Clone Name | bart07g07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY103874.1| Zea mays PCO114884 mRNA sequence Length = 1259 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 362 ataactgttcttagtggaggttctggacaaacaggactatcaggactaatagtacctgca 421 ||||||||||| | |||||||||||||||| ||||| ||||||| || |||||||||||| Sbjct: 385 ataactgttctcaatggaggttctggacaatcaggagtatcaggcctgatagtacctgca 444 Query: 422 gcaactgttggagcactgggttatggttatatgtggtggaaaggcatctc 471 |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 445 gcaactgtaggagcactgggttatggttatatgtggtggaaagggatctc 494 Score = 113 bits (57), Expect = 5e-22 Identities = 107/123 (86%), Gaps = 3/123 (2%) Strand = Plus / Plus Query: 101 cggcgcgcagccatggcgatggtggcacaggcgggcttcggcctcacccgcgtcgtgatg 160 |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||| | Sbjct: 121 cggcgcgcagccatggcgatggtg---caggcgggcatgggcctcacccgggtcgtggtc 177 Query: 161 ctcgtcggcgcgggcgtggccgggtccgtcgtcctacgcaacggccgcctctccgagatc 220 ||||| ||||| ||||| ||||| |||||||| || |||||||| |||||| |||||||| Sbjct: 178 ctcgttggcgccggcgtcgccggctccgtcgttctccgcaacggtcgcctcgccgagatc 237 Query: 221 ctc 223 ||| Sbjct: 238 ctc 240
>dbj|AK104343.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B09, full insert sequence Length = 1342 Score = 143 bits (72), Expect = 6e-31 Identities = 108/120 (90%) Strand = Plus / Plus Query: 362 ataactgttcttagtggaggttctggacaaacaggactatcaggactaatagtacctgca 421 ||||||||||||| |||||||||||| |||||||| | ||||| | |||||||||||| Sbjct: 380 ataactgttcttaatggaggttctggtcaaacaggggtgtcaggtttgatagtacctgca 439 Query: 422 gcaactgttggagcactgggttatggttatatgtggtggaaaggcatctcctttggggac 481 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||| Sbjct: 440 gcaactgttggagcactcggttatggttacatgtggtggaagggcatctcctttgcggac 499 Score = 111 bits (56), Expect = 2e-21 Identities = 130/154 (84%), Gaps = 3/154 (1%) Strand = Plus / Plus Query: 111 ccatggcgatggtggcacaggcgggcttcggcctcacccgcgtcgtgatgctcgtcggcg 170 |||||||||||||| ||||| ||| | ||||||||||||||||| | ||| |||||| Sbjct: 126 ccatggcgatggtg---caggccggcatgggcctcacccgcgtcgttgtcctcatcggcg 182 Query: 171 cgggcgtggccgggtccgtcgtcctacgcaacggccgcctctccgagatcctcacagaga 230 | || ||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 183 ccgggatggccggctccgtcgtcctccgcaacggccgcctctccgagatcctcggcgagc 242 Query: 231 tacaggagtttctggagaagggggagaatgggaa 264 | |||||| | ||||| ||||||||||| ||||| Sbjct: 243 tccaggagatactggacaagggggagaaggggaa 276
>dbj|AK065911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045E01, full insert sequence Length = 1377 Score = 143 bits (72), Expect = 6e-31 Identities = 108/120 (90%) Strand = Plus / Plus Query: 362 ataactgttcttagtggaggttctggacaaacaggactatcaggactaatagtacctgca 421 ||||||||||||| |||||||||||| |||||||| | ||||| | |||||||||||| Sbjct: 400 ataactgttcttaatggaggttctggtcaaacaggggtgtcaggtttgatagtacctgca 459 Query: 422 gcaactgttggagcactgggttatggttatatgtggtggaaaggcatctcctttggggac 481 ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||| Sbjct: 460 gcaactgttggagcactcggttatggttacatgtggtggaagggcatctcctttgcggac 519 Score = 101 bits (51), Expect = 2e-18 Identities = 98/113 (86%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 111 ccatggcgatggtggcacaggcgggcttcggcctcacccgcgtcgtgatgctcgtcggcg 170 |||||||||||||| ||||| ||| | ||||||||||||||||| | ||| |||||| Sbjct: 147 ccatggcgatggtg---caggccggcatgggcctcacccgcgtcgttgtcctcatcggcg 203 Query: 171 cgggcgtggccgggtccgtcgtcctacgcaacggccgcctctccgagatcctc 223 | || ||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 204 ccgggatggccggctccgtcgtcctccgcaacggccgcctctccgagatcctc 256
