>A115_TOBAC (P40691) Auxin-induced protein PCNT115|
          Length = 307

 Score =  122 bits (305), Expect = 3e-28
 Identities = 55/69 (79%), Positives = 62/69 (89%)
 Frame = +2

Query: 125 TVVPRVKLGSQGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYG 304
           T VPR+KLGSQG+EVSAQGLGCMGMSAFYGPPKPEPDM+ LIH A  +G+TLLD+  +YG
Sbjct: 6   TKVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYG 65

Query: 305 PHTNEILLG 331
           PHTNEILLG
Sbjct: 66  PHTNEILLG 74

>IN22_MAIZE (P49249) IN2-2 protein|
          Length = 306

 Score =  117 bits (292), Expect = 9e-27
 Identities = 56/75 (74%), Positives = 64/75 (85%)
 Frame = +2

Query: 107 MATAPVTVVPRVKLGSQGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLD 286
           MA A V+V PR+KLGSQG+EVSAQGLGCMGMSAFYGPPKPE +M+ LIH A  AGVT LD
Sbjct: 1   MAAALVSV-PRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLD 59

Query: 287 SXXIYGPHTNEILLG 331
           +  +YGPHTNE+LLG
Sbjct: 60  TSDVYGPHTNEVLLG 74

>YAKC_SCHPO (Q09923) Aldo-keto reductase yakc [NADP+] (EC 1.1.1.-)|
          Length = 340

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 27/67 (40%), Positives = 34/67 (50%)
 Frame = +2

Query: 131 VPRVKLGSQGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYGPH 310
           +P  K+G+    V A G GCMG+ A YGP   E +   L H A   G T  DS  +YG  
Sbjct: 3   IPTRKIGND--TVPAIGFGCMGLHAMYGPSSEEANQAVLTHAAD-LGCTFWDSSDMYGFG 59

Query: 311 TNEILLG 331
            NE  +G
Sbjct: 60  ANEECIG 66

>YDBC_ECOLI (P25906) Putative oxidoreductase ydbC (EC 1.-.-.-)|
          Length = 286

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 167 VSAQGLGCMGMSA--FYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYGPH-TNEIL 325
           V+  G G M ++    +GPP+     + ++  A A GV  +D+   YGPH TN+I+
Sbjct: 13  VNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQII 68

>PLD_MICLT (Q76KC2) Pyridoxal 4-dehydrogenase (EC 1.1.1.107)|
          Length = 341

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +2

Query: 146 LGSQGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYGPHTNEIL 325
           LG  G+ V+A GLG   +   Y P     D  AL+     +G+   DS  +YG    E L
Sbjct: 10  LGRTGLTVTALGLGTAPLGGLYAPVS-RADADALLEAGWDSGIRYFDSAPMYGYGRCEHL 68

Query: 326 LG 331
           LG
Sbjct: 69  LG 70

>YQKF_BACSU (P54569) Hypothetical oxidoreductase yqkF (EC 1.-.-.-)|
          Length = 306

 Score = 34.3 bits (77), Expect = 0.080
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +2

Query: 143 KLGSQGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYGPHTNEI 322
           KLG+  +++S  GLGCM +         +   ++++  A   G+  LD+  +Y    NE 
Sbjct: 5   KLGTSDLDISEVGLGCMSLGT------EKNKALSILDEAIELGINYLDTADLYDRGRNEE 58

Query: 323 LLG 331
           ++G
Sbjct: 59  IVG 61

>IOLS_BACSU (P46336) Protein iolS (EC 1.1.1.-) (Vegetative protein 147)|
           (VEG147) (AKR11A)
          Length = 310

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 137 RVKLGSQGMEVSAQGLG--CMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYGPH 310
           + KLG   ++V   GLG   +G    Y P   E     L+  A   GVT+LD+  IYG  
Sbjct: 3   KAKLGKSDLQVFPIGLGTNAVGGHNLY-PNLNEETGKELVREAIRNGVTMLDTAYIYGIG 61

Query: 311 TNEILLG 331
            +E L+G
Sbjct: 62  RSEELIG 68

>TDP2_MOUSE (Q64163) Transcription factor Dp-2 (E2F dimerization partner 2)|
           (Dp-3)
          Length = 446

