Clone Name | bart07d09 |
---|---|
Clone Library Name | barley_pub |
>gb|AF218627.1|AF218627 Hordeum vulgare plasma membrane associated protein (pm19) mRNA, complete cds Length = 1000 Score = 440 bits (222), Expect = e-120 Identities = 267/282 (94%) Strand = Plus / Plus Query: 147 caatggctggcgtcggtcgtaacatggtggcgccgctgctggtgctgaacctcatcatgt 206 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct: 147 caatggcgggcgtcggtcgcaacatggtggcaccgctgctggtgctgaacctaatcatgt 206 Query: 207 acgtcatcgtcatcgggttcgcgagctggaacctcaaccacttcatcaacggcctcacca 266 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 207 acatcatcgtcatcgggttcgcgagctggaacctcaaccacttcatcaacggcatcacca 266 Query: 267 accgccccggcgtaggcggcaacggcgccaccttctacttcctcgtcttcgccatcctag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 267 accgccccggcgtaggcggcaacggcgccaccttctacttcctcgtcttcgccatccttg 326 Query: 327 ccggggtcgtcggcgcagcatccaagctcgccggcgtgcaccacgtgcgcacctggcgcg 386 |||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| | Sbjct: 327 ccggggtcgtcggcgcggcatccaagctcgccggagtgcaccacgtccgtacctggcgtg 386 Query: 387 gcgacagcctcgccacctccgcgtcctcttcgctggtggcct 428 | |||||||||||||||||||| || |||||||||||||||| Sbjct: 387 gggacagcctcgccacctccgcctcttcttcgctggtggcct 428
>gb|U80037.1|TAU80037 Triticum aestivum ABA induced plasma membrane protein PM-19 (WTABAPM) mRNA, complete cds Length = 1094 Score = 400 bits (202), Expect = e-108 Identities = 262/282 (92%) Strand = Plus / Plus Query: 147 caatggctggcgtcggtcgtaacatggtggcgccgctgctggtgctgaacctcatcatgt 206 ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 138 caatggcgggcgtgggtcgcaacatggtggcgccgctgctggtgctgaacctcatcatgt 197 Query: 207 acgtcatcgtcatcgggttcgcgagctggaacctcaaccacttcatcaacggcctcacca 266 || || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 198 acatcgtcgtcatcggcttcgccagctggaacctcaaccacttcatcaacggcctcacca 257 Query: 267 accgccccggcgtaggcggcaacggcgccaccttctacttcctcgtcttcgccatcctag 326 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 258 accgccccggcgtcggcggcaacggcgccaccttctacttcctcgtcttcgccatcctcg 317 Query: 327 ccggggtcgtcggcgcagcatccaagctcgccggcgtgcaccacgtgcgcacctggcgcg 386 |||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 318 ccggcgtagtcggcgccgcgtccaagctcgccggcgtgcaccacgtccgcacctggcgcg 377 Query: 387 gcgacagcctcgccacctccgcgtcctcttcgctggtggcct 428 | |||||||| ||||||||||| || || |||||||||||| Sbjct: 378 gggacagccttgccacctccgcctcgtcagcgctggtggcct 419
>gb|BT016404.1| Zea mays clone Contig237 mRNA sequence Length = 1259 Score = 248 bits (125), Expect = 1e-62 Identities = 209/237 (88%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 348 aacatggtggcgccgctcctggtgctcaacctcatcatgtacatcatcgtcatcggcttc 407 Query: 227 gcgagctggaacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggc 286 |||||||||||||| ||||||||||||||||| | |||||| ||||||||| | |||| Sbjct: 408 gcgagctggaacctgaaccacttcatcaacgggcagaccaactaccccggcgtggccggc 467 Query: 287 aacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagca 346 |||||||| || ||||||||||| || ||||||||||| ||||| || || ||||| || Sbjct: 468 aacggcgcgacgttctacttcctggtgttcgccatcctggccggcgtggtgggcgcggcg 527 Query: 347 tccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 |||||||| || |||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 528 tccaagctggcgggcgtgcaccacgtgcgcgcctggcgccacgacagcctggccacc 584
>gb|AY103744.1| Zea mays PCO126369 mRNA sequence Length = 1385 Score = 248 bits (125), Expect = 1e-62 Identities = 209/237 (88%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 329 aacatggtggcgccgctcctggtgctcaacctcatcatgtacatcatcgtcatcggcttc 388 Query: 227 gcgagctggaacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggc 286 |||||||||||||| ||||||||||||||||| | |||||| ||||||||| | |||| Sbjct: 389 gcgagctggaacctgaaccacttcatcaacgggcagaccaactaccccggcgtggccggc 448 Query: 287 aacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagca 346 |||||||| || ||||||||||| || ||||||||||| ||||| || || ||||| || Sbjct: 449 aacggcgcgacgttctacttcctggtgttcgccatcctggccggcgtggtgggcgcggcg 508 Query: 347 tccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 |||||||| || |||||||||||||||||| |||||||| ||||||||| |||||| Sbjct: 509 tccaagctggcgggcgtgcaccacgtgcgcgcctggcgccacgacagcctggccacc 565
