ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07d09 |
|---|---|
| Clone Library Name | barley_pub |
>TSN31_MOUSE (Q9CQ88) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) Length = 210 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/62 (30%), Positives = 36/62 (58%) Frame = +2 Query: 164 RNMVAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 RN + L V+ +++ ++IG A+W + +++ +GG A FL+ +AG+VGA Sbjct: 10 RNALCALNVVYMLVGFLLIGVAAWGKG--LGVVSSIHIIGGVIAVGVFLLLIAVAGLVGA 67 Query: 344 AS 349 A+ Sbjct: 68 AN 69
>Y314_BUCAP (Q8K9M0) Hypothetical UPF0053 protein BUsg314| Length = 515 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = +2 Query: 122 PPNQEDISTMAGVGRNMVAPLLVLNLIMYVIVI 220 PPNQ D + + G+G ++ L +L+LI +V+ + Sbjct: 39 PPNQRDKARLIGLGLALIMRLALLSLISWVVTL 71
>Y323_BUCAI (P57408) Hypothetical UPF0053 protein BU323| Length = 521 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = +2 Query: 122 PPNQEDISTMAGVGRNMVAPLLVLNLIMYVIVI 220 PPNQ D + + G+G +V L +L+LI +++ + Sbjct: 39 PPNQRDKARLIGLGLALVMRLALLSLISWIVTL 71
>SPAT4_MOUSE (Q8K3V1) Spermatogenesis-associated protein 4 (Testis spermatocyte| apoptosis-related gene 2 protein) (Testis and spermatogenesis cell-related protein 2) (Spermatogenesis-related gene 2 protein) Length = 295 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -3 Query: 357 ASLDAAPTTPARMA--KTRK*KVAPLPPTPGRLVRPLMKWLR 238 +S + PT PA A K +K V P PP RL R +++WL+ Sbjct: 18 SSKTSLPTPPAVPAGKKPKKCLVYPHPPRSSRLSRSVLRWLQ 59
>Y080_MYCPN (P75613) Hypothetical protein MG064 homolog (R02_orf1386)| Length = 1386 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +2 Query: 173 VAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 +A LLV + +I++ + N G+ GV G L+F+++ G+VG+ Sbjct: 521 IAILLVAIFVTILILVSYLKKNTEQI--GILKANGVSGRKINLSLLIFSLIPGIVGS 575
>COX1_RHILE (Q08855) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 538 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = +2 Query: 305 FLVFAILAGVVGAASKLA 358 +L+FAI+AGV+GAA LA Sbjct: 39 YLIFAIIAGVIGAAMSLA 56
>TSN31_RAT (Q5U1V9) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) Length = 210 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = +2 Query: 164 RNMVAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 +N + L V+ +++ +++IG A+W + +++ +GG A FL+ +AG+VGA Sbjct: 10 KNALCALNVVYMLVGLLLIGVAAWGKG--LGVVSSIHIIGGVIAVGVFLLLIAVAGLVGA 67 Query: 344 AS 349 + Sbjct: 68 VN 69
>TSN31_PONPY (Q5RAP8) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) Length = 210 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = +2 Query: 164 RNMVAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 +N + L V+ +++ +++IG A+W + +++ +GG A FL+ +AG+VGA Sbjct: 10 KNALCALNVVYMLVSLLLIGVAAWGKG--LGLVSSIHIIGGVIAVGVFLLLIAVAGLVGA 67 Query: 344 AS 349 + Sbjct: 68 VN 69
>TSN31_HUMAN (Q12999) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence)| Length = 210 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = +2 Query: 164 RNMVAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 +N + L V+ +++ +++IG A+W + +++ +GG A FL+ +AG+VGA Sbjct: 10 KNALCALNVVYMLVSLLLIGVAAWGKG--LGLVSSIHIIGGVIAVGVFLLLIAVAGLVGA 67 Query: 344 AS 349 + Sbjct: 68 VN 69
>RL13_SCHPO (O74175) 60S ribosomal protein L13| Length = 208 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/72 (27%), Positives = 29/72 (40%) Frame = -3 Query: 384 RQVRTWCTPASLDAAPTTPARMAKTRK*KVAPLPPTPGRLVRPLMKWLRFQLANPMTMTY 205 R V+TW P R + R+ K A + P P +RP +K P T+ Y Sbjct: 20 RYVKTWFNQ------PGRKLRRRQARQTKAAKIAPRPVEAIRPAVK--------PPTIRY 65 Query: 204 MMRFSTSSGATM 169 M+ G T+ Sbjct: 66 NMKVRAGRGFTL 77
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 22 ASNQPPITT*FLPTQPS*FSAVSGRHRAPSRSIS 123 AS++PP+++ P PS S+ G H+ PS S++ Sbjct: 114 ASDEPPLSSQQQPPPPSSASSAHGGHQPPSESMN 147
>TS31A_XENLA (Q5XHG6) Tetraspanin-31 A (Tspan-31 A) (Sarcoma amplified sequence| homolog A) Length = 212 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/62 (27%), Positives = 35/62 (56%) Frame = +2 Query: 164 RNMVAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 +N + L V+ +++ +++IG A+W I +++ +GG A FL+ + G++GA Sbjct: 10 KNALCALNVVYMLVGLLLIGVAAWGKGFGI--VSSIHIIGGVIAIGVFLLLIAIIGLIGA 67 Query: 344 AS 349 S Sbjct: 68 VS 69
>TCTA_HUMAN (P57738) T-cell leukemia translocation-associated gene protein| Length = 103 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Frame = +2 Query: 182 LLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGG-NGAT 298 LL+L L++ ++ I A + + GL +RPG+GG NG+T Sbjct: 41 LLLLWLVLSLLGIQLAWGFYGNTVTGLYHRPGLGGQNGST 80
>TSN31_PIG (Q29257) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) (Fragment) Length = 109 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = +2 Query: 164 RNMVAPLLVLNLIMYVIVIGFASWNLNHFINGLTNRPGVGGNGATFYFLVFAILAGVVGA 343 +N + L V+ +++ +++IG A+W + +++ +GG A FL+ +AG+VGA Sbjct: 10 KNALCALNVVYMLVGLLLIGVAAWAKG--LGLVSSIHIIGGVIAVGVFLLLIAVAGLVGA 67 Query: 344 AS 349 + Sbjct: 68 VN 69
>MTS1_SALIN (P09795) Modification methylase SinI (EC 2.1.1.37)| (Cytosine-specific methyltransferase SinI) (M.SinI) Length = 461 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -3 Query: 423 TSEEDAEVARLSPRQVRTWCTPASLDA 343 T E A++ L+P++VRT C S+DA Sbjct: 8 TVTEAAQLLELTPQRVRTMCKQGSIDA 34
>COX1_BRAJA (P31833) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 541 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +2 Query: 305 FLVFAILAGVVGAASKLA 358 +L+FA++AGV+GAA +A Sbjct: 42 YLIFAVIAGVIGAAMSIA 59
>NORM_BURVI (Q9F5N7) Multidrug resistance protein norM (Multidrug-efflux| transporter) Length = 462 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 281 GGNGATFYFLVFAILAGVVGAASKLAGVHHVR 376 GG GA F+F++ +L GV+ + S V H R Sbjct: 59 GGLGANFFFVIVTVLQGVLSSVS--VSVAHAR 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,807,968 Number of Sequences: 219361 Number of extensions: 698739 Number of successful extensions: 2458 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2370 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2454 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
