ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008989.1| Triticum aestivum clone wdk2c.pk010.a3:fis, full ... 664 0.0
2gb|BT009015.1| Triticum aestivum clone wdk3c.pk006.f13:fis, full... 571 e-160
3dbj|AB110188.1| Oryza sativa (japonica cultivar-group) mRNA for ... 402 e-109
4dbj|AK068424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 402 e-109
5gb|AY224545.1| Oryza sativa (japonica cultivar-group) isolate 23... 392 e-106
6gb|AY224464.1| Oryza sativa (japonica cultivar-group) isolate 23... 392 e-106
7gb|AY109267.1| Zea mays PCO080109 mRNA sequence 381 e-102
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 218 1e-53
9gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome... 218 1e-53
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
12dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
13dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
14dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
15ref|NM_189740.1| Oryza sativa (japonica cultivar-group), predic... 107 3e-20
16ref|NM_189735.1| Oryza sativa (japonica cultivar-group), predic... 107 3e-20
17gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome... 96 1e-16
18dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
19dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
20dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
21gb|AC149482.1| Populus trichocarpa clone Pop1-69G3, complete seq... 52 0.002
22gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
23ref|NM_031751.2| Rattus norvegicus SH3 and multiple ankyrin repe... 48 0.026
24gb|AF131951.1|AF131951 Rattus norvegicus Shank1a mRNA, complete cds 48 0.026
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
26gb|AF159046.1|AF159046 Rattus norvegicus SPANK-1 mRNA, complete cds 48 0.026
27gb|AF102855.2|AF102855 Rattus norvegicus synaptic SAPAP-interact... 48 0.026
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
29gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete s... 44 0.40
30ref|NM_191016.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
31gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
32gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, co... 42 1.6
33gb|DQ483119.1| Gymnogyps californianus clone 11A microsatellite ... 42 1.6
34emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.6
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
36dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
37dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
38dbj|AK112112.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
39gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 42 1.6
40gb|U25126.1|ASU25126 Anas sp. carboxypeptidase gp180 mRNA, compl... 42 1.6
41ref|XM_468314.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
42ref|NM_001003392.1| Canis familiaris keratin 1 (epidermolytic hy... 40 6.3
43gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.3
44gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.3
45ref|XM_654670.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.3
46ref|XM_001001982.1| PREDICTED: Mus musculus SH3/ankyrin domain g... 40 6.3
47ref|XM_901401.2| PREDICTED: Mus musculus SH3/ankyrin domain gene... 40 6.3
48ref|XM_894241.2| PREDICTED: Mus musculus SH3/ankyrin domain gene... 40 6.3
49ref|XM_620487.3| PREDICTED: Mus musculus SH3/ankyrin domain gene... 40 6.3
50emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 6.3
51emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 6.3
52dbj|AK082624.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 6.3
53dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
54gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome... 40 6.3
55gb|AC126475.5| Homo sapiens 3 BAC RP11-356O23 (Roswell Park Canc... 40 6.3
56dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
57dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
58dbj|AK109650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
59emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in ... 40 6.3
60emb|X99978.2|LPARGCL Lactobacillus plantarum subsp. plantarum ci... 40 6.3
61gb|AY318945.1| Canis familiaris epithelial keratin 1 (Ker1) mRNA... 40 6.3
62emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in l... 40 6.3
63gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosom... 40 6.3 
>gb|BT008989.1| Triticum aestivum clone wdk2c.pk010.a3:fis, full insert mRNA
           sequence
          Length = 1137

 Score =  664 bits (335), Expect = 0.0
 Identities = 430/462 (93%), Gaps = 10/462 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   tctctctgtctctagcccgtgccgc-cggcgaggtccccctcctcctccggccgcctcgc 63
           ||||||||||||   |||||||||  ||||||||||||||||  |||||||||||||| |
Sbjct: 9   tctctctgtctcctccccgtgccggacggcgaggtccccctctccctccggccgcctctc 68

                                                                       
Query: 64  tcctccgcacccgtcgcgtatcggttccacgggcgccgcggcggccggtctccgacgcca 123
            ||||||  |||||||||| ||||||||||||||||         ||||||||||||| |
Sbjct: 69  ccctccgtccccgtcgcgtctcggttccacgggcgc---------cggtctccgacgcta 119

                                                                       
Query: 124 tggggttcctcgaggacttccaggccagtgttgaaacattgccagctatgctgcacaaga 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tggggttcctcgaggactttcaggccagtgttgaaacattgccagctatgctgcacaaga 179