>ref|XM_475170.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 522 Score = 232 bits (117), Expect = 7e-58 Identities = 198/225 (88%) Strand = Plus / Plus Query: 176 gcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttcgcgagctgg 235 |||||||||||||||||||| || ||||||||| | ||||| |||||||||||||||||| Sbjct: 28 gcgccgctgctggtgctgaatctgatcatgtacttgatcgtgatcgggttcgcgagctgg 87 Query: 236 aacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggcaacggcgcc 295 || |||||||||| |||||||||| ||||||| ||| || || | ||||||||||||| Sbjct: 88 aatctcaaccactacatcaacggcgagaccaaccacccgggggtcgccggcaacggcgcc 147 Query: 296 accttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagcatccaagctc 355 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 148 accttctacttcctcgtcttcgccatcctcgcgggggtggtcggcgccgcctccaagctc 207 Query: 356 gccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgcc 400 |||||||| |||||||| ||| ||||| ||| ||||||||||| Sbjct: 208 gccggcgtccaccacgtccgctcctggggcgcgcacagcctcgcc 252
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 232 bits (117), Expect = 7e-58 Identities = 198/225 (88%) Strand = Plus / Minus Query: 176 gcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttcgcgagctgg 235 |||||||||||||||||||| || ||||||||| | ||||| |||||||||||||||||| Sbjct: 79136 gcgccgctgctggtgctgaatctgatcatgtacttgatcgtgatcgggttcgcgagctgg 79077 Query: 236 aacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggcaacggcgcc 295 || |||||||||| |||||||||| ||||||| ||| || || | ||||||||||||| Sbjct: 79076 aatctcaaccactacatcaacggcgagaccaaccacccgggggtcgccggcaacggcgcc 79017 Query: 296 accttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagcatccaagctc 355 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 79016 accttctacttcctcgtcttcgccatcctcgcgggggtggtcggcgccgcctccaagctc 78957 Query: 356 gccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgcc 400 |||||||| |||||||| ||| ||||| ||| ||||||||||| Sbjct: 78956 gccggcgtccaccacgtccgctcctggggcgcgcacagcctcgcc 78912
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 232 bits (117), Expect = 7e-58 Identities = 198/225 (88%) Strand = Plus / Minus Query: 176 gcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttcgcgagctgg 235 |||||||||||||||||||| || ||||||||| | ||||| |||||||||||||||||| Sbjct: 18285924 gcgccgctgctggtgctgaatctgatcatgtacttgatcgtgatcgggttcgcgagctgg 18285865 Query: 236 aacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggcaacggcgcc 295 || |||||||||| |||||||||| ||||||| ||| || || | ||||||||||||| Sbjct: 18285864 aatctcaaccactacatcaacggcgagaccaaccacccgggggtcgccggcaacggcgcc 18285805 Query: 296 accttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagcatccaagctc 355 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 18285804 accttctacttcctcgtcttcgccatcctcgcgggggtggtcggcgccgcctccaagctc 18285745 Query: 356 gccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgcc 400 |||||||| |||||||| ||| ||||| ||| ||||||||||| Sbjct: 18285744 gccggcgtccaccacgtccgctcctggggcgcgcacagcctcgcc 18285700
>dbj|AK102039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081F22, full insert sequence Length = 859 Score = 232 bits (117), Expect = 7e-58 Identities = 198/225 (88%) Strand = Plus / Plus Query: 176 gcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttcgcgagctgg 235 |||||||||||||||||||| || ||||||||| | ||||| |||||||||||||||||| Sbjct: 115 gcgccgctgctggtgctgaatctgatcatgtacttgatcgtgatcgggttcgcgagctgg 174 Query: 236 aacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggcaacggcgcc 295 || |||||||||| |||||||||| ||||||| ||| || || | ||||||||||||| Sbjct: 175 aatctcaaccactacatcaacggcgagaccaaccacccgggggtcgccggcaacggcgcc 234 Query: 296 accttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagcatccaagctc 355 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 235 accttctacttcctcgtcttcgccatcctcgcgggggtggtcggcgccgcctccaagctc 294 Query: 356 gccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgcc 400 |||||||| |||||||| ||| ||||| ||| ||||||||||| Sbjct: 295 gccggcgtccaccacgtccgctcctggggcgcgcacagcctcgcc 339
