Clone Name | bart07h02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 95.6 bits (48), Expect = 7e-17 Identities = 87/100 (87%) Strand = Plus / Minus Query: 88 cttccttgccgtcccggccgcggccacggggaagacgggccaggtggccgtgttctgggg 147 |||||| |||| ||||||| ||||| ||||||||| ||||||||| |||| |||||||| Sbjct: 14490784 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 14490725 Query: 148 taggaacaagaacgaggggtccctccgcgaggcctgcgac 187 |||||||| ||||||| |||||||||||||||||||| Sbjct: 14490724 ccggaacaaggacgagggcaccctccgcgaggcctgcgac 14490685
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 95.6 bits (48), Expect = 7e-17 Identities = 87/100 (87%) Strand = Plus / Minus Query: 88 cttccttgccgtcccggccgcggccacggggaagacgggccaggtggccgtgttctgggg 147 |||||| |||| ||||||| ||||| ||||||||| ||||||||| |||| |||||||| Sbjct: 83958 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 83899 Query: 148 taggaacaagaacgaggggtccctccgcgaggcctgcgac 187 |||||||| ||||||| |||||||||||||||||||| Sbjct: 83898 ccggaacaaggacgagggcaccctccgcgaggcctgcgac 83859
>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III, complete cds Length = 934 Score = 91.7 bits (46), Expect = 1e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 114 cggggaagacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctcc 173 |||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||| | Sbjct: 109 cggggaagaccggccaggtgacggtgttctggggccggaacaaggccgaggggtccctgc 168 Query: 174 gcgaggcctgcgacactggcacgtacacca 203 |||||||||||||| | |||| |||||||| Sbjct: 169 gcgaggcctgcgactccggcatgtacacca 198 Score = 52.0 bits (26), Expect = 0.001 Identities = 34/37 (91%) Strand = Plus / Plus Query: 246 accacctcgacctgtccggccacgacgtcnccgccgt 282 ||||||||||||| |||||||||||| || ||||||| Sbjct: 244 accacctcgacctctccggccacgacctctccgccgt 280
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 89.7 bits (45), Expect = 4e-15 Identities = 121/147 (82%) Strand = Plus / Plus Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 60783 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 60842 Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255 |||||| | | |||| |||||||||| |||| |||||| |||| | || |||||| Sbjct: 60843 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 60902 Query: 256 cctgtccggccacgacgtcnccgccgt 282 ||| ||||||||||||||| ||||||| Sbjct: 60903 cctctccggccacgacgtctccgccgt 60929 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 84412 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 84353
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 89.7 bits (45), Expect = 4e-15 Identities = 121/147 (82%) Strand = Plus / Plus Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 28101516 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28101575 Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255 |||||| | | |||| |||||||||| |||| |||||| |||| | || |||||| Sbjct: 28101576 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 28101635 Query: 256 cctgtccggccacgacgtcnccgccgt 282 ||| ||||||||||||||| ||||||| Sbjct: 28101636 cctctccggccacgacgtctccgccgt 28101662 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 28125857 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28125798
>dbj|AK073800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067D20, full insert sequence Length = 1106 Score = 89.7 bits (45), Expect = 4e-15 Identities = 121/147 (82%) Strand = Plus / Plus Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 192 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 251 Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255 |||||| | | |||| |||||||||| |||| |||||| |||| | || |||||| Sbjct: 252 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 311 Query: 256 cctgtccggccacgacgtcnccgccgt 282 ||| ||||||||||||||| ||||||| Sbjct: 312 cctctccggccacgacgtctccgccgt 338
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 89.7 bits (45), Expect = 4e-15 Identities = 121/147 (82%) Strand = Plus / Plus Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 28086394 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28086453 Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255 |||||| | | |||| |||||||||| |||| |||||| |||| | || |||||| Sbjct: 28086454 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 28086513 Query: 256 cctgtccggccacgacgtcnccgccgt 282 ||| ||||||||||||||| ||||||| Sbjct: 28086514 cctctccggccacgacgtctccgccgt 28086540 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 28110735 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28110676
>dbj|D55708.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1049 Score = 89.7 bits (45), Expect = 4e-15 Identities = 121/147 (82%) Strand = Plus / Plus Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 134 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 193 Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255 |||||| | | |||| |||||||||| |||| |||||| |||| | || |||||| Sbjct: 194 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 253 Query: 256 cctgtccggccacgacgtcnccgccgt 282 ||| ||||||||||||||| ||||||| Sbjct: 254 cctctccggccacgacgtctccgccgt 280
>ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 73.8 bits (37), Expect = 3e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 121 gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180 |||||| |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| Sbjct: 108 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 167 Query: 181 ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229 |||||||| ||| |||||||| | | |||| ||||||||| ||||| Sbjct: 168 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 216
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 3e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 121 gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180 |||||| |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| Sbjct: 26161669 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 26161728 Query: 181 ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229 |||||||| ||| |||||||| | | |||| ||||||||| ||||| Sbjct: 26161729 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 26161777
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full insert sequence Length = 1165 Score = 73.8 bits (37), Expect = 3e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 121 gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180 |||||| |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| Sbjct: 156 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 215 Query: 181 ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229 |||||||| ||| |||||||| | | |||| ||||||||| ||||| Sbjct: 216 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 264
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 73.8 bits (37), Expect = 3e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 121 gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180 |||||| |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| Sbjct: 53527 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 53586 Query: 181 ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229 |||||||| ||| |||||||| | | |||| ||||||||| ||||| Sbjct: 53587 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 53635
