 7e-43 Identities = 340/423 (80%), Gaps = 6/423 (1%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 160 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 219 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 220 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 279 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 280 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 339 Query: 241 aggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaa 294 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | | Sbjct: 340 cggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttcca 399 Query: 295 gctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctgga 354 ||||| ||||| ||||||||||| || || ||||| | || |||| ||||| |||| Sbjct: 400 gctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttgga 459 Query: 355 ggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtg 414 | | | || || |||||||||| |||||| ||||||||||||| |||||||||||||| Sbjct: 460 gcaagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtg 519 Query: 415 ggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgca 474 |||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| |||| Sbjct: 520 ggtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgca 579 Query: 475 gac 477 ||| Sbjct: 580 gac 582
>ref|NM_190142.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 843 Score = 180 bits (91), Expect = 3e-42 Identities = 339/422 (80%), Gaps = 6/422 (1%) Strand = Plus / Plus Query: 62 atggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgccg 121 |||||||| |||| | | || |||||| ||||||||||||||||||||||| || ||||| Sbjct: 1 atggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgccg 60 Query: 122 gcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcgc 181 |||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 61 gcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcgt 120 Query: 182 gccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaa 241 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 121 gccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccgc 180 Query: 242 ggcaccaatgacaccatctacgactt------ctacggcttccccgagcagatgtacaag 295 |||| ||||||||||||| ||||||| ||| ||||||||| || |||| | || Sbjct: 181 ggcaacaatgacaccatccacgacttcgagggctatggcttccccaagtccatgttccag 240 Query: 296 ctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctggag 355 |||| ||||| ||||||||||| || || ||||| | || |||| ||||| ||||| Sbjct: 241 ctggaatacccggcgccgggcgcccctgatgtggcgaagaaggccaaagagctcttggag 300 Query: 356 gacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgg 415 | | || || |||||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 301 caagccggatttgggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtgg 360 Query: 416 gtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcggtgcag 475 ||||| |||||| |||||||||||||||| ||| | ||||||||||||||||| ||||| Sbjct: 361 gtgccactgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgcag 420 Query: 476 ac 477 || Sbjct: 421 ac 422
>ref|NM_190141.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 801 Score = 176 bits (89), Expect = 4e-41 Identities = 230/277 (83%) Strand = Plus / Plus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 131 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 190 Query: 252 acaccatctacgacttctacggcttccccgagcagatgtacaagctggtgtaccctgcgc 311 |||||||| |||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct: 191 acaccatccacgacttctacggcttccccaaggctatgtacaagctgaagtaccctgcgc 250 Query: 312 cgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacggtgggttcgggc 371 ||||||| || || |||| |||| |||||| |||| |||||| | | |||||||||| Sbjct: 251 cgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggc 310 Query: 372 cggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatgctca 431 |||||| || || || |||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 311 cggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgttca 370 Query: 432 tgtacccggaggccaacatcccggtgtgccagctctc 468 ||||||||||||| ||| | ||||||||||||||||| Sbjct: 371 tgtacccggaggcgaacgtgccggtgtgccagctctc 407 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Plus Query: 62 atggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 |||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 1 atggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 51