>ref|XM_477728.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 224 bits (113), Expect = 2e-55 Identities = 206/237 (86%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 |||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 89 aacatgctggcgccgctcttggtgctcaacctcatcatgtacctcatcgtcatcggcttc 148 Query: 227 gcgagctggaacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggc 286 ||||||||||||||||||||||||||||| |||| |||||| ||| ||||| | ||| Sbjct: 149 gcgagctggaacctcaaccacttcatcaatggccagaccaactacccaggcgtggcgggc 208 Query: 287 aacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagca 346 |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| || Sbjct: 209 aacggcgcgacgttctacttcctggtgttcgccatcctggccggggtggtgggcgcggcg 268 Query: 347 tccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 |||||||| || ||||| |||||||||||| | |||||| |||||||||||||||| Sbjct: 269 tccaagctggcgggcgtccaccacgtgcgcgcgtggcgccacgacagcctcgccacc 325
>dbj|AK063592.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B01, full insert sequence Length = 904 Score = 224 bits (113), Expect = 2e-55 Identities = 206/237 (86%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 |||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 89 aacatgctggcgccgctcttggtgctcaacctcatcatgtacctcatcgtcatcggcttc 148 Query: 227 gcgagctggaacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggc 286 ||||||||||||||||||||||||||||| |||| |||||| ||| ||||| | ||| Sbjct: 149 gcgagctggaacctcaaccacttcatcaatggccagaccaactacccaggcgtggcgggc 208 Query: 287 aacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagca 346 |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| || Sbjct: 209 aacggcgcgacgttctacttcctggtgttcgccatcctggccggggtggtgggcgcggcg 268 Query: 347 tccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 |||||||| || ||||| |||||||||||| | |||||| |||||||||||||||| Sbjct: 269 tccaagctggcgggcgtccaccacgtgcgcgcgtggcgccacgacagcctcgccacc 325
>gb|U57639.1|OSU57639 Oryza sativa hydrophobic LEA-like protein mRNA, complete cds Length = 932 Score = 224 bits (113), Expect = 2e-55 Identities = 206/237 (86%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 |||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 90 aacatgctggcgccgctcttggtgctcaacctcatcatgtacctcatcgtcatcggcttc 149 Query: 227 gcgagctggaacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggc 286 ||||||||||||||||||||||||||||| |||| |||||| ||| ||||| | ||| Sbjct: 150 gcgagctggaacctcaaccacttcatcaatggccagaccaactacccaggcgtggcgggc 209 Query: 287 aacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgcagca 346 |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| || Sbjct: 210 aacggcgcgacgttctacttcctggtgttcgccatcctggccggggtggtgggcgcggcg 269 Query: 347 tccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 |||||||| || ||||| |||||||||||| | |||||| |||||||||||||||| Sbjct: 270 tccaagctggcgggcgtccaccacgtgcgcgcgtggcgccacgacagcctcgccacc 326
>gb|AF457943.1| Zea mays clone cho1c.pk003.d1, mRNA sequence Length = 504 Score = 194 bits (98), Expect = 2e-46 Identities = 147/164 (89%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 250 aacatggtggcgccgctcctggtgctcaacctcatcatgtacatcatcgtcatcggcttc 309 Query: 227 gcgagctggaacctcaaccacttcatcaacggcctcaccaaccgccccggcgtaggcggc 286 |||||||||||||| ||||||||||||||||| | |||||| ||||||||| | |||| Sbjct: 310 gcgagctggaacctgaaccacttcatcaacgggcagaccaactaccccggcgtggncggc 369 Query: 287 aacggcgccaccttctacttcctcgtcttcgccatcctagccgg 330 ||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 370 aacggngccacgttctacttcctggtgttcgccatcctggccgg 413
