ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07f01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 908 Score = 139 bits (70), Expect = 4e-30 Identities = 122/140 (87%) Strand = Plus / Plus Query: 87 agcaatggcgtccatcancgtgcaggtgtccgccctgctcctcaacctcatcgccttcgg 146 ||||||||||||||||| ||||| | |||| ||| |||||| || ||||||||||||| Sbjct: 113 agcaatggcgtccatcatcgtgctcgcctccgtcctcctcctcgacgtcatcgccttcgg 172 Query: 147 cctcgccgtcgccgccgagcagcgccgcancaaggccacggtgacgcccgatctggccaa 206 ||||||||||||||||||||||||||||| |||||| |||||||||||||| || || Sbjct: 173 cctcgccgtcgccgccgagcagcgccgcagcaaggcgacggtgacgcccgactcggagaa 232 Query: 207 ggagtacgactactgcgtct 226 | ||||||||||||||||| Sbjct: 233 gctgtacgactactgcgtct 252
>dbj|AK059964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F08, full insert sequence Length = 908 Score = 139 bits (70), Expect = 4e-30 Identities = 122/140 (87%) Strand = Plus / Plus Query: 87 agcaatggcgtccatcancgtgcaggtgtccgccctgctcctcaacctcatcgccttcgg 146 ||||||||||||||||| ||||| | |||| ||| |||||| || ||||||||||||| Sbjct: 113 agcaatggcgtccatcatcgtgctcgcctccgtcctcctcctcgacgtcatcgccttcgg 172 Query: 147 cctcgccgtcgccgccgagcagcgccgcancaaggccacggtgacgcccgatctggccaa 206 ||||||||||||||||||||||||||||| |||||| |||||||||||||| || || Sbjct: 173 cctcgccgtcgccgccgagcagcgccgcagcaaggcgacggtgacgcccgactcggagaa 232 Query: 207 ggagtacgactactgcgtct 226 | ||||||||||||||||| Sbjct: 233 gctgtacgactactgcgtct 252
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 115 bits (58), Expect = 6e-23 Identities = 86/96 (89%) Strand = Plus / Minus Query: 87 agcaatggcgtccatcancgtgcaggtgtccgccctgctcctcaacctcatcgccttcgg 146 ||||||||||||||||| ||||| | |||| ||| |||||| || ||||||||||||| Sbjct: 16176976 agcaatggcgtccatcatcgtgctcgcctccgtcctcctcctcgacgtcatcgccttcgg 16176917 Query: 147 cctcgccgtcgccgccgagcagcgccgcancaaggc 182 ||||||||||||||||||||||||||||| |||||| Sbjct: 16176916 cctcgccgtcgccgccgagcagcgccgcagcaaggc 16176881 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 27998894 tcggccacgccgtcgccgccgagc 27998917 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 27991756 tcggccgcgccgtcgccgccgagc 27991779
>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F09 Length = 166568 Score = 115 bits (58), Expect = 6e-23 Identities = 86/96 (89%) Strand = Plus / Minus Query: 87 agcaatggcgtccatcancgtgcaggtgtccgccctgctcctcaacctcatcgccttcgg 146 ||||||||||||||||| ||||| | |||| ||| |||||| || ||||||||||||| Sbjct: 147309 agcaatggcgtccatcatcgtgctcgcctccgtcctcctcctcgacgtcatcgccttcgg 147250 Query: 147 cctcgccgtcgccgccgagcagcgccgcancaaggc 182 ||||||||||||||||||||||||||||| |||||| Sbjct: 147249 cctcgccgtcgccgccgagcagcgccgcagcaaggc 147214
>gb|AY104561.1| Zea mays PCO100178 mRNA sequence Length = 1105 Score = 71.9 bits (36), Expect = 8e-10 Identities = 77/91 (84%) Strand = Plus / Plus Query: 136 atcgccttcggcctcgccgtcgccgccgagcagcgccgcancaaggccacggtgacgccc 195 |||||||||||||| | ||||||||||||||||||||| | | |||||| || || || Sbjct: 204 atcgccttcggcctgggcgtcgccgccgagcagcgccggagccgggccaccgtcaccccg 263 Query: 196 gatctggccaaggagtacgactactgcgtct 226 || ||||||||||||||||||||||||| Sbjct: 264 gacgccgccaaggagtacgactactgcgtct 294
>gb|AC092489.4| Oryza sativa chromosome 10 BAC OSJNBa0066I08 genomic sequence, complete sequence Length = 25375 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 137 tcgccttcggcctcgccgtcgccgccgagcagcgccgc 174 ||||||||||||||||| |||||||||||||| ||||| Sbjct: 4654 tcgccttcggcctcgccatcgccgccgagcagagccgc 4691
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 137 tcgccttcggcctcgccgtcgccgccgagcagcgccgc 174 ||||||||||||||||| |||||||||||||| ||||| Sbjct: 18354063 tcgccttcggcctcgccatcgccgccgagcagagccgc 18354100
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 3e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 137 tcgccttcggcctcgccgtcgccgccgagcagcgccgc 174 ||||||||||||||||| |||||||||||||| ||||| Sbjct: 18364116 tcgccttcggcctcgccatcgccgccgagcagagccgc 18364153