>dbj|AK105779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G02, full insert sequence Length = 1190 Score = 176 bits (89), Expect = 4e-41 Identities = 230/277 (83%) Strand = Plus / Plus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 281 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 340 Query: 252 acaccatctacgacttctacggcttccccgagcagatgtacaagctggtgtaccctgcgc 311 |||||||| |||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct: 341 acaccatccacgacttctacggcttccccaaggctatgtacaagctgaagtaccctgcgc 400 Query: 312 cgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacggtgggttcgggc 371 ||||||| || || |||| |||| |||||| |||| |||||| | | |||||||||| Sbjct: 401 cgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggc 460 Query: 372 cggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatgctca 431 |||||| || || || |||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 461 cggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgttca 520 Query: 432 tgtacccggaggccaacatcccggtgtgccagctctc 468 ||||||||||||| ||| | ||||||||||||||||| Sbjct: 521 tgtacccggaggcgaacgtgccggtgtgccagctctc 557 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 150 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 201
>dbj|AK104297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H10, full insert sequence Length = 1030 Score = 176 bits (89), Expect = 4e-41 Identities = 230/277 (83%) Strand = Plus / Plus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 286 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 345 Query: 252 acaccatctacgacttctacggcttccccgagcagatgtacaagctggtgtaccctgcgc 311 |||||||| |||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct: 346 acaccatccacgacttctacggcttccccaaggctatgtacaagctgaagtaccctgcgc 405 Query: 312 cgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacggtgggttcgggc 371 ||||||| || || |||| |||| |||||| |||| |||||| | | |||||||||| Sbjct: 406 cgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggc 465 Query: 372 cggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatgctca 431 |||||| || || || |||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 466 cggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgttca 525 Query: 432 tgtacccggaggccaacatcccggtgtgccagctctc 468 ||||||||||||| ||| | ||||||||||||||||| Sbjct: 526 tgtacccggaggcgaacgtgccggtgtgccagctctc 562 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 155 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 206
>dbj|AK070438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053F07, full insert sequence Length = 1203 Score = 176 bits (89), Expect = 4e-41 Identities = 230/277 (83%) Strand = Plus / Plus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 288 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 347 Query: 252 acaccatctacgacttctacggcttccccgagcagatgtacaagctggtgtaccctgcgc 311 |||||||| |||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct: 348 acaccatccacgacttctacggcttccccaaggctatgtacaagctgaagtaccctgcgc 407 Query: 312 cgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacggtgggttcgggc 371 ||||||| || || |||| |||| |||||| |||| |||||| | | |||||||||| Sbjct: 408 cgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagccgggttcgggc 467 Query: 372 cggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatgctca 431 |||||| || || || |||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 468 cggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgccactgatgttca 527 Query: 432 tgtacccggaggccaacatcccggtgtgccagctctc 468 ||||||||||||| ||| | ||||||||||||||||| Sbjct: 528 tgtacccggaggcgaacgtgccggtgtgccagctctc 564 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Plus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 157 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 208