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
 Frame = +2

Query: 59  DQNYSPDTSGSTTLTXM----ATAPVTVVPR------VKLGSQGMEVSAQGLGCMGMSAF 208
           DQN+SP + G+ +L         +P  ++P+      V +G Q +  + Q +   G    
Sbjct: 20  DQNFSP-SKGNISLVAFPVSSTNSPTKILPKTLGPINVNVGPQMIISTPQRIANSGSVLI 78

Query: 209 YGPPKPEPDMVALIHXAXAAG 271
             P  P P MV   H A AAG
Sbjct: 79  GNPYTPAPAMVTQTHIAEAAG 99

>GS69_BACSU (P80874) General stress protein 69 (EC 1.1.1.-) (GSP69) (AKR11B)|
          Length = 331

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 146 LGSQGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAGVTLLDSXXIYGPHTNEIL 325
           +   G+E S  GLG   +         E   +  I  A   G+TL+D+   YG   +E +
Sbjct: 6   IADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEI 65

Query: 326 LG 331
           +G
Sbjct: 66  VG 67

>PYY_LAMFL (P48098) Peptide YY-like precursor (PYY)|
          Length = 93

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 VVPRVKLGSQGMEVSAQGLGCMGMSAFYGPPKPE 229
           V PRV+L +  + V A  + C+GM A   PPKP+
Sbjct: 2   VSPRVRLAALALSVCA--ILCLGMHASAFPPKPD 33

>SIX5_HUMAN (Q8N196) Homeobox protein SIX5 (DM locus-associated homeodomain|
           protein)
          Length = 739

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
 Frame = +2

Query: 8   TWXASRTPSCSSFTSEPDQNYSPDTSG----------STTLTXMATAPV-TVVPRVKLGS 154
           T  A + P  ++ TS     +SPD+ G             +   A  PV +    +  G+
Sbjct: 616 TLSAQQPPPAAATTSSTSLPFSPDSPGLLPNFPAPPPEGLMLSPAAVPVWSAGLELSAGT 675

Query: 155 QGMEVSAQGLGCMGMSAFYGPPKPEPDMVALIHXAXAAG 271
           +G+  + +GLG          P P+P+   L+  A A G
Sbjct: 676 EGLLEAEKGLGTQAPHTMLRLPDPDPE--GLLLGATAGG 712

>PCDGD_PANTR (Q5DRB0) Protocadherin gamma B1 precursor (PCDH-gamma-B1)|
          Length = 927

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
 Frame = +2

Query: 29   PSCSSFTSEPDQNYS------PDTSGSTTLTXMATAP----------VTVVPRVKLGSQG 160
            PS SS  + P+ ++       P TSGS       T P            ++      + G
Sbjct: 798  PSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADG 857

Query: 161  MEVSAQGLGCMGMSAFYGP 217
                  G G MG+SA YGP
Sbjct: 858  SSTLGGGAGTMGLSARYGP 876

>PCDGD_HUMAN (Q9Y5G3) Protocadherin gamma B1 precursor (PCDH-gamma-B1)|
          Length = 927

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
 Frame = +2

Query: 29   PSCSSFTSEPDQNYS------PDTSGSTTLTXMATAP----------VTVVPRVKLGSQG 160
            PS SS  + P+ ++       P TSGS       T P            ++      + G
Sbjct: 798  PSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADG 857

Query: 161  MEVSAQGLGCMGMSAFYGP 217
                  G G MG+SA YGP
Sbjct: 858  SSTLGGGAGTMGLSARYGP 876

>COBS_MYCTU (Q10397) Cobalamin synthase (EC 2.-.-.-)|
          Length = 249

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 89  STTLTXMATAPVTVVPRVKLGSQGMEVSAQGLGCMGMSAFYGPPK 223
           S+ L+ M T  V +V    L   G+  +A GLGC      YGPP+
Sbjct: 58  SSPLSGMLTVAVLLVVTRGLHIDGVADTADGLGC------YGPPQ 96

>COBS_MYCBO (Q7VEN6) Cobalamin synthase (EC 2.-.-.-)|
          Length = 249

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 89  STTLTXMATAPVTVVPRVKLGSQGMEVSAQGLGCMGMSAFYGPPK 223
           S+ L+ M T  V +V    L   G+  +A GLGC      YGPP+
Sbjct: 58  SSPLSGMLTVAVLLVVTRGLHIDGVADTADGLGC------YGPPQ 96

