>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
 Frame = +3

Query: 114  AVVRLRQRHESPAASGRSRRLRYS------QKASPPCIRVPACTSVPSASGSASKNLRIP 275
            A  R R R   P++ G S     S      Q ASPP   VPA  S P  +      LR+P
Sbjct: 7217 AAFRPRGRRSRPSSRGASPNRSTSGSSHACQAASPP---VPAAASTPKGTPIQGSKLRLP 7273

Query: 276  RRPSG---HRAEDQA 311
               SG   H  ED A
Sbjct: 7274 GYLSGKGFHSGEDSA 7288

>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 589

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -2

Query: 356 LGTPDSW*AKCLPSLSLILG--------AVTGGPPGDPQV 261
           LG P SW   CLP L L+LG         VT   PGDP +
Sbjct: 4   LGHPRSWSCHCLPVLILLLGIGHGPRVEGVTHYKPGDPVI 43

>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 606

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -2

Query: 356 LGTPDSW*AKCLPSLSLILG--------AVTGGPPGDPQV 261
           LG P SW   CLP L L+LG         VT   PGDP +
Sbjct: 4   LGYPRSWSCHCLPVLILLLGIGHGPWVEGVTHYKPGDPVI 43

>LIFO1_BURCE (P22089) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase activator protein) (Lipase modulator)
          Length = 344

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
 Frame = +3

Query: 78  RASSCHGRAGREAVVRLRQ-----RHESPAASGRSRRLRYSQ--KASPPCIRVPACTSV- 233
           R +  +G  G  A+  +       RH    ASG       ++   A+PP   VPA TS+ 
Sbjct: 12  RRAVVYGAVGLAAIAGVAMWSGAGRHGGTGASGEPPDASAARGPAAAPPQAAVPASTSLP 71

Query: 234 PSASGSASKNLRIPRRPSGHRAEDQA 311
           PS +GS++   R+P    GH A+ +A
Sbjct: 72  PSLAGSSAP--RLPLDAGGHLAKARA 95

>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)|
          Length = 900

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 120 VRLRQRHESPAASGRSRRLRYSQKASPPCIRVPACTSVPSASGSASKNLRIPRRPSGH 293
           V + ++ E P      + L+  QK +PP  +    ++  S SGS S +++ P+R   H
Sbjct: 673 VGMHKKQEDP------KTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAH 724

>ATS8_MOUSE (P57110) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 8) (ADAM-TS
           8) (ADAM-TS8) (METH-2)
          Length = 905

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 26/72 (36%), Positives = 30/72 (41%)
 Frame = +1

Query: 220 LALLYRQLQAPPPKTCGSPGGPPVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFD 399
           L LL  QL  PPP  CG+P GP   A    L     L     G   E A H   F  GF 
Sbjct: 13  LLLLLLQLP-PPPLVCGAPAGPGTGAQASELVVPTRL----PGSASELAFHLSAFGQGF- 66

Query: 400 SCRYDALRVSPE 435
                 LR++P+
Sbjct: 67  -----VLRLAPD 73

>PRM2_BOVIN (P19782) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 112

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +3

Query: 105 GREAVVRLRQRHESPAASGRSRRLRYSQ------KASPPCIRVPACTSVPSASGSASKNL 266
           GR    R   RH S   + R RR R  +       A PPC  +P  T   S  GS  + +
Sbjct: 43  GRTHRGRYHYRHRSHTRAYRRRRRRACRHRSRRGAAGPPCAPIPG-TPQASRQGSGCRRM 101

Query: 267 RIPRRPSGHR 296
           R  RR  G +
Sbjct: 102 RRRRRRCGRQ 111

>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
 Frame = +3

Query: 108 REAVVRLRQRHESPAASGRSRRLRYSQ--------------KASPPCIRVPACTSVPSAS 245
           R+A  + R R  S   S RSR   YS+              +A P     P     P  +
Sbjct: 752 RQAPAQQRGRQRSYTPSDRSRSRSYSRSRSPRGRSYTRSPDRAGPQASTAPRSGGPPRKA 811

Query: 246 GSASKNLRIPRRPSGHRA 299
           GS      + R PSG R+
Sbjct: 812 GSVDNRSPLSRSPSGSRS 829

>KJ45_SCHPO (O74526) Probable serine/threonine-protein kinase C70.05c (EC|
           2.7.11.1)
          Length = 781