                                                                       
Query: 184 attattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagctggaaaatgagc 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 actattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagctggaaaatgagc 239

                                                                       
Query: 244 agcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaagtattacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaagtattacaa 299

                                                                       
Query: 304 catatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaagcattgtg 363
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 300 catatgagccagcaaaacttaaattttctgatgaggcaatcgaggagcagaaacattgtg 359

                                                                       
Query: 364 ttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggttgatgctc 423
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 360 ttaggattgctgatgagaaggtggctttagccacacaaacatatgacctggtcgacgctc 419

                                                     
Query: 424 atatccnacaacttgatcaattcatgaggaagcttgaagaac 465
           |||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 420 atatccaacagcttgatcaatacatgaggaagcttgaagaac 461
to top
>gb|BT009015.1| Triticum aestivum clone wdk3c.pk006.f13:fis, full insert mRNA
           sequence
          Length = 960

 Score =  571 bits (288), Expect = e-160
 Identities = 317/327 (96%)
 Strand = Plus / Plus

                                                                       
Query: 139 acttccaggccagtgttgaaacattgccagctatgctgcacaagaattattcattaatgc 198
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1   actttcaggccagtgttgaaacattgccagctatgctgcacaagaactattcattaatgc 60

                                                                       
Query: 199 gagagctcgataaaagcttgcaaggtgtgcagctggaaaatgagcagcgatgtcaacaag 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gagagctcgataaaagcttgcaaggtgtgcagctggaaaatgagcagcgatgtcaacaag 120

                                                                       
Query: 259 aaatagaggacattaagcatggacttgaatctggaagtattacaacatatgagccagcaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatagaggacattaagcatggacttgaatctggaagtattacaacatatgagccagcaa 180

                                                                       
Query: 319 aacttaaattttctgatgaggcaatcgaggaacagaagcattgtgttaggattgctgatg 378
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 181 aacttaaattttctgatgaggcaatcgaggagcagaaacattgtgttaggattgctgatg 240

                                                                       
Query: 379 agaaggtggctttagccacacaaacgtatgacctggttgatgctcatatccnacaacttg 438
           ||||||||||||||||||||||||| ||||||||||| || |||||||||| ||| ||||
Sbjct: 241 agaaggtggctttagccacacaaacatatgacctggtcgacgctcatatccaacagcttg 300

                                      
Query: 439 atcaattcatgaggaagcttgaagaac 465
           |||||| ||||||||||||||||||||
Sbjct: 301 atcaatacatgaggaagcttgaagaac 327
to top
>dbj|AB110188.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 16FPG004
          Length = 1079

 Score =  402 bits (203), Expect = e-109
 Identities = 312/348 (89%), Gaps = 3/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 118 acgccatggggttcctcgaggacttccaggccagtgttgaaacattgccagctatgctgc 177
           ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct: 61  acgccatggggttcctcgaggactttcaagccagtgttgaagcattgccagctatgctgc 120

                                                                       
Query: 178 acaagaattattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagctggaaa 237
           | | ||| |||||||||||||| ||||| |||||||||||||||||||||||   || ||
Sbjct: 121 aaaggaactattcattaatgcgggagctagataaaagcttgcaaggtgtgcaaacgggaa 180

                                                                       
Query: 238 atgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaagta 297
           |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 atgagcagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaagta 240

                                                                       
Query: 298 ttacaacatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaagc 357
           ||   |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct: 241 tt---acatatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaagc 297

                                                                       
Query: 358 attgtgttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggttg 417
           |||||||| | ||||||||||||||||||||||||||||  || || |||||||||||||
Sbjct: 298 attgtgttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggttg 357

                                                           
Query: 418 atgctcatatccnacaacttgatcaattcatgaggaagcttgaagaac 465
           |||||||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 358 atgctcatatccaacagctagatcagtttatgagaaaacttgaagaac 405
to top
>dbj|AK068424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154F02, full
           insert sequence
          Length = 1225

 Score =  402 bits (203), Expect = e-109
 Identities = 312/348 (89%), Gaps = 3/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 118 acgccatggggttcctcgaggacttccaggccagtgttgaaacattgccagctatgctgc 177
           ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct: 151 acgccatggggttcctcgaggactttcaagccagtgttgaagcattgccagctatgctgc 210