>gb|BT018584.1| Zea mays clone EL01N0446E12.d mRNA sequence Length = 983 Score = 165 bits (83), Expect = 2e-37 Identities = 251/307 (81%) Strand = Plus / Plus Query: 170 cagccgcctcgcgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtc 229 ||||| || ||||||||||| ||||||| || |||||||| |||| ||| |||| ||| Sbjct: 38 cagcccccgcgcgccatcctcgtcgtgtcgggacactgggacacggccacgccggaggtc 97 Query: 230 aatgtcatcaaaggcaccaatgacaccatctacgacttctacggcttccccgagcagatg 289 || |||||| |||| ||| |||||||| ||||||||||| ||||| ||| ||| ||| Sbjct: 98 aacgtcatccgcggcagcaacgacaccatttacgacttctatggctttcccaagcccatg 157 Query: 290 tacaagctggtgtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctc 349 |||||||| || | || |||||||| || ||| ||||| || | ||||| |||| Sbjct: 158 tacaagctcaagtgcggggctccgggcgccccggacctggccctgcggaccaaagggctc 217 Query: 350 ctggaggacggtgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggc 409 |||||| | | |||||||| || |||| |||||| || |||||||||| ||||||||| Sbjct: 218 ctggagcaagccgggttcggccccgtgaaggaggaccacagccgcgggctggaccacggc 277 Query: 410 gcgtgggtgccgctgatgctcatgtacccggaggccaacatcccggtgtgccagctctcg 469 || ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||| Sbjct: 278 gcctgggtgccgctgatgctcatgtacccggacgccgacatccccgtgtgccagctgtcg 337 Query: 470 gtgcaga 476 ||||||| Sbjct: 338 gtgcaga 344
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 368 gggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatg 427 |||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 38138783 gggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtgggtgccactgatg 38138724 Query: 428 ctcatgtacccggaggccaacatcccggtgtgccagctctcggtgcagac 477 |||||||||||||||| ||| | ||||||||||||||||| ||||||| Sbjct: 38138723 ttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgcagac 38138674 Score = 127 bits (64), Expect = 4e-26 Identities = 142/168 (84%) Strand = Plus / Minus Query: 301 gtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacgg 360 |||||||||||||||||| || || |||| |||| |||||| |||| |||||| | | Sbjct: 38133292 gtaccctgcgccgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagc 38133233 Query: 361 tgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgcc 420 |||||||||||||||| || || || |||||||||| |||||||| ||||||||||| Sbjct: 38133232 cgggttcgggccggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgcc 38133173 Query: 421 gctgatgctcatgtacccggaggccaacatcccggtgtgccagctctc 468 |||||| |||||||||||||||| ||| | ||||||||||||||||| Sbjct: 38133172 actgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctc 38133125 Score = 103 bits (52), Expect = 5e-19 Identities = 169/208 (81%) Strand = Plus / Minus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 38139240 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 38139181 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 38139180 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 38139121 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 38139120 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 38139061 Query: 241 aggcaccaatgacaccatctacgacttc 268 |||| ||||||||||||| |||||||| Sbjct: 38139060 cggcaacaatgacaccatccacgacttc 38139033 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 38135554 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 38135495 Query: 252 acaccatctacgacttctacggcttcccc 280 |||||||| |||||||||||||||||||| Sbjct: 38135494 acaccatccacgacttctacggcttcccc 38135466 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Minus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 38135685 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 38135634 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cgccggaccgcagccgcctc 179 |||||||||||||||||||| Sbjct: 30679293 cgccggaccgcagccgcctc 30679274
