ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07d11 |
|---|---|
| Clone Library Name | barley_pub |
>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Multiubiquitin chain-binding protein) Length = 386 Score = 240 bits (612), Expect = 2e-63 Identities = 115/163 (70%), Positives = 134/163 (82%), Gaps = 1/163 (0%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 ICID+SEWMRNGDYSPSR QAQ +AVNL+CGA TQSNPENTVG++TMAGKGVRVL TPTS Sbjct: 8 ICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTS 67 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 DLGKILACMHGL+VG KHRQNK Q+QRIIVF GSP+KY+KK LE Sbjct: 68 DLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEI 127 Query: 361 IGKKLKKNNVALDVVDFGETDD-EXPEKLEALIAAVNSSDSSH 486 +GK+LKKN+V+LD+V+FGE DD E P+KLEAL+ AVN++D SH Sbjct: 128 VGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSH 170
>RPN10_SCHPO (O94444) 26S proteasome regulatory subunit rpn10| Length = 243 Score = 142 bits (357), Expect = 6e-34 Identities = 74/162 (45%), Positives = 97/162 (59%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 I ID+SEWM NGDY P+RF+AQ D V++I NPEN G+MT+ +VL T T Sbjct: 8 ILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR 67 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 D GK L+ MH L V KHR+NK Q+QRI+ F+GSP+ D+K L Sbjct: 68 DYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIR 127 Query: 361 IGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNSSDSSH 486 + K++KKNNVA+D++ GE +E L+ I A NSSDS H Sbjct: 128 LAKRMKKNNVAIDIIHIGELQNE--SALQHFIDAANSSDSCH 167
>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Rpn10) (Multiubiquitin chain-binding protein) (Antisecretory factor 1) (AF) (ASF) Length = 377 Score = 135 bits (341), Expect = 4e-32 Identities = 68/161 (42%), Positives = 102/161 (63%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 +C+D+SE+MRNGD+ P+R QAQ DAVN++C + T+SNPEN VG++T+A VL T T Sbjct: 8 VCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCEVLTTLTP 66 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 D G+IL+ +H ++ KHRQ K + RII F+GSPV+ ++K L Sbjct: 67 DTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVK 126 Query: 361 IGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNSSDSS 483 + K+LKK V +D+++FGE ++ EKL A + +N D + Sbjct: 127 LAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGT 166
>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Rpn10) (Multiubiquitin chain-binding protein) Length = 376 Score = 135 bits (341), Expect = 4e-32 Identities = 68/161 (42%), Positives = 102/161 (63%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 +C+D+SE+MRNGD+ P+R QAQ DAVN++C + T+SNPEN VG++T+A VL T T Sbjct: 8 VCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCEVLTTLTP 66 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 D G+IL+ +H ++ KHRQ K + RII F+GSPV+ ++K L Sbjct: 67 DTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVK 126 Query: 361 IGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNSSDSS 483 + K+LKK V +D+++FGE ++ EKL A + +N D + Sbjct: 127 LAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGT 166
>RPN10_YEAST (P38886) 26S proteasome regulatory subunit RPN10| Length = 268 Score = 132 bits (332), Expect = 5e-31 Identities = 72/164 (43%), Positives = 102/164 (62%), Gaps = 2/164 (1%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 + ID+SE+ RNGD+ +RF+AQ D+V I A SNPENTVG+++ AG RVL T T+ Sbjct: 8 LVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA 67 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 + GKILA +H ++ KHRQNK Q QRI+ F+ SP+ + L Sbjct: 68 EFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIR 127 Query: 361 IGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNS--SDSSH 486 + K LKKNNVA+D+++FGE ++ E L+ IAAVN+ ++SH Sbjct: 128 LAKTLKKNNVAVDIINFGEI-EQNTELLDEFIAAVNNPQEETSH 170