                                                                       
Query: 178 acaagaattattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagctggaaa 237
           | | ||| |||||||||||||| ||||| |||||||||||||||||||||||   || ||
Sbjct: 211 aaaggaactattcattaatgcgggagctagataaaagcttgcaaggtgtgcaaacgggaa 270

                                                                       
Query: 238 atgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaagta 297
           |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 271 atgagcagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaagta 330

                                                                       
Query: 298 ttacaacatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaagc 357
           ||   |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct: 331 tt---acatatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaagc 387

                                                                       
Query: 358 attgtgttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggttg 417
           |||||||| | ||||||||||||||||||||||||||||  || || |||||||||||||
Sbjct: 388 attgtgttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggttg 447

                                                           
Query: 418 atgctcatatccnacaacttgatcaattcatgaggaagcttgaagaac 465
           |||||||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 448 atgctcatatccaacagctagatcagtttatgagaaaacttgaagaac 495
to top
>gb|AY224545.1| Oryza sativa (japonica cultivar-group) isolate 23830 putative
           PHD-finger protein mRNA, complete cds
          Length = 762

 Score =  392 bits (198), Expect = e-106
 Identities = 307/343 (89%), Gaps = 3/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 123 atggggttcctcgaggacttccaggccagtgttgaaacattgccagctatgctgcacaag 182
           |||||||||||||||||||| || |||||||||||| ||||||||||||||||||| | |
Sbjct: 1   atggggttcctcgaggactttcaagccagtgttgaagcattgccagctatgctgcaaagg 60

                                                                       
Query: 183 aattattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagctggaaaatgag 242
           || |||||||||||||| ||||| |||||||||||||||||||||||   || |||||||
Sbjct: 61  aactattcattaatgcgggagctagataaaagcttgcaaggtgtgcaaacgggaaatgag 120

                                                                       
Query: 243 cagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaagtattaca 302
           ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||   
Sbjct: 121 cagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaagtatt--- 177

                                                                       
Query: 303 acatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaagcattgt 362
           |||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 178 acatatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaagcattgt 237

                                                                       
Query: 363 gttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggttgatgct 422
           ||| | ||||||||||||||||||||||||||||  || || ||||||||||||||||||
Sbjct: 238 gttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggttgatgct 297

                                                      
Query: 423 catatccnacaacttgatcaattcatgaggaagcttgaagaac 465
           ||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 298 catatccaacagctagatcagtttatgagaaaacttgaagaac 340
to top
>gb|AY224464.1| Oryza sativa (japonica cultivar-group) isolate 23830 putative
           PHD-finger protein mRNA, complete cds
          Length = 762

 Score =  392 bits (198), Expect = e-106
 Identities = 307/343 (89%), Gaps = 3/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 123 atggggttcctcgaggacttccaggccagtgttgaaacattgccagctatgctgcacaag 182
           |||||||||||||||||||| || |||||||||||| ||||||||||||||||||| | |
Sbjct: 1   atggggttcctcgaggactttcaagccagtgttgaagcattgccagctatgctgcaaagg 60

                                                                       
Query: 183 aattattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagctggaaaatgag 242
           || |||||||||||||| ||||| |||||||||||||||||||||||   || |||||||
Sbjct: 61  aactattcattaatgcgggagctagataaaagcttgcaaggtgtgcaaacgggaaatgag 120

                                                                       
Query: 243 cagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaagtattaca 302
           ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||   
Sbjct: 121 cagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaagtatt--- 177

                                                                       
Query: 303 acatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaagcattgt 362
           |||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 178 acatatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaagcattgt 237

                                                                       
Query: 363 gttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggttgatgct 422
           ||| | ||||||||||||||||||||||||||||  || || ||||||||||||||||||
Sbjct: 238 gttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggttgatgct 297

                                                      
Query: 423 catatccnacaacttgatcaattcatgaggaagcttgaagaac 465
           ||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 298 catatccaacagctagatcagtttatgagaaaacttgaagaac 340
to top
>gb|AY109267.1| Zea mays PCO080109 mRNA sequence
          Length = 1112

 Score =  381 bits (192), Expect = e-102
 Identities = 313/353 (88%), Gaps = 3/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 112 tctccgacgccatggggttcctcgaggacttccaggccagtgttgaaacattgccagcta 171
           |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct: 131 tctccggcgccatggggttcctcgaggacttccaagccagtgttgaagcattgccatcta 190