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 101 bits (51), Expect = 2e-18 Identities = 98/113 (86%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 111 ccatggcgatggtggcacaggcgggcttcggcctcacccgcgtcgtgatgctcgtcggcg 170 |||||||||||||| ||||| ||| | ||||||||||||||||| | ||| |||||| Sbjct: 8615 ccatggcgatggtg---caggccggcatgggcctcacccgcgtcgttgtcctcatcggcg 8671 Query: 171 cgggcgtggccgggtccgtcgtcctacgcaacggccgcctctccgagatcctc 223 | || ||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 8672 ccgggatggccggctccgtcgtcctccgcaacggccgcctctccgagatcctc 8724 Score = 89.7 bits (45), Expect = 8e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 410 atagtacctgcagcaactgttggagcactgggttatggttatatgtggtggaa 462 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 10194 atagtacctgcagcaactgttggagcactcggttatggttacatgtggtggaa 10246 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 362 ataactgttcttagtggaggttctggacaaacagg 396 ||||||||||||| |||||||||||| |||||||| Sbjct: 9733 ataactgttcttaatggaggttctggtcaaacagg 9767
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 101 bits (51), Expect = 2e-18 Identities = 98/113 (86%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 111 ccatggcgatggtggcacaggcgggcttcggcctcacccgcgtcgtgatgctcgtcggcg 170 |||||||||||||| ||||| ||| | ||||||||||||||||| | ||| |||||| Sbjct: 4914030 ccatggcgatggtg---caggccggcatgggcctcacccgcgtcgttgtcctcatcggcg 4914086 Query: 171 cgggcgtggccgggtccgtcgtcctacgcaacggccgcctctccgagatcctc 223 | || ||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 4914087 ccgggatggccggctccgtcgtcctccgcaacggccgcctctccgagatcctc 4914139 Score = 89.7 bits (45), Expect = 8e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 410 atagtacctgcagcaactgttggagcactgggttatggttatatgtggtggaa 462 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 4915609 atagtacctgcagcaactgttggagcactcggttatggttacatgtggtggaa 4915661 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 362 ataactgttcttagtggaggttctggacaaacagg 396 ||||||||||||| |||||||||||| |||||||| Sbjct: 4915148 ataactgttcttaatggaggttctggtcaaacagg 4915182
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 101 bits (51), Expect = 2e-18 Identities = 98/113 (86%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 111 ccatggcgatggtggcacaggcgggcttcggcctcacccgcgtcgtgatgctcgtcggcg 170 |||||||||||||| ||||| ||| | ||||||||||||||||| | ||| |||||| Sbjct: 186438 ccatggcgatggtg---caggccggcatgggcctcacccgcgtcgttgtcctcatcggcg 186494 Query: 171 cgggcgtggccgggtccgtcgtcctacgcaacggccgcctctccgagatcctc 223 | || ||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 186495 ccgggatggccggctccgtcgtcctccgcaacggccgcctctccgagatcctc 186547 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 362 ataactgttcttagtggaggttctggacaaacagg 396 ||||||||||||| |||||||||||| |||||||| Sbjct: 187556 ataactgttcttaatggaggttctggtcaaacagg 187590
>ref|NM_165193.1| Drosophila melanogaster Ugt36Bc CG17932-RB, transcript variant B (Ugt36Bc), mRNA Length = 1951 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 atacaggagtttctggagaaggg 252 ||||||||||||||||||||||| Sbjct: 1144 atacaggagtttctggagaaggg 1166
>ref|NM_144370.2| Drosophila melanogaster Ugt36Bc CG17932-RA, transcript variant A (Ugt36Bc), mRNA Length = 1931 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 atacaggagtttctggagaaggg 252 ||||||||||||||||||||||| Sbjct: 1124 atacaggagtttctggagaaggg 1146
>gb|AY070939.1| Drosophila melanogaster RE03785 full length cDNA Length = 1946 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 atacaggagtttctggagaaggg 252 ||||||||||||||||||||||| Sbjct: 1124 atacaggagtttctggagaaggg 1146
>gb|AC093097.1| Drosophila melanogaster, chromosome 2L, region 36A-36B, BAC clone BACR26O03, complete sequence Length = 175413 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 atacaggagtttctggagaaggg 252 ||||||||||||||||||||||| Sbjct: 173868 atacaggagtttctggagaaggg 173890
>gb|AC009250.3|AC009250 Drosophila melanogaster, chromosome 2L, region 36B-36B, BAC clone BACR27M18, complete sequence Length = 170362 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 230 atacaggagtttctggagaaggg 252 ||||||||||||||||||||||| Sbjct: 166923 atacaggagtttctggagaaggg 166901
