ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 96 7e-17
2dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 96 7e-17
3dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhi... 92 1e-15
4gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 90 4e-15
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
6dbj|AK073800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 4e-15
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 90 4e-15
8dbj|D55708.1| Oryza sativa (japonica cultivar-group) mRNA for ch... 90 4e-15
9ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
11dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
12dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
13emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 60 4e-06
14gb|AC104270.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
16dbj|AK106678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
17dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
18dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
19dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
20dbj|AK073843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
21gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 44 0.24
22gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.24
23dbj|AK065866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
24dbj|AK062114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
25ref|XM_550226.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
26ref|XM_549854.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
27emb|AJ318884.1|TTU318884 Triticum turgidum subsp. durum xip-II g... 40 3.7
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
30dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
31dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
32dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
33dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
35emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573... 40 3.7
36emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chrom... 40 3.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                            
Query: 88       cttccttgccgtcccggccgcggccacggggaagacgggccaggtggccgtgttctgggg 147
                |||||| |||| ||||||| |||||  ||||||||| ||||||||| |||| ||||||||
Sbjct: 14490784 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 14490725

                                                        
Query: 148      taggaacaagaacgaggggtccctccgcgaggcctgcgac 187
                  |||||||| |||||||  ||||||||||||||||||||
Sbjct: 14490724 ccggaacaaggacgagggcaccctccgcgaggcctgcgac 14490685



to top

>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                         
Query: 88    cttccttgccgtcccggccgcggccacggggaagacgggccaggtggccgtgttctgggg 147
             |||||| |||| ||||||| |||||  ||||||||| ||||||||| |||| ||||||||
Sbjct: 83958 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 83899

                                                     
Query: 148   taggaacaagaacgaggggtccctccgcgaggcctgcgac 187
               |||||||| |||||||  ||||||||||||||||||||
Sbjct: 83898 ccggaacaaggacgagggcaccctccgcgaggcctgcgac 83859



to top

>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III,
           complete cds
          Length = 934

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 79/90 (87%)
 Strand = Plus / Plus

                                                                       
Query: 114 cggggaagacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctcc 173
           |||||||||| ||||||||| | |||||||||||  ||||||||  |||||||||||| |
Sbjct: 109 cggggaagaccggccaggtgacggtgttctggggccggaacaaggccgaggggtccctgc 168

                                         
Query: 174 gcgaggcctgcgacactggcacgtacacca 203
           |||||||||||||| | |||| ||||||||
Sbjct: 169 gcgaggcctgcgactccggcatgtacacca 198



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 246 accacctcgacctgtccggccacgacgtcnccgccgt 282
           ||||||||||||| |||||||||||| || |||||||
Sbjct: 244 accacctcgacctctccggccacgacctctccgccgt 280



to top

>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0022E16 map C481S, complete sequence
          Length = 179668

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 121/147 (82%)
 Strand = Plus / Plus

                                                                         
Query: 136   cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195
             ||||||||||||  |||||||| ||||||| || ||||| |||||||||||||| |||  
Sbjct: 60783 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 60842

                                                                         
Query: 196   gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255
              ||||||   | | |||| |||||||||| |||| |||||| ||||  | ||  ||||||
Sbjct: 60843 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 60902

                                        
Query: 256   cctgtccggccacgacgtcnccgccgt 282
             ||| ||||||||||||||| |||||||
Sbjct: 60903 cctctccggccacgacgtctccgccgt 60929



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 135   ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194
             |||| ||||||||  |||||||| ||||||| || ||||| |||||||||||||| ||||
Sbjct: 84412 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 84353



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 121/147 (82%)
 Strand = Plus / Plus

                                                                            
Query: 136      cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195
                ||||||||||||  |||||||| ||||||| || ||||| |||||||||||||| |||  
Sbjct: 28101516 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28101575

                                                                            
Query: 196      gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255
                 ||||||   | | |||| |||||||||| |||| |||||| ||||  | ||  ||||||
Sbjct: 28101576 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 28101635

                                           
Query: 256      cctgtccggccacgacgtcnccgccgt 282
                ||| ||||||||||||||| |||||||
Sbjct: 28101636 cctctccggccacgacgtctccgccgt 28101662



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                            
Query: 135      ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194
                |||| ||||||||  |||||||| ||||||| || ||||| |||||||||||||| ||||
Sbjct: 28125857 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28125798



to top

>dbj|AK073800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067D20, full
           insert sequence
          Length = 1106

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 121/147 (82%)
 Strand = Plus / Plus

                                                                       
Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195
           ||||||||||||  |||||||| ||||||| || ||||| |||||||||||||| |||  
Sbjct: 192 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 251

                                                                       
Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255
            ||||||   | | |||| |||||||||| |||| |||||| ||||  | ||  ||||||
Sbjct: 252 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 311

                                      
Query: 256 cctgtccggccacgacgtcnccgccgt 282
           ||| ||||||||||||||| |||||||
Sbjct: 312 cctctccggccacgacgtctccgccgt 338