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 368 gggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatg 427 |||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 106817 gggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtgggtgccactgatg 106758 Query: 428 ctcatgtacccggaggccaacatcccggtgtgccagctctcggtgcagac 477 |||||||||||||||| ||| | ||||||||||||||||| ||||||| Sbjct: 106757 ttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgcagac 106708 Score = 127 bits (64), Expect = 4e-26 Identities = 142/168 (84%) Strand = Plus / Minus Query: 301 gtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacgg 360 |||||||||||||||||| || || |||| |||| |||||| |||| |||||| | | Sbjct: 101326 gtaccctgcgccgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagc 101267 Query: 361 tgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgcc 420 |||||||||||||||| || || || |||||||||| |||||||| ||||||||||| Sbjct: 101266 cgggttcgggccggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgcc 101207 Query: 421 gctgatgctcatgtacccggaggccaacatcccggtgtgccagctctc 468 |||||| |||||||||||||||| ||| | ||||||||||||||||| Sbjct: 101206 actgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctc 101159 Score = 103 bits (52), Expect = 5e-19 Identities = 169/208 (81%) Strand = Plus / Minus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 107274 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 107215 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 107214 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 107155 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 107154 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 107095 Query: 241 aggcaccaatgacaccatctacgacttc 268 |||| ||||||||||||| |||||||| Sbjct: 107094 cggcaacaatgacaccatccacgacttc 107067 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 103588 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 103529 Query: 252 acaccatctacgacttctacggcttcccc 280 |||||||| |||||||||||||||||||| Sbjct: 103528 acaccatccacgacttctacggcttcccc 103500 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Minus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 103719 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 103668
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 368 gggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgccgctgatg 427 |||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct: 58017 gggccggtgaaggaggaccacggccgcgggcttgaccacggcgcgtgggtgccactgatg 57958 Query: 428 ctcatgtacccggaggccaacatcccggtgtgccagctctcggtgcagac 477 |||||||||||||||| ||| | ||||||||||||||||| ||||||| Sbjct: 57957 ttcatgtacccggaggcgaacgtgccggtgtgccagctctccctgcagac 57908 Score = 127 bits (64), Expect = 4e-26 Identities = 142/168 (84%) Strand = Plus / Minus Query: 301 gtaccctgcgccgggcgcgcccgacgtggccatgagaaccaagaagctcctggaggacgg 360 |||||||||||||||||| || || |||| |||| |||||| |||| |||||| | | Sbjct: 52526 gtaccctgcgccgggcgctcctgatctggcgatgaagaccaaggagcttctggagcaagc 52467 Query: 361 tgggttcgggccggtgagcgaggacgacggccgcgggctcgaccacggcgcgtgggtgcc 420 |||||||||||||||| || || || |||||||||| |||||||| ||||||||||| Sbjct: 52466 cgggttcgggccggtgaaggaaaaccacagccgcgggcttgaccacggtgcgtgggtgcc 52407 Query: 421 gctgatgctcatgtacccggaggccaacatcccggtgtgccagctctc 468 |||||| |||||||||||||||| ||| | ||||||||||||||||| Sbjct: 52406 actgatgttcatgtacccggaggcgaacgtgccggtgtgccagctctc 52359 Score = 103 bits (52), Expect = 5e-19 Identities = 169/208 (81%) Strand = Plus / Minus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgactcgctgcc 120 ||||||||| |||| | | || |||||| ||||||||||||||||||||||| || |||| Sbjct: 58474 catggacaccttcttcctatcgcacggcacgcccacgctctccatcgacgacacgatgcc 58415 Query: 121 ggcgcgccacttcctcaagtcgtgggagccggccggtctcgccggaccgcagccgcctcg 180 ||||| |||||| ||| ||||||| ||||| | | || || ||||||| || || Sbjct: 58414 ggcgcagcacttcttcaggtcgtggctaccggcggcggtggcgggcgcgcagcctccgcg 58355 Query: 181 cgccatcctgatcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaa 240 |||||||| |||||||| || ||||||||||||| ||| ||| ||||||| ||| || Sbjct: 58354 tgccatcctcatcgtgtcgggccactgggagacggccacgccgaccgtcaacgtcgtccg 58295 Query: 241 aggcaccaatgacaccatctacgacttc 268 |||| ||||||||||||| |||||||| Sbjct: 58294 cggcaacaatgacaccatccacgacttc 58267 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 192 tcgtgtccgggcactgggagacggacaccccggccgtcaatgtcatcaaaggcaccaatg 251 ||||||| || ||||||||| ||| | | ||| | ||||| |||||| |||| ||| | Sbjct: 54788 tcgtgtcgggccactgggaggcggccgcgccgacggtcaacgtcatccgcggcaacaacg 54729 Query: 252 acaccatctacgacttctacggcttcccc 280 |||||||| |||||||||||||||||||| Sbjct: 54728 acaccatccacgacttctacggcttcccc 54700 Score = 48.1 bits (24), Expect = 0.026 Identities = 45/52 (86%) Strand = Plus / Minus Query: 61 catggacacgttctacatctcccacggctcgcccacgctctccatcgacgac 112 ||||||||| |||| | | || |||||| |||||||||| |||||||||||| Sbjct: 54919 catggacaccttcttcctgtcgcacggcgcgcccacgctgtccatcgacgac 54868