>ref|XM_481095.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1042 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 125 tcctcaacctcatcgccttcggcctcgccgtcgccgccgagc 166 ||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 164 tcctcaacctcttcgccttcctcctcgccgtcggcgccgagc 205
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 125 tcctcaacctcatcgccttcggcctcgccgtcgccgccgagc 166 ||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 9827542 tcctcaacctcttcgccttcctcctcgccgtcggcgccgagc 9827501 Score = 44.1 bits (22), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 115 tccgccctgctcctcaacctcatcgccttc 144 |||||||| |||||||||||| |||||||| Sbjct: 4589639 tccgccctcctcctcaacctcctcgccttc 4589610 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 27285426 tcggcctcgccgtcgccgccg 27285406 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 ||||||||||||||||| ||| |||||| Sbjct: 25054511 cctcgccgtcgccgccgcgcaccgccgc 25054484
>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1063H10 Length = 170453 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 125 tcctcaacctcatcgccttcggcctcgccgtcgccgccgagc 166 ||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 91474 tcctcaacctcttcgccttcctcctcgccgtcggcgccgagc 91433
>dbj|AK068711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160C06, full insert sequence Length = 1042 Score = 52.0 bits (26), Expect = 8e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 125 tcctcaacctcatcgccttcggcctcgccgtcgccgccgagc 166 ||||||||||| |||||||| ||||||||||| |||||||| Sbjct: 164 tcctcaacctcttcgccttcctcctcgccgtcggcgccgagc 205
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 cgccgtcgccgccgagcagcgcc 172 ||||||||||||||||||||||| Sbjct: 4517028 cgccgtcgccgccgagcagcgcc 4517050 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cctcgccgtcgccgccgagc 166 |||||||||||||||||||| Sbjct: 2912152 cctcgccgtcgccgccgagc 2912171 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 cgccgtcgccgccgagcagc 169 |||||||||||||||||||| Sbjct: 420371 cgccgtcgccgccgagcagc 420352
>gb|AF442967.1| Triticum aestivum clone WAS-3a thaumatin-like protein mRNA, complete cds Length = 925 Score = 46.1 bits (23), Expect = 0.047 Identities = 32/35 (91%) Strand = Plus / Plus Query: 125 tcctcaacctcatcgccttcggcctcgccgtcgcc 159 ||||| ||||||||||| ||| ||||||||||||| Sbjct: 83 tcctccacctcatcgccctcgtcctcgccgtcgcc 117
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Minus Query: 135 catcgccttcggcctcgccgtcg 157 ||||||||||||||||||||||| Sbjct: 182557 catcgccttcggcctcgccgtcg 182535 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tcatcgccttcggcctcgcc 153 |||||||||||||||||||| Sbjct: 2606524 tcatcgccttcggcctcgcc 2606543
>ref|XM_480361.1| Oryza sativa (japonica cultivar-group), mRNA Length = 828 Score = 44.1 bits (22), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 115 tccgccctgctcctcaacctcatcgccttc 144 |||||||| |||||||||||| |||||||| Sbjct: 206 tccgccctcctcctcaacctcctcgccttc 177
>ref|XM_471043.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 131 acctcatcgccttcggcctcgccgtc 156 ||||| |||||||||||||||||||| Sbjct: 1025 acctcgtcgccttcggcctcgccgtc 1050
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 atcgccttcggcctcgccgtcgccgc 161 ||||||||| |||||||||||||||| Sbjct: 32102 atcgccttcagcctcgccgtcgccgc 32127
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 atcgccttcggcctcgccgtcgccgc 161 ||||||||| |||||||||||||||| Sbjct: 107287 atcgccttcagcctcgccgtcgccgc 107312
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 gccgtcgccgccgagcagcgcc 172 |||||||||||||||||||||| Sbjct: 267418 gccgtcgccgccgagcagcgcc 267439
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 ccgtcgccgccgagcagcgccg 173 |||||||||||||||||||||| Sbjct: 3068362 ccgtcgccgccgagcagcgccg 3068383
>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03, complete sequence Length = 140948 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 131 acctcatcgccttcggcctcgccgtc 156 ||||| |||||||||||||||||||| Sbjct: 65140 acctcgtcgccttcggcctcgccgtc 65165
