ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07g08 |
|---|---|
| Clone Library Name | barley_pub |
>IAG2_RAT (O35777) Implantation-associated protein| Length = 335 Score = 39.7 bits (91), Expect = 0.005 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Frame = +3 Query: 174 VVHLTDTSVTRFLSSASRPYSVLVFFDATSLHSKTDLHLPQLRREFALLSASFHANNPDS 353 V+ + + + R YSV+V F A LH + + Q EF +L+ + ++ + Sbjct: 53 VIRMNGDKFRPLVKAPPRNYSVIVMFTALQLHRQC-VVCKQADEEFQILANFWRYSSAFT 111 Query: 354 SDLFFADIEFSESQHSYSQFGVNSLPHVRLIRPE-HSRLADSEQMDQSHFS 503 + +FFA ++F E + +NS P P+ + AD+ ++ FS Sbjct: 112 NRIFFAMVDFDEGSDVFQMLNMNSAPTFINFPPKGKPKRADTYELQVRGFS 162
>YO13_CAEEL (P34669) Hypothetical protein ZK686.3 in chromosome III| Length = 331 Score = 31.6 bits (70), Expect = 1.4 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Frame = +3 Query: 225 RPYSVLVFFDATSLHSKTDLHLPQLRREFALLSAS--FHANNPDSSDLFFADIEFSESQH 398 R YS++V F A S + + P EF +++ S + ++ D +FF +++ ++ Sbjct: 47 RNYSMIVMFTALSPGVQCPICKPAYD-EFMIVANSHRYTSSEGDRRKVFFGIVDYEDAPQ 105 Query: 399 SYSQFGVNSLPHVRLIRPEHSRLADSEQMD 488 + Q +N+ P + P+ EQMD Sbjct: 106 IFQQMNLNTAPILYHFGPKLGAKKRPEQMD 135
>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (hDido1) Length = 2240 Score = 30.8 bits (68), Expect = 2.4 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 3/92 (3%) Frame = -1 Query: 391 DSENSMSAKKRSEESGLLAWKEAERSANSRRSWGRWR---SVLEWSEVASKKTRTE*GRE 221 D++ S +R E W ER + R W R R S +W + + RE Sbjct: 2104 DAQGRASEDRRRERERGRNWSR-ERDWDRPREWDRHRDKDSSRDWDRNRERSANRDRERE 2162 Query: 220 ADERKRVTEVSVRWTTPEGERERRDWSSPTRS 125 AD K R E ER+RR +RS Sbjct: 2163 ADRGKEWDRSRERSRNRERERDRRRDRDRSRS 2194
>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-1 (EC 3.6.1.-) (Sex determination protein mog-1) (Masculinization of germ line protein 1) Length = 1131 Score = 29.6 bits (65), Expect = 5.3 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Frame = -1 Query: 385 ENSMSAKKRSEESGLLAWKEAERSANSRRSW----GRWRSVLEWSEVASKKTRTE*GREA 218 + M K R ++ + R +SRR W G + + S+ + + RE Sbjct: 87 DRGMKYKSRDDDRRRDRDRSERREPSSRRGWKDRSGDQTPRFKVPDTPSRMSWDQDDREG 146 Query: 217 DERKRVTEVSVRWTTPEGERERRDWSSPTRSL 122 RKR S TP GER+R+ + RS+ Sbjct: 147 SSRKRN---SWDMPTPRGERDRKRYMDSERSI 175
>SMG_VIBVY (Q7MGK9) Protein smg homolog| Length = 159 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +3 Query: 237 VLVFFDATSLHSKTDLHLPQLRREFALLSASFHANNPDSSDLFFADIEFSESQHSYSQFG 416 +L++ T +HS DL + Q E LL A FH + + L+ ++ + ++S Sbjct: 5 ILMYLFETYIHSDADLQVDQDELEDELLRAGFHQQDIYKALLWLEELAALQQSDAHSAIS 64 Query: 417 -VNSLPHVRLIRPEHSRLADSE 479 +++ R+ P+ + D E Sbjct: 65 RCSAVSSTRVYSPKEMQRLDIE 86
>SMG_VIBVU (Q8DDE0) Protein smg homolog| Length = 159 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +3 Query: 237 VLVFFDATSLHSKTDLHLPQLRREFALLSASFHANNPDSSDLFFADIEFSESQHSYSQFG 416 +L++ T +HS DL + Q E LL A FH + + L+ ++ + ++S Sbjct: 5 ILMYLFETYIHSDADLQVDQDELEDELLRAGFHQQDIYKALLWLEELAALQQSDAHSAIS 64 Query: 417 -VNSLPHVRLIRPEHSRLADSE 479 +++ R+ P+ + D E Sbjct: 65 RCSAVSSTRVYSPKEMQRLDIE 86
>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9| Length = 531 Score = 29.6 bits (65), Expect = 5.3 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 23/94 (24%) Frame = -1 Query: 478 SESARRECSGRMRRTWGRELTPNWE*ECCDSEN-----------------SMSAKKRSEE 350 SE RRE S R R WG P++E C E+ SM+ ++RSE Sbjct: 208 SERDRREESRRHGRNWG---GPDFERVRCGLEHERQGRRAGLGSAGDMTLSMTGRERSE- 263 Query: 349 SGLLAWK------EAERSANSRRSWGRWRSVLEW 266 L WK + ER R+ G+WR EW Sbjct: 264 --YLRWKQEREKIDQERLQRHRKPTGQWRR--EW 293