                                                                       
Query: 172 tgctgcacaagaattattcattaatgcgagagctcgataaaagcttgcaaggtgtgcagc 231
           |||||||   ||| |||||||||||||||||| | |||||||| ||||| |||||||| |
Sbjct: 191 tgctgcatcggaactattcattaatgcgagagttggataaaagtttgcatggtgtgcaac 250

                                                                       
Query: 232 tggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctg 291
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tagaaaatgagcagcgctgtcaacaagaaatagaggacattaagcatggacttgaatctg 310

                                                                       
Query: 292 gaagtattacaacatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaac 351
           ||||||||   |||||||| ||||||||| | |||||||| || || ||||| ||||| |
Sbjct: 311 gaagtatt---acatatgacccagcaaaattgaaattttccgaagaagcaatggaggagc 367

                                                                       
Query: 352 agaagcattgtgttaggattgctgatgagaaggtggctttagccacacaaacgtatgacc 411
           |||| ||||||||||| |||||||| |||||||||||||||||||| || || |||||| 
Sbjct: 368 agaaacattgtgttagaattgctgacgagaaggtggctttagccactcagacttatgact 427

                                                                
Query: 412 tggttgatgctcatatccnacaacttgatcaattcatgaggaagcttgaagaa 464
           | ||||||||||| |||| ||| || ||||| || ||||||||||||||||||
Sbjct: 428 tagttgatgctcacatccaacagctagatcagtttatgaggaagcttgaagaa 480
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  218 bits (110), Expect = 1e-53
 Identities = 163/180 (90%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                           
Query: 236     aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
               |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2393414 aaatgagcagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaag 2393473

                                                                           
Query: 296     tattacaacatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaa 355
               |||||||   ||||| || ||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 2393474 tattaca---tatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaa 2393530

                                                                           
Query: 356     gcattgtgttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggt 415
               |||||||||| | ||||||||||||||||||||||||||||  || || |||||||||||
Sbjct: 2393531 gcattgtgttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggt 2393590



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                           
Query: 151     gtgttgaaacattgccagctatgctgcacaagaattattcattaatgcgagagctcgata 210
               |||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||| ||||
Sbjct: 2392721 gtgttgaagcattgccagctatgctgcaaaggaactattcattaatgcgggagctagata 2392780

                             
Query: 211     aaagcttgcaaggt 224
               ||||||||||||||
Sbjct: 2392781 aaagcttgcaaggt 2392794



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 118     acgccatggggttcctcgaggacttccaggccagtg 153
               ||||||||||||||||||||||||| || |||||||
Sbjct: 2391716 acgccatggggttcctcgaggactttcaagccagtg 2391751



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                    
Query: 413     ggttgatgctcatatccnacaacttgatcaattcatgaggaagcttgaagaac 465
               ||||||||||||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 2394032 ggttgatgctcatatccaacagctagatcagtttatgagaaaacttgaagaac 2394084
to top
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24,
              complete sequence
          Length = 150503

 Score =  218 bits (110), Expect = 1e-53
 Identities = 163/180 (90%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                          
Query: 236    aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
              |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 110256 aaatgagcagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaag 110315

                                                                          
Query: 296    tattacaacatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaa 355
              |||||||   ||||| || ||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 110316 tattaca---tatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaa 110372

                                                                          
Query: 356    gcattgtgttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggt 415
              |||||||||| | ||||||||||||||||||||||||||||  || || |||||||||||
Sbjct: 110373 gcattgtgttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggt 110432



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                          
Query: 151    gtgttgaaacattgccagctatgctgcacaagaattattcattaatgcgagagctcgata 210
              |||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||| ||||
Sbjct: 109563 gtgttgaagcattgccagctatgctgcaaaggaactattcattaatgcgggagctagata 109622

                            
Query: 211    aaagcttgcaaggt 224
              ||||||||||||||
Sbjct: 109623 aaagcttgcaaggt 109636



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 118    acgccatggggttcctcgaggacttccaggccagtg 153
              ||||||||||||||||||||||||| || |||||||
Sbjct: 108558 acgccatggggttcctcgaggactttcaagccagtg 108593



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                   
Query: 413    ggttgatgctcatatccnacaacttgatcaattcatgaggaagcttgaagaac 465
              ||||||||||||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 110874 ggttgatgctcatatccaacagctagatcagtttatgagaaaacttgaagaac 110926
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  218 bits (110), Expect = 1e-53
 Identities = 163/180 (90%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                           
Query: 236     aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
               |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2393524 aaatgagcagcgctgtcagcaagaaatagaagacattaagcatggacttgaatctggaag 2393583