>emb|AJ580598.1|PGR580598 Portulaca grandiflora dodA gene for 4,5-DOPA dioxygenase extradiol Length = 817 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 431 atgtacccggaggccaacatcccggtgtgccagctctcggtgcag 475 |||| ||||||||| ||||||||||||||||||| ||||||||| Sbjct: 388 atgtgcccggaggcggacatcccggtgtgccagctttcggtgcag 432
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 398 ctcgaccacggcgcgtgggtgccgctgatgctcatgtacccgga 441 |||||||||||||||||||||||| || |||| |||| |||||| Sbjct: 467156 ctcgaccacggcgcgtgggtgccgatgttgctgatgttcccgga 467113 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ccacggcgcgtgggtgccgc 422 |||||||||||||||||||| Sbjct: 258438 ccacggcgcgtgggtgccgc 258457
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 397 gctcgaccacggcgcgtgggtgccgctgatgc 428 ||||||||||||||| |||||||||||||||| Sbjct: 1920920 gctcgaccacggcgcctgggtgccgctgatgc 1920951
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 399 tcgaccacggcgcgtgggtgccgctgatgctcatgtacccggaggccaacatcccggtg 457 |||| ||||||| ||||||||||||| ||| ||||||||| ||||| | ||||||||| Sbjct: 4515269 tcgatcacggcgtgtgggtgccgctgtcgctgatgtacccgcaggccgatatcccggtg 4515327
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 390 gccgcgggctcgaccacggcgcgtgggtgccgctg 424 ||||||| |||||||||||||| |||||||||||| Sbjct: 3000847 gccgcggcctcgaccacggcgcctgggtgccgctg 3000881
>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C) Length = 158230 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 399 tcgaccacggcgcgtgggtgccgctgatgctcatgtacccggaggccaacatcccggtg 457 ||||||||||| | ||||||||||||| || ||||||||| |||| ||||||||||| Sbjct: 7817 tcgaccacggcacctgggtgccgctgagcctgatgtacccgcaggcggacatcccggtg 7759
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 399 tcgaccacggcgcgtgggtgccgctgatgctcatgtacccggaggccaacatcccggt 456 ||||||||||||| |||||||||||| ||| ||||| || ||||| |||||||||| Sbjct: 1650437 tcgaccacggcgcctgggtgccgctgtcgctgatgtatccacaggccgacatcccggt 1650380
>ref|XM_561228.1| Anopheles gambiae str. PEST ENSANGP00000027107 (ENSANGG00000022132), partial mRNA Length = 345 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 260 tacgacttctacggcttccccgagc 284 ||||||||||||||||||||||||| Sbjct: 190 tacgacttctacggcttccccgagc 214
>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074, complete sequence Length = 131741 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 244 caccaatgacaccatctacgacttctacggcttcccc 280 |||||| ||||||||||| |||||||| ||||||||| Sbjct: 14303 caccaacgacaccatctatgacttctatggcttcccc 14339 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 248 aatgacaccatctacgacttctacggcttcccc 280 ||||||||||||||||| ||||| || |||||| Sbjct: 75995 aatgacaccatctacgatttctatggtttcccc 76027
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 399 tcgaccacggcgcgtgggtgccgctgatgctcatgtacccggaggccaacatcccggtg 457 ||||||||||| | ||||| |||||| ||| ||||||||| |||| ||||||||||| Sbjct: 4946764 tcgaccacggcacctgggtaccgctgtcgctgatgtacccgcaggcggacatcccggtg 4946822
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 394 cgggctcgaccacggcgcgtgggtgccgctg 424 ||||||||| |||||||| |||||||||||| Sbjct: 1125965 cgggctcgatcacggcgcctgggtgccgctg 1125935
>gb|AE004710.1| Pseudomonas aeruginosa PAO1, section 271 of 529 of the complete genome Length = 11873 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 399 tcgaccacggcgcgtgggtgccgctgatgctcatgtacccggaggccaacatccc 453 ||||||||||| | ||||||||||||| || ||||||||| |||| ||||||| Sbjct: 9167 tcgaccacggcacctgggtgccgctgagcctgatgtacccgcaggcggacatccc 9221
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 399 tcgaccacggcgcgtgggtgccgctgatgctcatgtacccgga 441 ||||||| ||||| |||||||||||| ||| ||||||||||| Sbjct: 2092890 tcgaccatggcgcctgggtgccgctgtcgctgatgtacccgga 2092848
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 308 gcgccgggcgcgcccgacgtggccat 333 |||||| ||||||||||||||||||| Sbjct: 83483 gcgccgcgcgcgcccgacgtggccat 83508 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcgccgggcgcgcccgacgtggcc 331 |||||||||||||||||| ||||| Sbjct: 252187 gcgccgggcgcgcccgacctggcc 252210