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 60.0 bits (30), Expect = 4e-06 Identities = 95/117 (81%) Strand = Plus / Plus Query: 119 aagacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgag 178 ||||| ||||||||| | ||||||||||| |||||||| |||||| ||||| || ||| Sbjct: 100 aagaccggccaggtgacggtgttctggggacggaacaaggccgagggctccctgcgtgag 159 Query: 179 gcctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtcntcggc 235 ||||||||| | || | |||||||| | | ||| ||||| ||||||||| ||||| Sbjct: 160 gcctgcgactccggtatgtacaccatggtcaccatgtccttgctcgacgtcttcggc 216
>gb|AC104270.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1037_G10, complete sequence Length = 181130 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 137 gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189 ||||||||||| |||||||| |||||| |||||||| |||||||||||||| Sbjct: 59973 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacac 60025 Score = 46.1 bits (23), Expect = 0.060 Identities = 41/47 (87%) Strand = Plus / Plus Query: 141 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 187 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 71134 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 71180 Score = 44.1 bits (22), Expect = 0.24 Identities = 61/74 (82%) Strand = Plus / Plus Query: 150 ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccaaagccc 209 |||||||| ||||||| |||||| | ||||||||||| || ||| ||||||| | | Sbjct: 93527 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 93586 Query: 210 tcatttccttcctc 223 |||||||||||||| Sbjct: 93587 tcatttccttcctc 93600 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 160 cgaggggtccctccgcgaggcctgcgacac 189 ||||||||||||||| ||||| |||||||| Sbjct: 15167 cgaggggtccctccgtgaggcgtgcgacac 15138
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 137 gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189 ||||||||||| |||||||| |||||| |||||||| |||||||||||||| Sbjct: 8848048 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacac 8848100 Score = 46.1 bits (23), Expect = 0.060 Identities = 41/47 (87%) Strand = Plus / Plus Query: 141 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 187 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 8859209 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 8859255 Score = 44.1 bits (22), Expect = 0.24 Identities = 61/74 (82%) Strand = Plus / Plus Query: 150 ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccaaagccc 209 |||||||| ||||||| |||||| | ||||||||||| || ||| ||||||| | | Sbjct: 8881602 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 8881661 Query: 210 tcatttccttcctc 223 |||||||||||||| Sbjct: 8881662 tcatttccttcctc 8881675 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 160 cgaggggtccctccgcgaggcctgcgacac 189 ||||||||||||||| ||||| |||||||| Sbjct: 8803242 cgaggggtccctccgtgaggcgtgcgacac 8803213
>dbj|AK106678.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A12, full insert sequence Length = 938 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 746 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 687
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full insert sequence Length = 1161 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 191 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 250
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.060 Identities = 47/55 (85%) Strand = Plus / Minus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189 |||| |||||||| | |||||||||||||| |||| |||||| |||||||||| Sbjct: 25772019 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 25771965
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 46.1 bits (23), Expect = 0.060 Identities = 47/55 (85%) Strand = Plus / Minus Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189 |||| |||||||| | |||||||||||||| |||| |||||| |||||||||| Sbjct: 44230 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 44176
>dbj|AK073843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H05, full insert sequence Length = 1152 Score = 46.1 bits (23), Expect = 0.060 Identities = 41/47 (87%) Strand = Plus / Plus Query: 141 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 187 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 160 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 206
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 111 ccacggggaagacgggccaggtggcc 136 ||||||||||||||||| |||||||| Sbjct: 746231 ccacggggaagacgggcgaggtggcc 746256
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 160 cgaggggtccctccgcgaggcctgcgacac 189 ||||||||||||||| ||||| |||||||| Sbjct: 135684 cgaggggtccctccgtgaggcgtgcgacac 135655
>dbj|AK065866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045O11, full insert sequence Length = 1198 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 160 cgaggggtccctccgcgaggcctgcgacac 189 ||||||||||||||| ||||| |||||||| Sbjct: 184 cgaggggtccctccgtgaggcgtgcgacac 213
>dbj|AK062114.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C02, full insert sequence Length = 1199 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 160 cgaggggtccctccgcgaggcctgcgacac 189 ||||||||||||||| ||||| |||||||| Sbjct: 183 cgaggggtccctccgtgaggcgtgcgacac 212
>ref|XM_550226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 759 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 133 cctccgcgaggcctgcgaca 152
>ref|XM_549854.1| Oryza sativa (japonica cultivar-group), mRNA Length = 711 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 139 cctccgcgaggcctgcgaca 158
>emb|AJ318884.1|TTU318884 Triticum turgidum subsp. durum xip-II gene for putative xylanase inhibitor protein Length = 2143 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 120 agacgggccaggtggccgtgttctgggg 147 ||||||||||| || ||||||||||||| Sbjct: 1106 agacgggccagctgaccgtgttctgggg 1133
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 24592100 cctccgcgaggcctgcgaca 24592119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 3196087 cctccgcgaggcctgcgaca 3196068 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 403264 cctccgcgaggcctgcgaca 403245
>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1189A09 Length = 167761 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 13716 cctccgcgaggcctgcgaca 13697
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 139875 cctccgcgaggcctgcgaca 139856
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 155102 cctccgcgaggcctgcgaca 155083
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 43465 cctccgcgaggcctgcgaca 43446
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 24520306 cctccgcgaggcctgcgaca 24520325
>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143895 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctccgcgaggcctgcgaca 188 |||||||||||||||||||| Sbjct: 36966 cctccgcgaggcctgcgaca 36985
>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete sequence Length = 184551 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cagcctccttcctactcctc 64 |||||||||||||||||||| Sbjct: 28263 cagcctccttcctactcctc 28244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,521,428 Number of Sequences: 3902068 Number of extensions: 1521428 Number of successful extensions: 27974 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27684 Number of HSP's gapped (non-prelim): 288 length of query: 282 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 260 effective length of database: 17,147,199,772 effective search space: 4458271940720 effective search space used: 4458271940720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)