>gb|AE003652.2| Drosophila melanogaster chromosome 2L, section 61 of 83 of the complete sequence Length = 262525 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 230 atacaggagtttctggagaaggg 252 ||||||||||||||||||||||| Sbjct: 184902 atacaggagtttctggagaaggg 184924
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 gacgcgcggcggcgcgcagcca 113 |||||||||||||||||||||| Sbjct: 2240876 gacgcgcggcggcgcgcagcca 2240855 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tcggcgcgggcgtggccggg 184 |||||||||||||||||||| Sbjct: 3481015 tcggcgcgggcgtggccggg 3481034
>ref|NM_189608.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 42.1 bits (21), Expect = 1.6 Identities = 51/61 (83%) Strand = Plus / Plus Query: 148 ccgcgtcgtgatgctcgtcggcgcgggcgtggccgggtccgtcgtcctacgcaacggccg 207 ||||||||| | ||||||||||| ||| ||||||| || |||||| | ||| ||||||| Sbjct: 33 ccgcgtcgtcctcctcgtcggcgccggcatggccggctcggtcgtcatccgcgacggccg 92 Query: 208 c 208 | Sbjct: 93 c 93
>ref|NM_195084.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071I20.21), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 gctcgtcggcgcgggcgtggc 180 ||||||||||||||||||||| Sbjct: 604 gctcgtcggcgcgggcgtggc 584
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 cgggcgtggccgggtccgtcg 191 ||||||||||||||||||||| Sbjct: 1152922 cgggcgtggccgggtccgtcg 1152942
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 gtcgtgatgctcgtcggcgcgggcg 176 |||| |||||||||||||||||||| Sbjct: 990777 gtcgcgatgctcgtcggcgcgggcg 990753
>emb|AL512343.21| Human DNA sequence from clone RP11-396C23 on chromosome 1 Contains the H3F3A gene for H3 histone, family 3A, a nove gene and four CpG islands, complete sequence Length = 105087 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 ctggagaagggggagaatggg 262 ||||||||||||||||||||| Sbjct: 68149 ctggagaagggggagaatggg 68169
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 386 ggacaaacaggactatcaggactaa 410 ||||||||||||||| ||||||||| Sbjct: 1207607 ggacaaacaggactaacaggactaa 1207631
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 gtcgtgatgctcgtcggcgcgggcg 176 |||| |||||||||||||||||||| Sbjct: 833307 gtcgcgatgctcgtcggcgcgggcg 833283
>gb|AC113337.2| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0061H20, from chromosome 10, complete sequence Length = 135876 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gctcgtcggcgcgggcgtggc 180 ||||||||||||||||||||| Sbjct: 21165 gctcgtcggcgcgggcgtggc 21185
>emb|AL645985.30| Mouse DNA sequence from clone DN-240H8 on chromosome 3 Contains part of a novel gene, a ribosomal protein L36 (Rpl36) pseudogene and a pseudogene similar to part of ribosomal protein S2 (Rps2), complete sequence Length = 141661 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 gaagggggagaatgggaaggg 267 ||||||||||||||||||||| Sbjct: 97201 gaagggggagaatgggaaggg 97221
>gb|AC074355.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071I20, complete sequence Length = 145510 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gctcgtcggcgcgggcgtggc 180 ||||||||||||||||||||| Sbjct: 142484 gctcgtcggcgcgggcgtggc 142504
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gctcgtcggcgcgggcgtggc 180 ||||||||||||||||||||| Sbjct: 4595121 gctcgtcggcgcgggcgtggc 4595141
>gb|AC009743.1| Homo sapiens 3 BAC RP11-372H2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159821 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 agaatgggaagggaggaggtg 275 ||||||||||||||||||||| Sbjct: 22696 agaatgggaagggaggaggtg 22676
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gctcgtcggcgcgggcgtggc 180 ||||||||||||||||||||| Sbjct: 4595942 gctcgtcggcgcgggcgtggc 4595962
>gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complete sequence Length = 157757 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gaatgggaagggaggaggtgg 276 ||||||||||||||||||||| Sbjct: 69448 gaatgggaagggaggaggtgg 69428
>gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, complete sequence Length = 167842 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gaatgggaagggaggaggtgg 276 ||||||||||||||||||||| Sbjct: 15546 gaatgggaagggaggaggtgg 15526