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 atcgccttcggcctcgccgtcgccgc 161 ||||||||| |||||||||||||||| Sbjct: 131790 atcgccttcagcctcgccgtcgccgc 131815
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 tcgccgtcgccgccgagcagcg 170 |||||||||||||||||||||| Sbjct: 906888 tcgccgtcgccgccgagcagcg 906867 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 cgccgtcgccgccgagcagc 169 |||||||||||||||||||| Sbjct: 714449 cgccgtcgccgccgagcagc 714430
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 131 acctcatcgccttcggcctcgccgtc 156 ||||| |||||||||||||||||||| Sbjct: 985421 acctcgtcgccttcggcctcgccgtc 985446
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 atcgccttcggcctcgccgtcgccgc 161 ||||||||| |||||||||||||||| Sbjct: 27100706 atcgccttcagcctcgccgtcgccgc 27100731 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cggcctcgccgtcgccgccg 163 |||||||||||||||||||| Sbjct: 19088736 cggcctcgccgtcgccgccg 19088717
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_C08 Length = 150300 Score = 44.1 bits (22), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 115 tccgccctgctcctcaacctcatcgccttc 144 |||||||| |||||||||||| |||||||| Sbjct: 113487 tccgccctcctcctcaacctcctcgccttc 113458
>dbj|AP004590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577G06 Length = 58137 Score = 44.1 bits (22), Expect = 0.18 Identities = 28/30 (93%) Strand = Plus / Minus Query: 115 tccgccctgctcctcaacctcatcgccttc 144 |||||||| |||||||||||| |||||||| Sbjct: 4144 tccgccctcctcctcaacctcctcgccttc 4115
>dbj|AK119922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G08, full insert sequence Length = 1580 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 131 acctcatcgccttcggcctcgccgtc 156 ||||| |||||||||||||||||||| Sbjct: 1020 acctcgtcgccttcggcctcgccgtc 1045
>dbj|AK072364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058A03, full insert sequence Length = 4127 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 atcgccttcggcctcgccgtcgccgc 161 ||||||||| |||||||||||||||| Sbjct: 413 atcgccttcagcctcgccgtcgccgc 438
>gb|AY106198.1| Zea mays PCO097929 mRNA sequence Length = 695 Score = 44.1 bits (22), Expect = 0.18 Identities = 34/38 (89%) Strand = Plus / Plus Query: 138 cgccttcggcctcgccgtcgccgccgagcagcgccgca 175 |||||| ||| |||||||||||||||||| ||||||| Sbjct: 149 cgcctttggcttcgccgtcgccgccgagcgccgccgca 186
>ref|XM_483613.1| Oryza sativa (japonica cultivar-group), mRNA Length = 592 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 220 tcggcctcgccgtcgccgccg 200
>ref|XM_470903.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1623 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 461 tcggcctcgccgtcgccgccg 481
>ref|XM_468502.1| Oryza sativa (japonica cultivar-group), mRNA Length = 933 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 tccgccctgctcctcaacctcatcgccttcggc 147 |||||| |||||||| |||||||||||||||| Sbjct: 112 tccgccttgctcctcgccctcatcgccttcggc 144
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cgccgtcgccgccgagcagcgccgc 174 ||||| ||||||||||||||||||| Sbjct: 333903 cgccgccgccgccgagcagcgccgc 333927
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 16272187 tcggcctcgccgtcgccgccg 16272207
>emb|Z11929.1|SCMETALLO S.coelicolor genes for metalloproteinase and LysR-type transcriptional activator Length = 4673 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 2579 tcggcctcgccgtcgccgccg 2559
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cgccgtcgccgccgagcagcgccgc 174 ||||| ||||||||||||||||||| Sbjct: 1652996 cgccgccgccgccgagcagcgccgc 1653020
>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete sequence Length = 135585 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 70203 tcggcctcgccgtcgccgccg 70223
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cgccgtcgccgccgagcagcgccgc 174 ||||| ||||||||||||||||||| Sbjct: 1103423 cgccgccgccgccgagcagcgccgc 1103447
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 16265820 tcggcctcgccgtcgccgccg 16265840
