ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 45 7e-05
2UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 45 7e-05
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 42 6e-04

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 304 VWGLAQCRGDVPRQNCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAXFI 465
           V G+  C GDV R  C+ C+  A  E+A +C    +  ++Y  C++RYS   F+
Sbjct: 79  VHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFL 132



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 313 LAQCRGDVPRQNCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTA 456
           + QC   +  +NC+ CL  A +E+   C       +F   CL+ + T+
Sbjct: 198 VVQCSPHLDPKNCTTCLKLALQELTQCCGDQLWAFIFTPKCLVSFDTS 245



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>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = +1

Query: 154 SGVDAIGTYC---AXNGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 321
           S  D + T+C   + N TS  T   +++ +L+ L                    V G+  
Sbjct: 24  SDPDDMETFCMKSSRNTTSNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFL 83

Query: 322 CRGDVPRQNCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAXFI 465
           C GDV R  C+ C+  A  E+A +C    +  ++   C++RYS   F+
Sbjct: 84  CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRYSDKFFL 131



 Score = 32.0 bits (71), Expect = 0.85
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 313 LAQCRGDVPRQNCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYST 453
           + QC  D+  +NC+ CL  A +E+   C       ++   C++ + T
Sbjct: 197 IVQCTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDT 243



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = +1

Query: 154 SGVDAIGTYC--AXNGTSAET--QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 321
           S  D + T+C  +   T+  T    +++ +L+                      V+G+  
Sbjct: 28  SETDHMDTFCIDSSRNTTGNTTYNKNLNTMLSTFRNQSSIVNNYNLTTGLASDTVYGMFL 87

Query: 322 CRGDVPRQNCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAXFI 465
           C GDV    C+ C+  A  E+  +C    +  ++Y  C++RYS   F+
Sbjct: 88  CTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRYSDKFFL 135



 Score = 32.3 bits (72), Expect = 0.65
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 313 LAQCRGDVPRQNCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRY 447
           L QC   +  +NC++CL  A +E+   C       +F   C + Y
Sbjct: 201 LVQCSPHLNPENCTICLEYALQEIIDCCSDKFWAMIFTPNCFVNY 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,478,640
Number of Sequences: 219361
Number of extensions: 316142
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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