>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) Length = 420 Score = 122 bits (307), Expect = 4e-28 Identities = 64/161 (39%), Positives = 97/161 (60%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 I +D+S++MRNGD+ P+R QAQ DAV LIC + Q NPENT+G++++A VL T T+ Sbjct: 8 IAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTEVLCTLTN 65 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 D+ KI +H +E +HRQ + Q+ RI+ FIGSP+ D+K L Sbjct: 66 DVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTR 125 Query: 361 IGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNSSDSS 483 + K+LKK V +D+++FGE ++ +KL I +N D + Sbjct: 126 LAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGT 165
>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S| proteasome regulatory subunit S5A) (Multiubiquitin chain-binding protein) (54 kDa subunit of mu particle) (p54) Length = 396 Score = 121 bits (303), Expect = 1e-27 Identities = 65/161 (40%), Positives = 93/161 (57%) Frame = +1 Query: 1 ICIDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 IC D+S++ RNGDY P+R Q D +NL+C +SNPEN VG+MT++ V VL T TS Sbjct: 8 ICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTS 66 Query: 181 DLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKYDKKVLET 360 D G+I + MH ++ KHRQ K + RI+VF+GSP+ +++ L Sbjct: 67 DAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVK 126 Query: 361 IGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNSSDSS 483 K+LKK V +D+V FG+ + E L A I A+N D + Sbjct: 127 QAKRLKKEKVNVDIVSFGDHGNNN-EILTAFINALNGKDGT 166
>GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 507 Score = 38.5 bits (88), Expect = 0.010 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 10/69 (14%) Frame = +3 Query: 24 DAERRLLAVPLPGAGRRRQ---PHLRRXDPVEPGEYGGRHDDG----RQGRARAC-HPHQ 179 DA + AV LP R R PHLR + G++GGRHD G R R C HPH Sbjct: 437 DAIWQAFAVLLPVQDRGRDGGWPHLRIRLRLARGDFGGRHDGGFLPLRHEFPRQCGHPHH 496 Query: 180 R--PRQDPR 200 + PR PR Sbjct: 497 QRSPRHQPR 505
>YIBA_ECOLI (P0ADK6) Protein yibA| Length = 280 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +1 Query: 283 QNKRQQQRIIVFIGSPVKYDKKVLETIGKKLKKNNVALDVVD-FGETDDE 429 Q+K ++ RI IG + DK+VL + +LKKN V D+++ GE D+ Sbjct: 202 QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDK 251
>YIBA_ECO57 (P0ADK7) Protein yibA| Length = 280 Score = 35.0 bits (79), Expect = 0.11 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +1 Query: 283 QNKRQQQRIIVFIGSPVKYDKKVLETIGKKLKKNNVALDVVD-FGETDDE 429 Q+K ++ RI IG + DK+VL + +LKKN V D+++ GE D+ Sbjct: 202 QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDK 251
>ILVH_BUCBP (Q89AP8) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase small subunit) (ALS) Length = 159 Score = 33.5 bits (75), Expect = 0.31 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +1 Query: 340 DKKVLETIGKKLKKNNVALDVVDFGETDDEXPEKLEALIAAVNSS 474 DKKV+E IGK+L K +DV+ E +DE K E ++ +N++ Sbjct: 54 DKKVIEQIGKQLHK---LIDVLKVTEIEDEEHFKREIMLIKINNT 95