>ref|NM_102463.3| Arabidopsis thaliana DNA binding AT1G27000 mRNA, complete cds Length = 1355 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 464 tatggttatatgtggtggaa 483
>ref|XM_470166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1626 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 1130 gccgcctctccgagatcctc 1149
>gb|AC107681.15| Mus musculus chromosome 12, clone RP23-380M24, complete sequence Length = 186496 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gagaatgggaagggaggagg 273 |||||||||||||||||||| Sbjct: 86036 gagaatgggaagggaggagg 86055
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 34686159 gccgcctctccgagatcctc 34686178
>gb|AC118227.12| Mus musculus chromosome 15, clone RP23-379H6, complete sequence Length = 200663 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 aggagtttctggagaagggggaga 257 |||||||||||||||||| ||||| Sbjct: 51867 aggagtttctggagaaggaggaga 51890
>emb|AL627089.13| Mouse DNA sequence from clone RP23-107H23 on chromosome 4, complete sequence Length = 182375 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 ggagaagggggagaatgggaaggg 267 |||||||||| ||||||||||||| Sbjct: 28971 ggagaaggggaagaatgggaaggg 28948
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cgcggcggcgcgcagccatg 115 |||||||||||||||||||| Sbjct: 1601852 cgcggcggcgcgcagccatg 1601871
>emb|AL358394.14| Human DNA sequence from clone RP11-445N18 on chromosome 10 Contains four novel genes, the 5' end of a novel gene, a Ras suppressor protein 1 pseudogene, a pseudogene similar to part of cubilin (intrinsic factor-cobalamin receptor, CUBN), the 5' end of a breast cancer antigen (NY-BR-1) pseudogene, a ribosomal protein S19 pseudogene, and a novel pseudogene similar to part of KIAA1052 protein, complete sequence Length = 116859 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aatgggaagggaggaggtgg 276 |||||||||||||||||||| Sbjct: 47065 aatgggaagggaggaggtgg 47084
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 143876 gccgcctctccgagatcctc 143895
>gb|AY056367.1| Arabidopsis thaliana unknown protein (At1g27000) mRNA, complete cds Length = 946 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 322 tatggttatatgtggtggaa 341
>gb|AF360143.1| Arabidopsis thaliana unknown protein (At1g27000) mRNA, complete cds Length = 1272 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 397 tatggttatatgtggtggaa 416
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cgtcggcgcgggcgtggccg 182 |||||||||||||||||||| Sbjct: 288766 cgtcggcgcgggcgtggccg 288747
>emb|AJ320506.1|MMU320506 Mus musculus Dlk1 gene for delta-like and Gtl2 gene Length = 111805 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gagaatgggaagggaggagg 273 |||||||||||||||||||| Sbjct: 30873 gagaatgggaagggaggagg 30854
>gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence Length = 194187 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aatgggaagggaggaggtgg 276 |||||||||||||||||||| Sbjct: 153702 aatgggaagggaggaggtgg 153721
>gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase (sorE), beta-hydroxybutyryl-CoA dehydrogenase (sorD), putative methoxymalonyl-CoA synthase (sorC), reductase (sorR), soraphen polyketide synthase A (sorA), soraphen polyketide synthase B (sorB), O-methyltransferase (sorM), beta-mannanase, and xylanse-arabinofuranosidase bifunctional enzyme genes, complete cds; and unknown genes Length = 67523 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 cgcgtcgtgatgctcgtcggcgcgggcg 176 |||| |||| |||||||||||||||||| Sbjct: 2159 cgcggcgtgctgctcgtcggcgcgggcg 2186
>gb|AY057525.1| Arabidopsis thaliana At1g27000/T7N9_6 mRNA, complete cds Length = 1257 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 397 tatggttatatgtggtggaa 416
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 34776231 gccgcctctccgagatcctc 34776250