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 tccgccctgctcctcaacctcatcgccttcggc 147 |||||| |||||||| |||||||||||||||| Sbjct: 35564217 tccgccttgctcctcgccctcatcgccttcggc 35564249 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 |||||||| ||||||||||| ||||||| Sbjct: 33241396 cctcgccggcgccgccgagccgcgccgc 33241369 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 132 cctcatcgccttcggcctcgccgtcgcc 159 |||||||| ||||||||||| ||||||| Sbjct: 30014612 cctcatcggcttcggcctcggcgtcgcc 30014639 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 26627267 ccttcggccccgccgtcgccgccg 26627244
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 42.1 bits (21), Expect = 0.73 Identities = 30/33 (90%) Strand = Plus / Plus Query: 115 tccgccctgctcctcaacctcatcgccttcggc 147 |||||| |||||||| |||||||||||||||| Sbjct: 80609 tccgccttgctcctcgccctcatcgccttcggc 80641
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 cggcctcgccgtcgccgccga 164 ||||||||||||||||||||| Sbjct: 8208784 cggcctcgccgtcgccgccga 8208764 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cctcgccgtcgccgccgagc 166 |||||||||||||||||||| Sbjct: 5516700 cctcgccgtcgccgccgagc 5516681
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0623F08 Length = 154540 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 108629 tcggcctcgccgtcgccgccg 108609
>dbj|AK109237.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F09, full insert sequence Length = 592 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 220 tcggcctcgccgtcgccgccg 200
>dbj|AK064220.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F12, full insert sequence Length = 1542 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccg 163 ||||||||||||||||||||| Sbjct: 91 tcggcctcgccgtcgccgccg 111
>ref|XM_483250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1974 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 ||||||||||||||||| ||| |||||| Sbjct: 918 cctcgccgtcgccgccgcgcaccgccgc 891
>ref|XM_468128.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1775 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 |||||||| ||||||||||| ||||||| Sbjct: 693 cctcgccggcgccgccgagccgcgccgc 720
>ref|XM_467533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1506 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 132 cctcatcgccttcggcctcgccgtcgcc 159 |||||||| ||||||||||| ||||||| Sbjct: 554 cctcatcggcttcggcctcggcgtcgcc 581
>ref|XM_467137.1| Oryza sativa (japonica cultivar-group), mRNA Length = 747 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 599 ccttcggccccgccgtcgccgccg 622
>ref|NM_186065.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 350 tcggccacgccgtcgccgccgagc 373
>ref|XM_479435.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1192 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 228 tcggccgcgccgtcgccgccgagc 251
>gb|AC132483.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0014C03, complete sequence Length = 143739 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cggcctcgccgtcgccgccg 163 |||||||||||||||||||| Sbjct: 101379 cggcctcgccgtcgccgccg 101360
>gb|AC008285.7| Drosophila melanogaster clone BACR31P16, complete sequence Length = 177084 Score = 40.1 bits (20), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 70 gagacngagtgagagagagcaat 92 ||||| ||||||||||||||||| Sbjct: 34626 gagacagagtgagagagagcaat 34648
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cggcctcgccgtcgccgccg 163 |||||||||||||||||||| Sbjct: 10634 cggcctcgccgtcgccgccg 10615
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 tcgccgtcgccgccgagcagcgcc 172 ||||| |||||||||||||||||| Sbjct: 3000564 tcgccatcgccgccgagcagcgcc 3000587
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 gccgtcgccgccgagcagcg 170 |||||||||||||||||||| Sbjct: 2937574 gccgtcgccgccgagcagcg 2937593
>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete sequence Length = 209619 Score = 40.1 bits (20), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 69 agagacngagtgagagagagcaa 91 |||||| |||||||||||||||| Sbjct: 59105 agagacagagtgagagagagcaa 59083