                                                                           
Query: 296     tattacaacatatgagccagcaaaacttaaattttctgatgaggcaatcgaggaacagaa 355
               |||||||   ||||| || ||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 2393584 tattaca---tatgacccggcaaagcttaaattttctgatgaagcaatcgaggagcagaa 2393640

                                                                           
Query: 356     gcattgtgttaggattgctgatgagaaggtggctttagccacacaaacgtatgacctggt 415
               |||||||||| | ||||||||||||||||||||||||||||  || || |||||||||||
Sbjct: 2393641 gcattgtgttcgaattgctgatgagaaggtggctttagccagtcagacttatgacctggt 2393700



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                           
Query: 151     gtgttgaaacattgccagctatgctgcacaagaattattcattaatgcgagagctcgata 210
               |||||||| ||||||||||||||||||| | ||| |||||||||||||| ||||| ||||
Sbjct: 2392831 gtgttgaagcattgccagctatgctgcaaaggaactattcattaatgcgggagctagata 2392890

                             
Query: 211     aaagcttgcaaggt 224
               ||||||||||||||
Sbjct: 2392891 aaagcttgcaaggt 2392904



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 118     acgccatggggttcctcgaggacttccaggccagtg 153
               ||||||||||||||||||||||||| || |||||||
Sbjct: 2391826 acgccatggggttcctcgaggactttcaagccagtg 2391861



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                    
Query: 413     ggttgatgctcatatccnacaacttgatcaattcatgaggaagcttgaagaac 465
               ||||||||||||||||| ||| || ||||| || ||||| || ||||||||||
Sbjct: 2394142 ggttgatgctcatatccaacagctagatcagtttatgagaaaacttgaagaac 2394194
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                            
Query: 221      aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
                |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 41475371 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 41475430

                                                                         
Query: 281      acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
                |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 41475431 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 41475484



 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                            
Query: 221      aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
                |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 41444398 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 41444457

                                                                         
Query: 281      acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
                |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 41444458 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 41444511



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 54       gccgcctcgctcctccgcacc 74
                |||||||||||||||||||||
Sbjct: 34319168 gccgcctcgctcctccgcacc 34319188
to top
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0432C03
          Length = 164394

 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                          
Query: 221    aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
              |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 135891 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 135950

                                                                       
Query: 281    acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
              |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 135951 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 136004
to top
>dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0614D08
          Length = 147548

 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                         
Query: 221   aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
             |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 31664 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 31723

                                                                      
Query: 281   acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
             |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 31724 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 31777



 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 221 aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
           |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 691 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 750

                                                                    
Query: 281 acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
           |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 751 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 804
to top
>dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0660F12
          Length = 147203

 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                         
Query: 221   aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
             |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 43570 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 43629

                                                                      
Query: 281   acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
             |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 43630 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 43683



 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                         
Query: 221   aggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgg 280
             |||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| |||||
Sbjct: 12597 aggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgg 12656

                                                                      
Query: 281   acttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
             |||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 12657 acttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 12710
to top
>ref|NM_189740.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 471

 Score =  107 bits (54), Expect = 3e-20
 Identities = 101/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                       
Query: 222 ggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgga 281
           ||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| ||||||
Sbjct: 340 ggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgga 399

                                                                   
Query: 282 cttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
           ||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 400 cttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 452
to top
>ref|NM_189735.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 555

 Score =  107 bits (54), Expect = 3e-20
 Identities = 101/116 (87%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                       
Query: 222 ggtgtgcagctggaaaatgagcagcgatgtcaacaagaaatagaggacattaagcatgga 281
           ||||||||  ||| |||||||||||| |||||  |||||||||| |||| ||| ||||||
Sbjct: 424 ggtgtgcaaatgggaaatgagcagcgctgtcagaaagaaatagaagacactaaacatgga 483

                                                                   
Query: 282 cttgaatctggaagtattacaacatatgagccagcaaaacttaaattttctgatga 337
           ||||||||||||||||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 484 cttgaatctggaagtatt---acatatgacccggcaaagcttaaattttctgatga 536
to top
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05,
             complete sequence
          Length = 82985

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 89/102 (87%), Gaps = 3/102 (2%)
 Strand = Plus / Minus