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 121/147 (82%)
 Strand = Plus / Plus

                                                                            
Query: 136      cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195
                ||||||||||||  |||||||| ||||||| || ||||| |||||||||||||| |||  
Sbjct: 28086394 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28086453

                                                                            
Query: 196      gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255
                 ||||||   | | |||| |||||||||| |||| |||||| ||||  | ||  ||||||
Sbjct: 28086454 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 28086513

                                           
Query: 256      cctgtccggccacgacgtcnccgccgt 282
                ||| ||||||||||||||| |||||||
Sbjct: 28086514 cctctccggccacgacgtctccgccgt 28086540



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                            
Query: 135      ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194
                |||| ||||||||  |||||||| ||||||| || ||||| |||||||||||||| ||||
Sbjct: 28110735 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28110676



to top

>dbj|D55708.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
           cds
          Length = 1049

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 121/147 (82%)
 Strand = Plus / Plus

                                                                       
Query: 136 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 195
           ||||||||||||  |||||||| ||||||| || ||||| |||||||||||||| |||  
Sbjct: 134 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 193

                                                                       
Query: 196 gtacaccaaagccctcatttccttcctcgacgtcntcggccgcggctacaaccacctcga 255
            ||||||   | | |||| |||||||||| |||| |||||| ||||  | ||  ||||||
Sbjct: 194 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 253

                                      
Query: 256 cctgtccggccacgacgtcnccgccgt 282
           ||| ||||||||||||||| |||||||
Sbjct: 254 cctctccggccacgacgtctccgccgt 280



to top

>ref|NM_193094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180
           |||||| |||||| | |||||||||||  |||||||| |||||||||| ||||| |||||
Sbjct: 108 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 167

                                                            
Query: 181 ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229
            |||||||| |||  ||||||||  | | |||| ||||||||| |||||
Sbjct: 168 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 216



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                            
Query: 121      gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180
                |||||| |||||| | |||||||||||  |||||||| |||||||||| ||||| |||||
Sbjct: 26161669 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 26161728

                                                                 
Query: 181      ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229
                 |||||||| |||  ||||||||  | | |||| ||||||||| |||||
Sbjct: 26161729 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 26161777



to top

>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full
           insert sequence
          Length = 1165

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180
           |||||| |||||| | |||||||||||  |||||||| |||||||||| ||||| |||||
Sbjct: 156 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 215

                                                            
Query: 181 ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229
            |||||||| |||  ||||||||  | | |||| ||||||||| |||||
Sbjct: 216 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 264



to top

>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                         
Query: 121   gacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggc 180
             |||||| |||||| | |||||||||||  |||||||| |||||||||| ||||| |||||
Sbjct: 53527 gacggggcaggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggc 53586

                                                              
Query: 181   ctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtc 229
              |||||||| |||  ||||||||  | | |||| ||||||||| |||||
Sbjct: 53587 gtgcgacaccggcttgtacaccatggtcgtcatgtccttcctcaacgtc 53635



to top

>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene)
          Length = 915

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                       
Query: 119 aagacgggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgag 178
           ||||| ||||||||| | |||||||||||  ||||||||  |||||| ||||| || |||
Sbjct: 100 aagaccggccaggtgacggtgttctggggacggaacaaggccgagggctccctgcgtgag 159

                                                                    
Query: 179 gcctgcgacactggcacgtacaccaaagccctcatttccttcctcgacgtcntcggc 235
           ||||||||| | || | ||||||||  | |  ||| ||||| ||||||||| |||||
Sbjct: 160 gcctgcgactccggtatgtacaccatggtcaccatgtccttgctcgacgtcttcggc 216



to top

>gb|AC104270.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1037_G10,
             complete sequence
          Length = 181130

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 137   gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189
             |||||||||||  ||||||||  |||||| |||||||| ||||||||||||||
Sbjct: 59973 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacac 60025



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 141   tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 187
             |||||||  |||||||| ||||||| |||||| | ||||||||||||
Sbjct: 71134 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 71180



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 150   ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccaaagccc 209
             |||||||| ||||||| |||||| | ||||||||||| || |||   |||||||  | | 
Sbjct: 93527 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 93586

                           
Query: 210   tcatttccttcctc 223
             ||||||||||||||
Sbjct: 93587 tcatttccttcctc 93600



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 160   cgaggggtccctccgcgaggcctgcgacac 189
             ||||||||||||||| ||||| ||||||||
Sbjct: 15167 cgaggggtccctccgtgaggcgtgcgacac 15138



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 137     gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189
               |||||||||||  ||||||||  |||||| |||||||| ||||||||||||||
Sbjct: 8848048 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacac 8848100



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 141     tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 187
               |||||||  |||||||| ||||||| |||||| | ||||||||||||
Sbjct: 8859209 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 8859255



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                           
Query: 150     ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccaaagccc 209
               |||||||| ||||||| |||||| | ||||||||||| || |||   |||||||  | | 
Sbjct: 8881602 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 8881661

                             
Query: 210     tcatttccttcctc 223
               ||||||||||||||
Sbjct: 8881662 tcatttccttcctc 8881675