>Y2320_MYCBO (P63485) Hypothetical protein Mb2320|
          Length = 323

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 245 LIHXAXAAGVTLLDSXXIYGPHTNEILLG 331
           ++  A A GVTL D+  IYG   +E +LG
Sbjct: 41  IVKRARALGVTLFDTAEIYGLGKSERILG 69

>Y2298_MYCTU (P63484) Hypothetical protein Rv2298/MT2355|
          Length = 323

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 245 LIHXAXAAGVTLLDSXXIYGPHTNEILLG 331
           ++  A A GVTL D+  IYG   +E +LG
Sbjct: 41  IVKRARALGVTLFDTAEIYGLGKSERILG 69

>PXDC1_MOUSE (Q91ZV7) Plexin domain-containing protein 1 precursor (Tumor|
           endothelial marker 7)
          Length = 500

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
 Frame = +2

Query: 38  SSFTSEPDQNYSPDTSGSTTLTXMATAPVTVVPRVKLGSQGMEVSAQGLGCMGMSAFYGP 217
           S +++ PD ++SP    STT + +    +T     KL          GL         GP
Sbjct: 364 SHYSASPDSSFSPFNGDSTTSSSLFIDSLTTEDDTKLNPY---AEGDGLPDHSSPKSKGP 420

Query: 218 PKPEPDMVALIHXAXAAGVTLLDSXXIYG-PHTNEIL 325
           P     +V ++         +L    I G P++N  L
Sbjct: 421 PVHLGTIVGIVLAVLLVAAIILAGIYISGHPNSNAAL 457

>PO2F1_XENLA (P16143) POU domain, class 2, transcription factor 1|
           (Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
           (NF-A1) (XOct1)
          Length = 760

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +2

Query: 26  TPSCSSFTSEPDQNYSPDTSGSTTLTXMATAPVTVVPRVKLGSQGMEVSAQGLGCMGMSA 205
           +PS SS  S    +    T+G T+ T   + P+T      L +  + V+A G+     +A
Sbjct: 540 SPSLSSSPSATAASSEASTAGETSTTQTTSTPMT----SSLNTGQVMVTASGIHTAAATA 595

Query: 206 FYGPPKPEPDMVALIHXAXAAGV 274
             G  +  P   +L   A AAG+
Sbjct: 596 LQGAAQ-LPTNASLAAMAAAAGL 617

>CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein)|
          Length = 529

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
 Frame = +2

Query: 17  ASRTPSCSSFTSEPDQNYSPDTSGST-------TLTXMATAPVTVVPRVKLGSQGMEVSA 175
           +SR PS SS +S     Y P  S S        T +  +++      ++ L   G + S+
Sbjct: 395 SSRVPSSSSISSSSGSPYHPCGSASQSPCSPPGTGSFSSSSSSQSSGKIILQPCGSKSSS 454

Query: 176 QGLGCMGMSAFY------GPPKPEPDMVALIHXAXAAG 271
            G  CM +S+        G P P+P   A    + +AG
Sbjct: 455 SGHPCMSVSSLTLTGGPDGSPHPDPSAGAKPCGSSSAG 492

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 83   SGSTTLTXMATAPVTVVPRVKLGSQGMEVSAQGLGCMGMSAFYGPPKPE 229
            +G T    +A  P    PR   G QG++  +   G  G+S   GPP P+
Sbjct: 950  AGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQ 998

>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = +2

Query: 17   ASRTPSCSSFTSEPDQNYSPDTSGSTTLTXMATAPVTVVPRVKLGSQ----GMEVSAQGL 184
            AS  P  S   + P  + SP T           AP T +P+  L SQ    G+   ++GL
Sbjct: 1237 ASTPPDSSRAWAAPGDS-SPSTRRIAVPMSTGAAPATAIPQASLVSQERSRGLSGPSKGL 1295

Query: 185  GCMGMSAFYGPPKPEPDMVALIHXAXAAG 271
            G   +      PK   D   L   A A+G
Sbjct: 1296 GTKELCI----PKSLKDGALLEDTAPASG 1320


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,289,221
Number of Sequences: 219361
Number of extensions: 560942
Number of successful extensions: 1997
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1993
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)