                                                                         
Query: 236   aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
             ||||||| |||| ||||| |||||||||||  ||| ||| ||||||||||||||||||||
Sbjct: 44144 aaatgagtagcgctgtcagcaagaaatagaacacactaaacatggacttgaatctggaag 44085

                                                       
Query: 296   tattacaacatatgagccagcaaaacttaaattttctgatga 337
             ||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 44084 tatt---acatatgacccggcaaagcttaaattttctgatga 44046
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 89/102 (87%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                            
Query: 236      aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
                ||||||| |||| ||||| |||||||||||  ||| ||| ||||||||||||||||||||
Sbjct: 12869546 aaatgagtagcgctgtcagcaagaaatagaacacactaaacatggacttgaatctggaag 12869605

                                                          
Query: 296      tattacaacatatgagccagcaaaacttaaattttctgatga 337
                ||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 12869606 tatt---acatatgacccggcaaagcttaaattttctgatga 12869644
to top
>dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone: B1052H09
          Length = 190806

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 89/102 (87%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                        
Query: 236  aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
            ||||||| |||| ||||| |||||||||||  ||| ||| ||||||||||||||||||||
Sbjct: 6526 aaatgagtagcgctgtcagcaagaaatagaacacactaaacatggacttgaatctggaag 6585

                                                      
Query: 296  tattacaacatatgagccagcaaaacttaaattttctgatga 337
            ||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 6586 tatt---acatatgacccggcaaagcttaaattttctgatga 6624
to top
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0061E21
          Length = 155085

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 89/102 (87%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                         
Query: 236   aaatgagcagcgatgtcaacaagaaatagaggacattaagcatggacttgaatctggaag 295
             ||||||| |||| ||||| |||||||||||  ||| ||| ||||||||||||||||||||
Sbjct: 70064 aaatgagtagcgctgtcagcaagaaatagaacacactaaacatggacttgaatctggaag 70123

                                                       
Query: 296   tattacaacatatgagccagcaaaacttaaattttctgatga 337
             ||||   |||||||| || ||||| |||||||||||||||||
Sbjct: 70124 tatt---acatatgacccggcaaagcttaaattttctgatga 70162
to top
>gb|AC149482.1| Populus trichocarpa clone Pop1-69G3, complete sequence
          Length = 107795

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 235   aaaatgagcagcgatgtcaacaagaaatagaggacattaagc 276
             ||||||| || |||||  ||||||||||||||||||||||||
Sbjct: 13484 aaaatgaacaacgatgcgaacaagaaatagaggacattaagc 13443
to top
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0058P12, complete sequence
          Length = 173073

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 19    gcccgtgccgccggcgaggtccccctcctcct 50
             |||||||||||||||||| ||| |||||||||
Sbjct: 92253 gcccgtgccgccggcgagctcctcctcctcct 92284
to top
>ref|NM_031751.2| Rattus norvegicus SH3 and multiple ankyrin repeat domains 1 (Shank1),
            mRNA
          Length = 7585

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 39   ccccctcctcctccggccgcctcgctcc 66
            ||||||||||||||||||||||| ||||
Sbjct: 2925 ccccctcctcctccggccgcctcactcc 2952
to top
>gb|AF131951.1|AF131951 Rattus norvegicus Shank1a mRNA, complete cds
          Length = 7087

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 39   ccccctcctcctccggccgcctcgctcc 66
            ||||||||||||||||||||||| ||||
Sbjct: 2822 ccccctcctcctccggccgcctcactcc 2849
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 19      gcccgtgccgccggcgaggtccccctcctcct 50
               |||||||||||||||||| ||| |||||||||
Sbjct: 4902640 gcccgtgccgccggcgagctcctcctcctcct 4902609
to top
>gb|AF159046.1|AF159046 Rattus norvegicus SPANK-1 mRNA, complete cds
          Length = 7585

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 39   ccccctcctcctccggccgcctcgctcc 66
            ||||||||||||||||||||||| ||||
Sbjct: 2925 ccccctcctcctccggccgcctcactcc 2952
to top
>gb|AF102855.2|AF102855 Rattus norvegicus synaptic SAPAP-interacting protein Synamon mRNA,
            complete cds
          Length = 6477

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 39   ccccctcctcctccggccgcctcgctcc 66
            ||||||||||||||||||||||| ||||
Sbjct: 2810 ccccctcctcctccggccgcctcactcc 2837
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 19      gcccgtgccgccggcgaggtccccctcctcct 50
               |||||||||||||||||| ||| |||||||||
Sbjct: 4921424 gcccgtgccgccggcgagctcctcctcctcct 4921393
to top
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
          Length = 96953