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 160     cgaggggtccctccgcgaggcctgcgacac 189
               ||||||||||||||| ||||| ||||||||
Sbjct: 8803242 cgaggggtccctccgtgaggcgtgcgacac 8803213



to top

>dbj|AK106678.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A12, full
           insert sequence
          Length = 938

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194
           |||| ||||||||  |||||||| ||||||| || ||||| |||||||||||||| ||||
Sbjct: 746 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 687



to top

>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full
           insert sequence
          Length = 1161

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                       
Query: 135 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 194
           |||| ||||||||  |||||||| ||||||| || ||||| |||||||||||||| ||||
Sbjct: 191 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 250



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                       
Query: 135      ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189
                |||| ||||||||  | ||||||||||||||  |||| |||||| ||||||||||
Sbjct: 25772019 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 25771965



to top

>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0689E12
          Length = 147516

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 135   ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 189
             |||| ||||||||  | ||||||||||||||  |||| |||||| ||||||||||
Sbjct: 44230 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 44176



to top

>dbj|AK073843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H05, full
           insert sequence
          Length = 1152

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 141 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 187
           |||||||  |||||||| ||||||| |||||| | ||||||||||||
Sbjct: 160 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 206



to top

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 111    ccacggggaagacgggccaggtggcc 136
              ||||||||||||||||| ||||||||
Sbjct: 746231 ccacggggaagacgggcgaggtggcc 746256



to top

>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06,
              complete sequence
          Length = 144457

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 160    cgaggggtccctccgcgaggcctgcgacac 189
              ||||||||||||||| ||||| ||||||||
Sbjct: 135684 cgaggggtccctccgtgaggcgtgcgacac 135655



to top

>dbj|AK065866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045O11, full
           insert sequence
          Length = 1198

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 160 cgaggggtccctccgcgaggcctgcgacac 189
           ||||||||||||||| ||||| ||||||||
Sbjct: 184 cgaggggtccctccgtgaggcgtgcgacac 213



to top

>dbj|AK062114.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C02, full
           insert sequence
          Length = 1199

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 160 cgaggggtccctccgcgaggcctgcgacac 189
           ||||||||||||||| ||||| ||||||||
Sbjct: 183 cgaggggtccctccgtgaggcgtgcgacac 212



to top

>ref|XM_550226.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 759

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 cctccgcgaggcctgcgaca 188
           ||||||||||||||||||||
Sbjct: 133 cctccgcgaggcctgcgaca 152



to top

>ref|XM_549854.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 711

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 cctccgcgaggcctgcgaca 188
           ||||||||||||||||||||
Sbjct: 139 cctccgcgaggcctgcgaca 158



to top

>emb|AJ318884.1|TTU318884 Triticum turgidum subsp. durum xip-II gene for putative xylanase
            inhibitor protein
          Length = 2143

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 120  agacgggccaggtggccgtgttctgggg 147
            ||||||||||| || |||||||||||||
Sbjct: 1106 agacgggccagctgaccgtgttctgggg 1133



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 169      cctccgcgaggcctgcgaca 188
                ||||||||||||||||||||
Sbjct: 24592100 cctccgcgaggcctgcgaca 24592119



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     cctccgcgaggcctgcgaca 188
               ||||||||||||||||||||
Sbjct: 3196087 cctccgcgaggcctgcgaca 3196068



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cctccgcgaggcctgcgaca 188
              ||||||||||||||||||||
Sbjct: 403264 cctccgcgaggcctgcgaca 403245



to top

>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1189A09
          Length = 167761

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   cctccgcgaggcctgcgaca 188
             ||||||||||||||||||||
Sbjct: 13716 cctccgcgaggcctgcgaca 13697



to top

>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0041E11
          Length = 146335

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cctccgcgaggcctgcgaca 188
              ||||||||||||||||||||
Sbjct: 139875 cctccgcgaggcctgcgaca 139856



to top

>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0005A05
          Length = 190834

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cctccgcgaggcctgcgaca 188
              ||||||||||||||||||||
Sbjct: 155102 cctccgcgaggcctgcgaca 155083



to top

>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   cctccgcgaggcctgcgaca 188
             ||||||||||||||||||||
Sbjct: 43465 cctccgcgaggcctgcgaca 43446



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 169      cctccgcgaggcctgcgaca 188
                ||||||||||||||||||||
Sbjct: 24520306 cctccgcgaggcctgcgaca 24520325



to top

>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 143895

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   cctccgcgaggcctgcgaca 188
             ||||||||||||||||||||
Sbjct: 36966 cctccgcgaggcctgcgaca 36985



to top

>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete
             sequence
          Length = 184551

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    cagcctccttcctactcctc 64
             ||||||||||||||||||||
Sbjct: 28263 cagcctccttcctactcctc 28244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,521,428
Number of Sequences: 3902068
Number of extensions: 1521428
Number of successful extensions: 27974
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27684
Number of HSP's gapped (non-prelim): 288
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top