>LWA_ANTEL (Q16992) LWamide neuropeptides precursor [Contains: LWamide I;| Metamorphosin A (LWamide II) (MMA); LWamide III; LWamide IV; LWamide V; LWamide VI; LWamide VII; LWamide VIII; LWamide IX] Length = 514 Score = 32.0 bits (71), Expect = 0.91 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYAR-AGS 221 G+R+ P L R DP +PG +G R + G G R+ P Q RQ+P L+ R AGS Sbjct: 415 GKRQNPGLWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRSAGS 471 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 215 G+R+ P L R DP +PG +G R + G G R+ P Q RQ+P L+ R+ Sbjct: 394 GKRQNPGLWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 447 Score = 31.6 bits (70), Expect = 1.2 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 215 G+R+ P L R DP +PG +G R + G G R+ P Q RQ+P L+ R+ Sbjct: 291 GKRQNPGLWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 344 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 215 G+R+ P R DP +PG +G R + G G R+ P Q RQ+P L+ R+ Sbjct: 373 GKRQNPGFWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 426 Score = 29.3 bits (64), Expect = 5.9 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 215 G+R++ L R DP++PG +G R + G G R+ P Q RQ+P L+ R+ Sbjct: 249 GKRQKIGLWGRSADPLQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 302
>LWA_ANESU (Q17093) LWamide neuropeptides precursor [Contains: LWamide I;| LWamide II; Metamorphosin A (MMA); IWamide] (Fragment) Length = 126 Score = 30.4 bits (67), Expect = 2.7 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 12/65 (18%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQR----PRQDPRLYAR----- 212 G+R+QP L R DP + G +G R + G G R+ P Q RQ P L+ R Sbjct: 21 GKRQQPGLWGRSADPQQAGLWGKRQNPGLWG--RSADPQQAGLWGKRQHPGLWGRSADPQ 78 Query: 213 -AGSW 224 AG W Sbjct: 79 QAGLW 83
>POLN_BFV (P87515) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3 Length = 2410 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +1 Query: 7 IDHSEWMRNGDYSPSRFQAQADAVNLICGAXTQSNPENTVGVMTMAGK---GVRVLVTPT 177 +DH+ W D + + + + ++ G P N++ V T G G ++++P Sbjct: 504 LDHAAWPSIVDTTERHVEVEVEELDQRAGEGVVETPRNSIKVSTQIGDALIGSYLILSPQ 563 Query: 178 SDL-GKILACMHGL 216 + L + LAC+H L Sbjct: 564 AVLRSEKLACIHDL 577
>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1099 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Frame = -1 Query: 119 FSGFDWVXAPQMRLTASACA--WKRDGE 42 F+G D V P+MR T WKRDGE Sbjct: 916 FAGVDTVLGPEMRSTGEVMGLDWKRDGE 943
>MOBA_AQUAE (O67413) Probable molybdopterin-guanine dinucleotide biosynthesis| protein A Length = 201 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +1 Query: 337 YDKKVLETIGKKLKKNNVALDVV--DFGETDDEXPEKLEALIAAVNSSD 477 Y KK+LE I +++KK + + + D G + E PE+L + +N+ + Sbjct: 141 YSKKLLEKIEERIKKGDYRIWALLKDVGYNEVEIPEELRYTLLNMNTKE 189
>IMDH_LEIDO (P21620) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 514 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 82 LICGAXTQSNPENTVGVMTMAGKGVRVLVTPTS 180 LIC A T + PE+ V +A GV VLV +S Sbjct: 240 LICAAATSTRPEDKRRVAALADVGVDVLVLDSS 272
>LWA_ACTEQ (Q16998) LWamide neuropeptides precursor [Contains: LWamide I;| LWamide II; LWamide III; LWamide IV; LWamide V; LWamide VI; Metamorphosin A (MMA); MWamide] (Fragment) Length = 164 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%) Frame = +3 Query: 66 GRRRQPHL--RRXDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 215 G+R+ P L R +P +PG +G R + G G R+ P Q RQ+P L+ R+ Sbjct: 33 GKRQNPGLWGRSAEPGQPGLWGKRQNPGLWG--RSAEPLQPGLWGKRQNPGLWGRS 86
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 28.9 bits (63), Expect = 7.7 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Frame = +3 Query: 60 GAGRRRQPHLRRXDPV---EPGEYGGRHDDGRQGR--------ARACHPHQRPRQDPRLY 206 G RR+ H V EPG G H +GR+GR R HP P+ R+Y Sbjct: 209 GPRHRRERHPPTARDVLRGEPGHGDGHHLEGRRGRPRPQGREAGRGAHP---PQVRARIY 265 Query: 207 ARAG 218 AG Sbjct: 266 LAAG 269 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,361,151 Number of Sequences: 219361 Number of extensions: 1057376 Number of successful extensions: 4045 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4033 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
