Clone Name | bart07f05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosome 7, complete sequence Length = 186858 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cacaccatttccctttccccc 57 ||||||||||||||||||||| Sbjct: 137960 cacaccatttccctttccccc 137980
>emb|BX004969.5| Zebrafish DNA sequence from clone CH211-89C12 in linkage group 7, complete sequence Length = 161142 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 atcgagcctgcccttctcg 26 ||||||||||||||||||| Sbjct: 23660 atcgagcctgcccttctcg 23642
>emb|AL845507.8| Zebrafish DNA sequence from clone CH211-196F15, complete sequence Length = 166074 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 atcgagcctgcccttctcg 26 ||||||||||||||||||| Sbjct: 13518 atcgagcctgcccttctcg 13536
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 38.2 bits (19), Expect = 2.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 36 ccacaccatttccctttcccccg 58 ||||| ||||||||||||||||| Sbjct: 163889 ccacagcatttccctttcccccg 163911
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 atcatatcgagcctgccc 20 |||||||||||||||||| Sbjct: 1588336 atcatatcgagcctgccc 1588319
>gb|AF109076.1| Homo sapiens chromosome 7 map 7q36 BAC H6, complete sequence Length = 113345 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 38 acaccatttccctttccc 55 |||||||||||||||||| Sbjct: 110102 acaccatttccctttccc 110085
>gb|AC186168.1| Ornithorhynchus anatinus chromosome UNK clone OABb-35C10, complete sequence Length = 133373 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 33 tctccacaccatttccct 50 |||||||||||||||||| Sbjct: 10681 tctccacaccatttccct 10698
>ref|XM_382632.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02456.1) partial mRNA Length = 1758 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 tcgagcctgcccttctcg 26 |||||||||||||||||| Sbjct: 1655 tcgagcctgcccttctcg 1638
>gb|AC073236.8| Homo sapiens BAC clone RP11-774B15 from 7, complete sequence Length = 171012 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 38 acaccatttccctttccc 55 |||||||||||||||||| Sbjct: 82622 acaccatttccctttccc 82605
>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence Length = 141868 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 ctccacaccatttccctt 51 |||||||||||||||||| Sbjct: 29720 ctccacaccatttccctt 29703
>emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 in linkage group 25, complete sequence Length = 168993 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 32 gtctccacaccatttccc 49 |||||||||||||||||| Sbjct: 101245 gtctccacaccatttccc 101262
>gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 229621 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 36 ccacaccatttccctttc 53 |||||||||||||||||| Sbjct: 75781 ccacaccatttccctttc 75764
>gb|AC090763.7| Homo sapiens chromosome 15, clone RP11-408F10, complete sequence Length = 149304 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 ctccacaccatttccctt 51 |||||||||||||||||| Sbjct: 143046 ctccacaccatttccctt 143029
>gb|AC153579.10| Mus musculus 6 BAC RP23-21F2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228481 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 37 cacaccatttccctttcc 54 |||||||||||||||||| Sbjct: 166691 cacaccatttccctttcc 166708
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 gcctgcccttctcgctcg 30 |||||||||||||||||| Sbjct: 11635067 gcctgcccttctcgctcg 11635084
>gb|AF157613.2|AF157613 Toxoplasma gondii acetyl-CoA carboxylase 2 (ACC2) gene, partial cds Length = 12955 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 ccttctcgctcgcgtctc 36 |||||||||||||||||| Sbjct: 4558 ccttctcgctcgcgtctc 4575
>gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromosome 7, complete sequence Length = 180623 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 acaccatttccctttccc 55 |||||||||||||||||| Sbjct: 32847 acaccatttccctttccc 32864
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 gcctgcccttctcgctcg 30 |||||||||||||||||| Sbjct: 81356 gcctgcccttctcgctcg 81373
>gb|BT024080.1| Zea mays clone EL01N0527F08 mRNA sequence Length = 2180 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 ctccacaccatttccctt 51 |||||||||||||||||| Sbjct: 905 ctccacaccatttccctt 888
>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete sequence Length = 200242 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 ctccacaccatttccctt 51 |||||||||||||||||| Sbjct: 143516 ctccacaccatttccctt 143533
>emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, complete sequence Length = 209875 Score = 36.2 bits (18), Expect = 9.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 32 gtctccacaccatttccc 49 |||||||||||||||||| Sbjct: 20787 gtctccacaccatttccc 20770 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 421,440 Number of Sequences: 3902068 Number of extensions: 421440 Number of successful extensions: 28330 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28289 Number of HSP's gapped (non-prelim): 41 length of query: 63 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 42 effective length of database: 17,151,101,840 effective search space: 720346277280 effective search space used: 720346277280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)