>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2| Length = 959 Score = 29.6 bits (65), Expect = 5.3 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Frame = -1 Query: 388 SENSMSAKKRS-EESGLLAWKEAERSANS--RRSWGRWRSVLEWSEVASKKTRTE*GREA 218 S + M A++R+ EE+ + +E R+ RR+ R E E A ++ E +A Sbjct: 152 SRSEMDARRRALEEAQIREVEERARAVEEAKRRAEEDARRAKEHEESARRQAEEEARLKA 211 Query: 217 D---ERKRVTEVSVRWTTPEGERERRDWSSP 134 + RK E + R PE ERRD + P Sbjct: 212 EAEARRKAEEEAAKRMPQPEARSERRDDARP 242
>DRD1_DIDMA (P42288) D(1A) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 6.9 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Frame = +3 Query: 162 SPSGVVHLTDTSVTRFLSSASRPY----SVLVFFDATSLHSKTDLHL-----PQLRREFA 314 SP G V D ++ SS SR Y S++ F+ ++ T + Q+RR A Sbjct: 170 SPDGNVSSQDETMDNCDSSLSRTYAISSSLISFYIPVAIMIVTYTRIYRIAQKQIRRISA 229 Query: 315 LLSASFHANNPDSSDLFFADIEFSESQHSY 404 L A+ HA N ++ A++E S+ + S+ Sbjct: 230 LERAAVHAKNCQNTTGNGANVECSQPESSF 259
>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 6.9 Identities = 27/79 (34%), Positives = 34/79 (43%) Frame = -1 Query: 370 AKKRSEESGLLAWKEAERSANSRRSWGRWRSVLEWSEVASKKTRTE*GREADERKRVTEV 191 AK+R+EE A KE E SA + E A K E R+A+E E Sbjct: 181 AKRRAEEDARRA-KEREESARRQAE-----------EEARLKAEAEARRKAEE-----EA 223 Query: 190 SVRWTTPEGERERRDWSSP 134 + R PE ERRD + P Sbjct: 224 AKRMPQPEARSERRDDARP 242
>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 6.9 Identities = 27/79 (34%), Positives = 34/79 (43%) Frame = -1 Query: 370 AKKRSEESGLLAWKEAERSANSRRSWGRWRSVLEWSEVASKKTRTE*GREADERKRVTEV 191 AK+R+EE A KE E SA + E A K E R+A+E E Sbjct: 181 AKRRAEEDARRA-KEREESARRQAE-----------EEARLKAEAEARRKAEE-----EA 223 Query: 190 SVRWTTPEGERERRDWSSP 134 + R PE ERRD + P Sbjct: 224 AKRMPQPEARSERRDDARP 242
>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 6.9 Identities = 27/79 (34%), Positives = 34/79 (43%) Frame = -1 Query: 370 AKKRSEESGLLAWKEAERSANSRRSWGRWRSVLEWSEVASKKTRTE*GREADERKRVTEV 191 AK+R+EE A KE E SA + E A K E R+A+E E Sbjct: 181 AKRRAEEDARRA-KEREESARRQAE-----------EEARLKAEAEARRKAEE-----EA 223 Query: 190 SVRWTTPEGERERRDWSSP 134 + R PE ERRD + P Sbjct: 224 AKRMPQPEARSERRDDARP 242
>SAS10_HUMAN (Q9NQZ2) Something about silencing protein 10 (Disrupter of| silencing SAS10) (Charged amino acid-rich leucine zipper 1) Length = 479 Score = 28.9 bits (63), Expect = 9.0 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = -1 Query: 391 DSENSMSAKKRSEES------GLLAWKEAERSANSRRSWGRWRSVLEWSEVASKKTRTE* 230 D E+ +A + EE G EAE S + SWG+ + + ++ SK + Sbjct: 91 DDEDGGNAGEEEEEENADDDGGSSVQSEAEASVDPSLSWGQRKKLYYDTDYGSKSRGRQS 150 Query: 229 GREADERKRVTE 194 +EA+E +R E Sbjct: 151 QQEAEEEEREEE 162
>TINY_ARATH (Q39127) Transcriptional factor TINY| Length = 218 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 424 ELTPNWE*ECCDSENSMSAKKRSEESGLLAWKEAERSANSRRSWGRWRS 278 E T +WE EN KK ++SG K +R+WG+W S Sbjct: 5 ESTKSWEASAVRQENEEEKKKPVKDSG----KHPVYRGVRKRNWGKWVS 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,298,209 Number of Sequences: 219361 Number of extensions: 519301 Number of successful extensions: 2024 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1975 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2022 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