>gb|AC122430.4| Mus musculus BAC clone RP24-176F14 from chromosome 12, complete sequence Length = 172764 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 62 gaaacaaagagacngagtgagagagag 88 ||||||||||||| ||| ||||||||| Sbjct: 119109 gaaacaaagagacagagagagagagag 119135
>gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, complete sequence Length = 222288 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 62 gaaacaaagagacngagtgagagagag 88 ||||||||||||| ||| ||||||||| Sbjct: 220895 gaaacaaagagacagagagagagagag 220869
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence Length = 209280 Score = 40.1 bits (20), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 69 agagacngagtgagagagagcaa 91 |||||| |||||||||||||||| Sbjct: 128853 agagacagagtgagagagagcaa 128831
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cctcgccgtcgccgccgagc 166 |||||||||||||||||||| Sbjct: 3011239 cctcgccgtcgccgccgagc 3011258
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 tcgccgtcgccgccgagcagcgcc 172 ||||| |||||||||||||||||| Sbjct: 738060 tcgccatcgccgccgagcagcgcc 738037
>gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, complete sequence Length = 185908 Score = 40.1 bits (20), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 69 agagacngagtgagagagagcaa 91 |||||| |||||||||||||||| Sbjct: 94633 agagacagagtgagagagagcaa 94655
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 cgccgtcgccgccgagcagcgccg 173 ||||| |||||||||||||||||| Sbjct: 131257 cgccgccgccgccgagcagcgccg 131234
>gb|AC107072.3| Homo sapiens BAC clone RP11-359D14 from 4, complete sequence Length = 152824 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ctccacacctcattttcctc 39 |||||||||||||||||||| Sbjct: 150646 ctccacacctcattttcctc 150665
>gb|AE011877.1| Xanthomonas axonopodis pv. citri str. 306, section 255 of 469 of the complete genome Length = 12615 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 gccgtcgccgccgagcagcg 170 |||||||||||||||||||| Sbjct: 11338 gccgtcgccgccgagcagcg 11357
>gb|AE012337.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 245 of 460 of the complete genome Length = 11412 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 gccgtcgccgccgagcagcg 170 |||||||||||||||||||| Sbjct: 10149 gccgtcgccgccgagcagcg 10168
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cctcgccgtcgccgccgagc 166 |||||||||||||||||||| Sbjct: 485807 cctcgccgtcgccgccgagc 485826
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gccgtcgccgccgagcagcg 170 |||||||||||||||||||| Sbjct: 2205669 gccgtcgccgccgagcagcg 2205650
>gb|AC069476.25| Homo sapiens chromosome 11 clone b430h11 map 11, complete sequence Length = 184824 Score = 40.1 bits (20), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 62 gaaacaaagagacngagtgagagagag 88 |||| |||||||| ||||||||||||| Sbjct: 175753 gaaagaaagagacagagtgagagagag 175779
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 cgccgtcgccgccgagcagcgccg 173 ||||| |||||||||||||||||| Sbjct: 8556104 cgccgccgccgccgagcagcgccg 8556081
>gb|AC008135.12|AC008135 Drosophila melanogaster, chromosome 3R, region 98A-98A, BAC clone BACR27H07, complete sequence Length = 168306 Score = 40.1 bits (20), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 70 gagacngagtgagagagagcaat 92 ||||| ||||||||||||||||| Sbjct: 66433 gagacagagtgagagagagcaat 66455
>gb|AF546144.1|AF546144S1 Streptomyces cavourensis subsp. washingtonensis UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 9351 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 gccgtcgccgccgagcagcgccgc 174 ||||||| |||||||||||||||| Sbjct: 8620 gccgtcggcgccgagcagcgccgc 8597
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 155114 tcggccgcgccgtcgccgccgagc 155137
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 88228 tcggccacgccgtcgccgccgagc 88251 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 81090 tcggccgcgccgtcgccgccgagc 81113
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 169648 ccttcggccccgccgtcgccgccg 169625