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 138 HESPAASGRSRRLRYSQ-----KASPPCIRVPACTSVPSASGSASKNLRIPRRPSGHRAE 302
           H S   +G+S  +  SQ     K SPP  R  A   VP  + SAS NL   + P+G+  E
Sbjct: 166 HPSSPVNGKSSDIHKSQSYQHLKNSPPNSRT-ARKPVPRRANSASHNLGSTKSPNGNAKE 224

>CUT2_CAEEL (P34682) Cuticlin-2 precursor|
          Length = 231

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 250 PPPKTCGSPGGPPVTAPRIRL 312
           PPP  CG+P  PP+  PR  L
Sbjct: 35  PPPCGCGAPALPPLQLPRFEL 55

>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle|
            myosin heavy chain IIc) (NMHC II-C)
          Length = 1995

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 220  AGTRMQ-GGEAFWLYRSRRERPEAAGLSCRWRRRTTASRPALPWQEEARQVQARQSE 53
            AG R Q   EA    R+ RE   A      WRRR      AL   EEAR+  AR++E
Sbjct: 1363 AGLREQLEEEAAARERAGRELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAE 1419

>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)|
           (SAP90/PSD-95-associated protein 3) (SAPAP3)
           (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 253 PPKTCGSPGGPPVTAP 300
           PP T GSPG PPV AP
Sbjct: 747 PPATDGSPGPPPVPAP 762

>YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I|
          Length = 498

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 398 SNPWTKTILCLACSLGTPDSW*AKCLPSLSLILGAVTGGP 279
           S P   TILC  C + TP +  A C+  + +     +G P
Sbjct: 15  SEPIASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIP 54

>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -2

Query: 482 PGRSKDTM*IPSSCASSGDTRRASYLHESNPWTKTILCLACSLGTPDSW*AKCLP 318
           P   KD   +   C + GD  R      S P+ + +       GTP  W   CLP
Sbjct: 694 PTECKDASVLDECCPTCGDGYRMLKFRLSTPYYRGVF------GTPSGWYKTCLP 742

>H11_HUMAN (Q02539) Histone H1.1|
          Length = 214

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 153 ASGRSRRLRYSQKASPPCIRVPACTSVPSASGSASKNLRIPR 278
           A+G S++L+ +  AS   ++ P     P+A+  +SKN + P+
Sbjct: 131 ATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPK 172

>MESD2_HUMAN (Q14696) Mesoderm development candidate 2 (NY-REN-61 antigen)|
          Length = 234

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +1

Query: 184 AKRLPRLAFVFLLA--LLYRQLQAPPPKTC---GSPGGPPVTAPRIRLSDGRHLAYHESG 348
           A R  R A V L A  LL   L  PPP +C   GSPG P  + P  R        Y+++ 
Sbjct: 3   ASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYNDAD 62

Query: 349 VPR 357
           + R
Sbjct: 63  MAR 65

>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)|
          Length = 582

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 132 QRHESPAASGRSRRLRYSQKASPPCIRVPACTSVPSASGSASKNLRIPRRPSG 290
           QR       G+ + ++   K  PP    P  +  PS+S S+S +   P+RP G
Sbjct: 451 QRPPPQGGPGQPQGMQPPGKVLPPRRLPPGPSLPPSSSSSSSSSSSAPQRPGG 503

>SCX_CHICK (P59101) Basic helix-loop-helix transcription factor scleraxis|
          Length = 187

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -3

Query: 244 EADGTEVQAGTRMQGGEAFWLYRSRRERPEAAGLSCRWRRRT-------TASRPALPWQE 86
           +ADG  ++AG R  G +A  L+R  R+R  A   + R R RT       TA R  +P + 
Sbjct: 42  DADGFGIKAGKRRSGKKAGRLHREPRQRHTA---NARERDRTNSVNTAFTALRTLIPTEP 98

Query: 85  EARQV 71
             R++
Sbjct: 99  ADRKL 103

>LIFO2_BURCE (Q9ZEM5) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase activator protein) (Lipase modulator)
          Length = 344

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 192 ASPPCIRVPACTSVPSASGSASKNLRIPRRPSGHRAEDQA 311
           A+PP   +PA T +PS+   +S   R+P    GH A+ +A
Sbjct: 57  AAPPQAALPASTGLPSSLAGSSAP-RLPLDAGGHLAKSRA 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,946,125
Number of Sequences: 219361
Number of extensions: 1403001
Number of successful extensions: 5213
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5205
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)