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 208   ataaaagcttgcaaggtgtgca 229
             ||||||||||||||||||||||
Sbjct: 78464 ataaaagcttgcaaggtgtgca 78485
to top
>ref|NM_191016.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1506

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  gccgcctcgctcctccgcacc 74
           |||||||||||||||||||||
Sbjct: 484 gccgcctcgctcctccgcacc 504
to top
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01,
              complete sequence
          Length = 180426

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ccccctcctcctccggccgcc 59
              |||||||||||||||||||||
Sbjct: 123112 ccccctcctcctccggccgcc 123092
to top
>gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, complete sequence; putative Bowman
            Birk trypsin inhibitor gene, complete cds; Stowaway MITE,
            complete sequence; and insertion sequences xl_tt1a and
            xl_tt1b putative ripening related protein genes, complete
            cds
          Length = 26073

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 39   ccccctcctcctccggccgcc 59
            |||||||||||||||||||||
Sbjct: 5180 ccccctcctcctccggccgcc 5160
to top
>gb|DQ483119.1| Gymnogyps californianus clone 11A microsatellite sequence
          Length = 396

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 41  ccctcctcctccggccgcctcgctcctcc 69
           |||||||||||| |||||||| |||||||
Sbjct: 314 ccctcctcctcccgccgcctctctcctcc 286
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 98     gccgcggcggccggtctccgacgcc 122
              |||||||||||||||| ||||||||
Sbjct: 851639 gccgcggcggccggtcgccgacgcc 851663
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 39       ccccctcctcctccggccgcc 59
                |||||||||||||||||||||
Sbjct: 15731008 ccccctcctcctccggccgcc 15730988
to top
>dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0702B09
          Length = 172541

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     gccgcctcgctcctccgcacc 74
              |||||||||||||||||||||
Sbjct: 154854 gccgcctcgctcctccgcacc 154874
to top
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0468B07
          Length = 169071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 54   gccgcctcgctcctccgcacc 74
            |||||||||||||||||||||
Sbjct: 1512 gccgcctcgctcctccgcacc 1532
to top
>dbj|AK112112.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D02, full
           insert sequence
          Length = 1853

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  gccgcctcgctcctccgcacc 74
           |||||||||||||||||||||
Sbjct: 600 gccgcctcgctcctccgcacc 620
to top
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    cacgggcgccgcggcggccgg 111
             |||||||||||||||||||||
Sbjct: 45459 cacgggcgccgcggcggccgg 45439
to top
>gb|U25126.1|ASU25126 Anas sp. carboxypeptidase gp180 mRNA, complete cds
          Length = 4284

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 39  ccccctcctcctccggccgcc 59
           |||||||||||||||||||||
Sbjct: 172 ccccctcctcctccggccgcc 152
to top
>ref|XM_468314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 873

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  cccctcctcctccggccgcc 59
           ||||||||||||||||||||
Sbjct: 456 cccctcctcctccggccgcc 475
to top
>ref|NM_001003392.1| Canis familiaris keratin 1 (epidermolytic hyperkeratosis) (KRT1),
           mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  gtccccctcctcctccggcc 56
           ||||||||||||||||||||
Sbjct: 265 gtccccctcctcctccggcc 246
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 84     tcggttccacgggcgccgcggcgg 107
              |||||||||||| |||||||||||
Sbjct: 507391 tcggttccacggacgccgcggcgg 507368
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     cgataaaagcttgcaaggtg 225
               ||||||||||||||||||||
Sbjct: 4011651 cgataaaagcttgcaaggtg 4011670
to top
>ref|XM_654670.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2158.2), mRNA
          Length = 1062

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  tcggttccacgggcgccgcg 103
           ||||||||||||||||||||
Sbjct: 12  tcggttccacgggcgccgcg 31
to top
>ref|XM_001001982.1| PREDICTED: Mus musculus SH3/ankyrin domain gene 1 (Shank1), mRNA
          Length = 6595

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 39   ccccctcctcctccggccgcctcgctcc 66
            |||||||||| |||||||||||| ||||
Sbjct: 2852 ccccctcctcttccggccgcctcactcc 2879
to top
>ref|XM_901401.2| PREDICTED: Mus musculus SH3/ankyrin domain gene 1, transcript
           variant 4 (Shank1), mRNA
          Length = 3594