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 61428 ccttcggccccgccgtcgccgccg 61405
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 132 cctcatcgccttcggcctcgccgtcgcc 159 |||||||| ||||||||||| ||||||| Sbjct: 114888 cctcatcggcttcggcctcggcgtcgcc 114915
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_D08 Length = 163702 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 |||||||| ||||||||||| ||||||| Sbjct: 70705 cctcgccggcgccgccgagccgcgccgc 70678
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0025J22 Length = 175355 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 ||||||||||||||||| ||| |||||| Sbjct: 110627 cctcgccgtcgccgccgcgcaccgccgc 110600
>dbj|AB114830.1| Oryza sativa (japonica cultivar-group) OsTIP2 mRNA for tonoplast intrinsic protein, complete cds Length = 1013 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 672 ccttcggccccgccgtcgccgccg 695
>dbj|AK109088.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H12, full insert sequence Length = 1193 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgccgagc 166 |||||| ||||||||||||||||| Sbjct: 228 tcggccgcgccgtcgccgccgagc 251
>dbj|AK105110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F08, full insert sequence Length = 1775 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 147 cctcgccgtcgccgccgagcagcgccgc 174 |||||||| ||||||||||| ||||||| Sbjct: 693 cctcgccggcgccgccgagccgcgccgc 720
>dbj|AK099373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063M10, full insert sequence Length = 666 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cgccgtcgccgccgagcagcgccg 173 ||||| |||||||||||||||||| Sbjct: 25 cgccgccgccgccgagcagcgccg 48
>dbj|AK070030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N07, full insert sequence Length = 1506 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 132 cctcatcgccttcggcctcgccgtcgcc 159 |||||||| ||||||||||| ||||||| Sbjct: 554 cctcatcggcttcggcctcggcgtcgcc 581
>dbj|AK064728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A10, full insert sequence Length = 873 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 474 ccttcggccccgccgtcgccgccg 497
>dbj|AK063884.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F11, full insert sequence Length = 720 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 cgccgtcgccgccgagcagcgccg 173 ||||| |||||||||||||||||| Sbjct: 43 cgccgccgccgccgagcagcgccg 66
>gb|AE003760.3| Drosophila melanogaster chromosome 3R, section 98 of 118 of the complete sequence Length = 197156 Score = 40.1 bits (20), Expect = 2.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 70 gagacngagtgagagagagcaat 92 ||||| ||||||||||||||||| Sbjct: 142245 gagacagagtgagagagagcaat 142267
>gb|AY954044.1| Leishmania tarentolae TRF4 (TRF4) gene, complete cds Length = 882 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gccgtcgccgccgagcagcg 170 |||||||||||||||||||| Sbjct: 192 gccgtcgccgccgagcagcg 173
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tcggcctcgccgtcgccgcc 162 |||||||||||||||||||| Sbjct: 251767 tcggcctcgccgtcgccgcc 251786
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 ccttcggcctcgccgtcgccgccg 163 ||||||||| |||||||||||||| Sbjct: 250567 ccttcggccccgccgtcgccgccg 250590
>gb|L43074.1|STMFABD Streptomyces glaucescens fabD, fabH, fabC, fabB, and ORF5 genes, complete cds Length = 4558 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtcgccgccgagcagcgccg 173 |||||||||||||||||||| Sbjct: 504 gtcgccgccgagcagcgccg 485 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,890,029 Number of Sequences: 3902068 Number of extensions: 1890029 Number of successful extensions: 189974 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 183308 Number of HSP's gapped (non-prelim): 6666 length of query: 226 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 204 effective length of database: 17,147,199,772 effective search space: 3498028753488 effective search space used: 3498028753488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
