ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C14AA_BACTS (Q45710) Pesticidal crystal protein cry14Aa (Insecti... 35 0.13
2VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous... 30 3.2
3CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptos... 29 5.4

>C14AA_BACTS (Q45710) Pesticidal crystal protein cry14Aa (Insecticidal|
            delta-endotoxin CryXIVA(a)) (Crystaline entomocidal
            protoxin) (132 kDa crystal protein)
          Length = 1186

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 204  GPYGLFSAADLSCAFGLADSTLNGTIQNHLWPQSPNLGARHPAVSTTIESQSSIYAAAGP 383
            GP  + + A ++C     D    G   +H +  S ++GA HP ++  IE    I  + G 
Sbjct: 885  GPLPITADASITCCAPEIDQCDGGQSDSHFFNYSIDVGALHPELNPGIEIGLKIVQSNGY 944

Query: 384  TSATNLSIXESQ 419
             + +NL I E +
Sbjct: 945  ITISNLEIIEER 956



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>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 266 PQWNHSESPVASVPEPRRAASRGLHDNRVAVVNLCSGGSHVSD 394
           P WNH+  P A  P   R A  GL D +V   +    G H+SD
Sbjct: 164 PPWNHALLPAAFYPAALRNALPGLFDAKVP--SSQRSGFHISD 204



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>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis|
           susceptibility protein homolog)
          Length = 972

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 293 VASVPEPRRAASRGLHDNR------VAVVNLCSGGSHVSDQSEHXREPSFRRHER 439
           ++ +PEPRR A R L D        +AV+ L +  + + +Q+ H    +F+ H R
Sbjct: 19  LSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPA-IDEQTRHAAAVNFKNHLR 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,906,178
Number of Sequences: 219361
Number of extensions: 554875
Number of successful extensions: 1855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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