ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSZ2_PYRFU (Q8U3E3) Cell division protein ftsZ homolog 2 30 3.5
2ROR2_HUMAN (Q01974) Tyrosine-protein kinase transmembrane recept... 28 7.7
3ROR2_MOUSE (Q9Z138) Tyrosine-protein kinase transmembrane recept... 28 7.7
4LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (... 28 7.7
5GASR_BOVIN (P79266) Gastrin/cholecystokinin type B receptor (CCK... 28 7.7

>FTSZ2_PYRFU (Q8U3E3) Cell division protein ftsZ homolog 2|
          Length = 408

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -2

Query: 339 GEADALTEESNRTKKCNLCGIADPYDSREKGFPDQNASRAGARRTTM 199
           G  +ALT+ S+     +   I DP    EK FPD N SRAG +R ++
Sbjct: 351 GNVNALTDSSSWVVPKDRRLIGDP--RIEKMFPDFNGSRAGRKRPSV 395



to top

>ROR2_HUMAN (Q01974) Tyrosine-protein kinase transmembrane receptor ROR2|
           precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase,
           receptor-related 2)
          Length = 943

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 66  GNPPPPIRWLRN 101
           GNPPP +RWL+N
Sbjct: 87  GNPPPNVRWLKN 98



to top

>ROR2_MOUSE (Q9Z138) Tyrosine-protein kinase transmembrane receptor ROR2|
           precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase,
           receptor-related 2) (mROR2)
          Length = 944

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 66  GNPPPPIRWLRN 101
           GNPPP +RWL+N
Sbjct: 87  GNPPPNVRWLKN 98



to top

>LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (Protein Muf1)|
          Length = 843

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 29/119 (24%), Positives = 43/119 (36%)
 Frame = +2

Query: 44  PSLRRHGRESPAANPVAEESSVLPSEIRVGPDLSSKICSIVLCISRRRALKFMVVLRAPA 223
           P  R  G  S    P  +E S+L    R   D + + C+  L  SRR++    +   APA
Sbjct: 239 PPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAER-CAAALMASRRKSEAKQMPRAAPA 297

Query: 224 LEAF*SGNPFSLES*GSAIPQRLHFFVLLDSSVRASASPDMTTGAVAGSFPESSEPLLP 400
                     SL + G+ + + LH       +     SP       + S   SS    P
Sbjct: 298 TRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAP 356



to top

>GASR_BOVIN (P79266) Gastrin/cholecystokinin type B receptor (CCK-B receptor)|
           (CCK-BR) (Cholecystokinin-2 receptor) (CCK2-R)
          Length = 454

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 256 GERISGSECFESRSSKNNHEFQRAAPGDTENDTADLRAQIRSDTNFAGED 107
           G R  G    ES+S   +   Q   PG T    A    + RS+T  AGED
Sbjct: 248 GLRFDGDSDSESQSRVGS---QGGLPGGTGQGPAQANGRCRSETRLAGED 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,484,121
Number of Sequences: 219361
Number of extensions: 1100407
Number of successful extensions: 3852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3852
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top