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 39  ccccctcctcctccggccgcctcgctcc 66
           |||||||||| |||||||||||| ||||
Sbjct: 435 ccccctcctcttccggccgcctcactcc 462
to top
>ref|XM_894241.2| PREDICTED: Mus musculus SH3/ankyrin domain gene 1, transcript variant
            3 (Shank1), mRNA
          Length = 6692

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 39   ccccctcctcctccggccgcctcgctcc 66
            |||||||||| |||||||||||| ||||
Sbjct: 2889 ccccctcctcttccggccgcctcactcc 2916
to top
>ref|XM_620487.3| PREDICTED: Mus musculus SH3/ankyrin domain gene 1, transcript
           variant 2 (Shank1), mRNA
          Length = 3594

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 39  ccccctcctcctccggccgcctcgctcc 66
           |||||||||| |||||||||||| ||||
Sbjct: 435 ccccctcctcttccggccgcctcactcc 462
to top
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    cacgggcgccgcggcggccg 110
             ||||||||||||||||||||
Sbjct: 89617 cacgggcgccgcggcggccg 89598
to top
>emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 2/11
          Length = 324050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ctggaaaatgagcagcgatg 250
              ||||||||||||||||||||
Sbjct: 134245 ctggaaaatgagcagcgatg 134226
to top
>dbj|AK082624.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230071B06 product:SPANK-1
           homolog [Rattus norvegicus], full insert sequence
          Length = 3452

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 39  ccccctcctcctccggccgcctcgctcc 66
           |||||||||| |||||||||||| ||||
Sbjct: 286 ccccctcctcttccggccgcctcactcc 313
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 40       cccctcctcctccggccgcc 59
                ||||||||||||||||||||
Sbjct: 34578215 cccctcctcctccggccgcc 34578196
to top
>gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome 7, complete sequence
          Length = 205980

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 39     ccccctcctcctccggccgcctcgctcc 66
              |||||||||| |||||||||||| ||||
Sbjct: 109992 ccccctcctcttccggccgcctcactcc 110019
to top
>gb|AC126475.5| Homo sapiens 3 BAC RP11-356O23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 115086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  acttaaattttctgatgagg 339
            ||||||||||||||||||||
Sbjct: 6709 acttaaattttctgatgagg 6690
to top
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1520_C09
          Length = 145553

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    cccctcctcctccggccgcc 59
             ||||||||||||||||||||
Sbjct: 89155 cccctcctcctccggccgcc 89136
to top
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G06
          Length = 122580

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    cccctcctcctccggccgcc 59
             ||||||||||||||||||||
Sbjct: 44830 cccctcctcctccggccgcc 44811
to top
>dbj|AK109650.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A11, full
           insert sequence
          Length = 879

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  cccctcctcctccggccgcc 59
           ||||||||||||||||||||
Sbjct: 462 cccctcctcctccggccgcc 481
to top
>emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in linkage group 16,
              complete sequence
          Length = 213678

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    gtgcagctggaaaatgagca 244
              ||||||||||||||||||||
Sbjct: 131719 gtgcagctggaaaatgagca 131700
to top
>emb|X99978.2|LPARGCL Lactobacillus plantarum subsp. plantarum citrulline biosynthetic gene
            cluster (carAB operon and argC, J, B, D, F-ccl operon)
            and usg and dsg partial sequences
          Length = 11180

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  ctggaaaatgagcagcgatg 250
            ||||||||||||||||||||
Sbjct: 5153 ctggaaaatgagcagcgatg 5134
to top
>gb|AY318945.1| Canis familiaris epithelial keratin 1 (Ker1) mRNA, complete cds
          Length = 1860

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  gtccccctcctcctccggcc 56
           ||||||||||||||||||||
Sbjct: 265 gtccccctcctcctccggcc 246
to top
>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2,
             complete sequence
          Length = 214484

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 171   atgctgcacaagaattattcatta 194
             |||||||||||| |||||||||||
Sbjct: 27749 atgctgcacaagtattattcatta 27726
to top
>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence
          Length = 206284

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 39     ccccctcctcctccggccgcctcgctcc 66
              |||||||||| |||||||||||| ||||
Sbjct: 198811 ccccctcctcttccggccgcctcactcc 198784


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,112,592
Number of Sequences: 3902068
Number of extensions: 5112592
Number of successful extensions: 152511
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151579
Number of HSP's gapped (non-prelim): 911
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top