>emb|BX815536.1|CNS0ABGY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1264 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 464 tatggttatatgtggtggaa 483
>emb|BX832674.1|CNS0A24I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZG08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1434 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 ggaggaggtggcggtgcgga 285 |||||||||||||||||||| Sbjct: 1217 ggaggaggtggcggtgcgga 1198
>gb|AC020917.4|AC020917 Homo sapiens chromosome 19 clone CTD-2013N17, complete sequence Length = 151088 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 ctggagaagggggagaatgggaag 265 |||||||| ||||||||||||||| Sbjct: 98137 ctggagaaaggggagaatgggaag 98160
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence Length = 111566 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 16389 tatggttatatgtggtggaa 16408
>gb|AY085110.1| Arabidopsis thaliana clone 13008 mRNA, complete sequence Length = 1244 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 395 tatggttatatgtggtggaa 414
>dbj|AK109423.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G05, full insert sequence Length = 1584 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 916 gccgcctctccgagatcctc 935
>dbj|AK120398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087C11, full insert sequence Length = 2770 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 2102 gccgcctctccgagatcctc 2121
>dbj|AK110355.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-H12, full insert sequence Length = 3574 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gtcggcgcgggcgtggccgg 183 |||||||||||||||||||| Sbjct: 403 gtcggcgcgggcgtggccgg 384
>dbj|AK067486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108N23, full insert sequence Length = 3621 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 2971 gccgcctctccgagatcctc 2990
>dbj|AK064956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A06, full insert sequence Length = 5529 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 4861 gccgcctctccgagatcctc 4880
>dbj|AK061994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C05, full insert sequence Length = 1936 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gccgcctctccgagatcctc 223 |||||||||||||||||||| Sbjct: 1222 gccgcctctccgagatcctc 1241
>gb|AY104267.1| Zea mays PCO085704 mRNA sequence Length = 1009 Score = 40.1 bits (20), Expect = 6.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 419 gcagcaactgttggagcactgggttatggttatatgtggtggaa 462 |||||| | ||||||||| |||||||| | || ||||||||||| Sbjct: 432 gcagcagcagttggagcaatgggttattgctacatgtggtggaa 475
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence Length = 85372 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tatggttatatgtggtggaa 462 |||||||||||||||||||| Sbjct: 82843 tatggttatatgtggtggaa 82862
>gb|AC154284.1| Mus musculus BAC clone RP23-452N24 from 16, complete sequence Length = 182088 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 244 ggagaagggggagaatgggaagggagga 271 |||||||||| |||| |||||||||||| Sbjct: 34285 ggagaaggggaagaaggggaagggagga 34258
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 gggggagaatgggaagggaggagg 273 |||||| ||||||||||||||||| Sbjct: 549122 gggggaaaatgggaagggaggagg 549145
>gb|AC165954.3| Mus musculus BAC clone RP23-450F5 from chromosome 12, complete sequence Length = 184826 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gagaatgggaagggaggagg 273 |||||||||||||||||||| Sbjct: 6066 gagaatgggaagggaggagg 6085
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tcggcgcgggcgtggccggg 184 |||||||||||||||||||| Sbjct: 890149 tcggcgcgggcgtggccggg 890130 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,189,598 Number of Sequences: 3902068 Number of extensions: 3189598 Number of successful extensions: 75061 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73938 Number of HSP's gapped (non-prelim): 1117 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)