>gb|AC124526.6| Mus musculus BAC clone RP23-406P13 from chromosome 18, complete sequence Length = 203854 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 cagcaccagcagcatccatcca 32 |||||||||||||||||||||| Sbjct: 141009 cagcaccagcagcatccatcca 141030
>gb|AC117816.11| Mus musculus chromosome 19, clone RP24-573C13, complete sequence Length = 168728 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 10 gcagcaccagcagcatccatccatcc 35 |||||| ||||||||||||||||||| Sbjct: 71398 gcagcagcagcagcatccatccatcc 71373
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.41 Identities = 55/66 (83%) Strand = Plus / Minus Query: 391 ccgcgggctcgaccacggcgcgtgggtgccgctgatgctcatgtacccggaggccaacat 450 |||||| |||||||||||||||| || |||||| || |||| |||||| ||| |||| Sbjct: 4574257 ccgcggcctcgaccacggcgcgtacgtcccgctggtggagatgttcccggacgccgacat 4574198 Query: 451 cccggt 456 |||||| Sbjct: 4574197 cccggt 4574192
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 gacgacggccgcgggctcgacc 404 |||||||||||||||||||||| Sbjct: 41963 gacgacggccgcgggctcgacc 41984
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.41 Identities = 37/42 (88%) Strand = Plus / Plus Query: 398 ctcgaccacggcgcgtgggtgccgctgatgctcatgtacccg 439 ||||| |||||||||||||||||| || |||| |||| |||| Sbjct: 3371998 ctcgatcacggcgcgtgggtgccgatgctgctgatgttcccg 3372039
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 tcccacggctcgcccacgctc 100 ||||||||||||||||||||| Sbjct: 1946518 tcccacggctcgcccacgctc 1946498
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 398 ctcgaccacggcgcgtgggtgccgctgatgctcatgt 434 |||||||||||||| ||||| ||| || ||||||||| Sbjct: 4408206 ctcgaccacggcgcatgggtaccgatgctgctcatgt 4408242
>dbj|AB103463.1| Streptomyces sp. AM-7161 medermycin biosynthetic gene cluster (med-ORF1 - 30) and ORF P - Z , partial and complete cds Length = 36202 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 386 gacggccgcgggctcgaccacggcg 410 |||||| |||||||||||||||||| Sbjct: 14775 gacggcggcgggctcgaccacggcg 14751
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 397 gctcgaccacggcgcgtgggtgccgctgatgct 429 ||||||||| ||||||||| | ||||||||||| Sbjct: 16910 gctcgaccatggcgcgtggattccgctgatgct 16942
>ref|XM_464379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1557 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cgacgactcgctgccggcgc 125 |||||||||||||||||||| Sbjct: 963 cgacgactcgctgccggcgc 944
>ref|NM_191565.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 657 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgccggaccgcagccgcctc 179 |||||||||||||||||||| Sbjct: 173 cgccggaccgcagccgcctc 192
>ref|XM_361869.1| Magnaporthe grisea 70-15 hypothetical protein (MG04343.4) partial mRNA Length = 1026 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 catctacgacttctacggcttccc 279 ||||||||||| |||||||||||| Sbjct: 390 catctacgactactacggcttccc 413
>emb|Y13285.1|ZMY13285 Zea Mays mRNA for pectin methylesterase-like protein Length = 1901 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 caagaagctcctggaggacg 359 |||||||||||||||||||| Sbjct: 366 caagaagctcctggaggacg 385
>emb|X79980.1|SGNATHRD S.griseus genes nat, hrdD and ORF1 Length = 2890 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 258 tctacgacttctacggcttccccgagca 285 |||||||||||| |||||||||||||| Sbjct: 335 tctacgacttctggggcttccccgagca 362
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 308 gcgccgggcgcgcccgacgtggcc 331 |||||||||||||||||| ||||| Sbjct: 166119 gcgccgggcgcgcccgacctggcc 166142
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 gcgccgggcgcgcccgacgtggcc 331 |||||||||||||||||| ||||| Sbjct: 213921 gcgccgggcgcgcccgacctggcc 213898
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gccggccggtctcgccggac 167 |||||||||||||||||||| Sbjct: 139499 gccggccggtctcgccggac 139480
>emb|CR857892.1| Pongo pygmaeus mRNA; cDNA DKFZp459P0133 (from clone DKFZp459P0133) Length = 3806 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 gcagcaccagcagcatccat 29 |||||||||||||||||||| Sbjct: 39 gcagcaccagcagcatccat 58
>gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215953 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gcagcatccatccatccggt 38 |||||||||||||||||||| Sbjct: 46901 gcagcatccatccatccggt 46882
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 cgcagcaccagcagcatccatccatccg 36 ||||||| ||||||| |||||||||||| Sbjct: 7939374 cgcagcagcagcagcgtccatccatccg 7939401
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggacgacggccgcgggctcgacca 405 |||||||||||||| ||||||||| Sbjct: 11752030 ggacgacggccgcgagctcgacca 11752053
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cgacgactcgctgccggcgc 125 |||||||||||||||||||| Sbjct: 4827466 cgacgactcgctgccggcgc 4827447
>gb|AC092850.13| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176733 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ccagcagcatccatccatcc 35 |||||||||||||||||||| Sbjct: 149053 ccagcagcatccatccatcc 149072
>dbj|D49704.2| Oryza sativa (japonica cultivar-group) OSH45 gene, complete cds Length = 5034 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggacgacggccgcgggctcgacca 405 |||||||||||||| ||||||||| Sbjct: 953 ggacgacggccgcgagctcgacca 976
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cgccggaccgcagccgcctc 179 |||||||||||||||||||| Sbjct: 121570 cgccggaccgcagccgcctc 121551
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tcgacgactcgctgccggcgcgcc 128 |||||||| ||||||||||||||| Sbjct: 1390885 tcgacgacacgctgccggcgcgcc 1390908
>emb|AJ583016.1| Physcomitrella patens mRNA for 4,5 dioxygenase extradiol (dioxa gene) Length = 991 Score = 40.1 bits (20), Expect = 6.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 395 gggctcgaccacggcgcgtgggtgccgctgatgctcatgtaccc 438 |||||||||||||| || ||| ||| |||||||| |||||||| Sbjct: 386 gggctcgaccacggagcatggacgcccctgatgctaatgtaccc 429
>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0075O18 Length = 125411 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggacgacggccgcgggctcgacca 405 |||||||||||||| ||||||||| Sbjct: 81730 ggacgacggccgcgagctcgacca 81753
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cgacgactcgctgccggcgc 125 |||||||||||||||||||| Sbjct: 108056 cgacgactcgctgccggcgc 108037
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cgacgactcgctgccggcgc 125 |||||||||||||||||||| Sbjct: 69625 cgacgactcgctgccggcgc 69606
>dbj|AP006235.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017N10 Length = 168535 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 cgcagcaccagcagcatccatccatccg 36 ||||||| ||||||| |||||||||||| Sbjct: 52017 cgcagcagcagcagcgtccatccatccg 52044
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggacgacggccgcgggctcgacca 405 |||||||||||||| ||||||||| Sbjct: 30315 ggacgacggccgcgagctcgacca 30338
>dbj|AK111645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132C10, full insert sequence Length = 1125 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ggacgacggccgcgggctcgacca 405 |||||||||||||| ||||||||| Sbjct: 93 ggacgacggccgcgagctcgacca 116
>gb|AY109517.1| Zea mays CL1790_1 mRNA sequence Length = 1903 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 caagaagctcctggaggacg 359 |||||||||||||||||||| Sbjct: 366 caagaagctcctggaggacg 385
>gb|AY108074.1| Zea mays PCO123641 mRNA sequence Length = 968 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gcgaggacgacggccgcggg 397 |||||||||||||||||||| Sbjct: 223 gcgaggacgacggccgcggg 204
>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete sequence Length = 203311 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 accagcagcatccatccatc 34 |||||||||||||||||||| Sbjct: 71183 accagcagcatccatccatc 71164
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.5 Identities = 38/44 (86%) Strand = Plus / Minus Query: 395 gggctcgaccacggcgcgtgggtgccgctgatgctcatgtaccc 438 |||||||| ||||| ||||||||||| |||| ||| || ||||| Sbjct: 191179 gggctcgatcacggggcgtgggtgcccctgaggctgatctaccc 191136 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,308,573 Number of Sequences: 3902068 Number of extensions: 3308573 Number of successful extensions: 73150 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71108 Number of HSP's gapped (non-prelim): 2035 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