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 |||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 13554355 aacatgctggcgccgctcttggtgctcaacctcatcatgtacctcatcgtcatcggcttc 13554414 Query: 227 gcgagctggaacctcaaccacttcatcaacggcc 260 ||||||||||||||||||||||||||||| |||| Sbjct: 13554415 gcgagctggaacctcaaccacttcatcaatggcc 13554448 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Plus Query: 284 ggcaacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgca 343 ||||||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| Sbjct: 13554567 ggcaacggcgcgacgttctacttcctggtgttcgccatcctggccggggtggtgggcgcg 13554626 Query: 344 gcatccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 || |||||||| || ||||| |||||||||||| | |||||| |||||||||||||||| Sbjct: 13554627 gcgtccaagctggcgggcgtccaccacgtgcgcgcgtggcgccacgacagcctcgccacc 13554686
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1123E10 Length = 134641 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 |||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 134038 aacatgctggcgccgctcttggtgctcaacctcatcatgtacctcatcgtcatcggcttc 134097 Query: 227 gcgagctggaacctcaaccacttcatcaacggcc 260 ||||||||||||||||||||||||||||| |||| Sbjct: 134098 gcgagctggaacctcaaccacttcatcaatggcc 134131 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Plus Query: 284 ggcaacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgca 343 ||||||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| Sbjct: 134250 ggcaacggcgcgacgttctacttcctggtgttcgccatcctggccggggtggtgggcgcg 134309 Query: 344 gcatccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 || |||||||| || ||||| |||||||||||| | |||||| |||||||||||||||| Sbjct: 134310 gcgtccaagctggcgggcgtccaccacgtgcgcgcgtggcgccacgacagcctcgccacc 134369
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084P08 Length = 158656 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 167 aacatggtggcgccgctgctggtgctgaacctcatcatgtacgtcatcgtcatcgggttc 226 |||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||| ||| Sbjct: 21974 aacatgctggcgccgctcttggtgctcaacctcatcatgtacctcatcgtcatcggcttc 22033 Query: 227 gcgagctggaacctcaaccacttcatcaacggcc 260 ||||||||||||||||||||||||||||| |||| Sbjct: 22034 gcgagctggaacctcaaccacttcatcaatggcc 22067 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Plus Query: 284 ggcaacggcgccaccttctacttcctcgtcttcgccatcctagccggggtcgtcggcgca 343 ||||||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| Sbjct: 22186 ggcaacggcgcgacgttctacttcctggtgttcgccatcctggccggggtggtgggcgcg 22245 Query: 344 gcatccaagctcgccggcgtgcaccacgtgcgcacctggcgcggcgacagcctcgccacc 403 || |||||||| || ||||| |||||||||||| | |||||| |||||||||||||||| Sbjct: 22246 gcgtccaagctggcgggcgtccaccacgtgcgcgcgtggcgccacgacagcctcgccacc 22305
>ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0071K18.4), mRNA Length = 783 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 180 cgctgctggtgctgaacctcatcatgtacgtc 211 |||||||| ||||||||||| ||||||||||| Sbjct: 70 cgctgctgctgctgaacctcctcatgtacgtc 101
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 180 cgctgctggtgctgaacctcatcatgtacgtc 211 |||||||| ||||||||||| ||||||||||| Sbjct: 41772 cgctgctgctgctgaacctcctcatgtacgtc 41803
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 180 cgctgctggtgctgaacctcatcatgtacgtc 211 |||||||| ||||||||||| ||||||||||| Sbjct: 16618470 cgctgctgctgctgaacctcctcatgtacgtc 16618439
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 180 cgctgctggtgctgaacctcatcatgtacgtc 211 |||||||| ||||||||||| ||||||||||| Sbjct: 16626711 cgctgctgctgctgaacctcctcatgtacgtc 16626680
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 cgtcatcgtcatcgggttcgcg 229 |||||||||||||||||||||| Sbjct: 27532302 cgtcatcgtcatcgggttcgcg 27532323 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cttcctcgtcttcgccatcct 324 ||||||||||||||||||||| Sbjct: 26250647 cttcctcgtcttcgccatcct 26250667
>dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0032M14 Length = 146636 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 cgtcatcgtcatcgggttcgcg 229 |||||||||||||||||||||| Sbjct: 101860 cgtcatcgtcatcgggttcgcg 101881
>dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485A07 Length = 166397 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 cgtcatcgtcatcgggttcgcg 229 |||||||||||||||||||||| Sbjct: 151371 cgtcatcgtcatcgggttcgcg 151392
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 gtggcgccgctgctggtgctg 193 ||||||||||||||||||||| Sbjct: 324694 gtggcgccgctgctggtgctg 324674
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 gtggcgccgctgctggtgctg 193 ||||||||||||||||||||| Sbjct: 243559 gtggcgccgctgctggtgctg 243539
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gtggcgccgctgctggtgctg 193 ||||||||||||||||||||| Sbjct: 51180 gtggcgccgctgctggtgctg 51200
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 tggcgccgctgctggtgctga 194 ||||||||||||||||||||| Sbjct: 183088 tggcgccgctgctggtgctga 183068
>gb|AC103753.2| Homo sapiens chromosome 15, clone RP11-460N1, complete sequence Length = 179822 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 28 aatcaacctccaatcacaacttgatttct 56 |||||||||| || ||||||||||||||| Sbjct: 156263 aatcaacctcaaaacacaacttgatttct 156235
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ggcgccgctgctggtgctgaa 195 ||||||||||||||||||||| Sbjct: 3110590 ggcgccgctgctggtgctgaa 3110610
>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence Length = 271577 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tcggcgcagcatccaagctcg 356 ||||||||||||||||||||| Sbjct: 143673 tcggcgcagcatccaagctcg 143653
>gb|AE012508.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 416 of 460 of the complete genome Length = 11537 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gcacctggcgcggcgacagcc 395 ||||||||||||||||||||| Sbjct: 1695 gcacctggcgcggcgacagcc 1715
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gcacctggcgcggcgacagcc 395 ||||||||||||||||||||| Sbjct: 4671334 gcacctggcgcggcgacagcc 4671354
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cttcctcgtcttcgccatcct 324 ||||||||||||||||||||| Sbjct: 115187 cttcctcgtcttcgccatcct 115207
>dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069A19, full insert sequence Length = 2291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cttcctcgtcttcgccatcct 324 ||||||||||||||||||||| Sbjct: 1712 cttcctcgtcttcgccatcct 1732
>gb|AF168058.1| Chaetura pelagica cytochrome oxidase subunit 1 gene, partial cds; mitochondrial gene for mitochondrial product Length = 1449 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 310 cgtcttcgccatcctagccgg 330 ||||||||||||||||||||| Sbjct: 1125 cgtcttcgccatcctagccgg 1145
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 atatcaacaatggctggcgt 159 |||||||||||||||||||| Sbjct: 1189574 atatcaacaatggctggcgt 1189555
>gb|AC111090.20| Mus musculus chromosome 5, clone RP23-161K8, complete sequence Length = 204356 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ttctcagcagtgagtggcag 95 |||||||||||||||||||| Sbjct: 103539 ttctcagcagtgagtggcag 103558
>gb|AY301468.1| Graydidascalus brachyurus cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gtcttcgccatcctagccgg 330 |||||||||||||||||||| Sbjct: 445 gtcttcgccatcctagccgg 464
>gb|AY301465.1| Amazona xanthops cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gtcttcgccatcctagccgg 330 |||||||||||||||||||| Sbjct: 445 gtcttcgccatcctagccgg 464
>gb|AY301462.1| Amazona vinacea cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gtcttcgccatcctagccgg 330 |||||||||||||||||||| Sbjct: 445 gtcttcgccatcctagccgg 464
>gb|AY301444.1| Amazona festiva bodini cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gtcttcgccatcctagccgg 330 |||||||||||||||||||| Sbjct: 445 gtcttcgccatcctagccgg 464
>emb|AL357041.11| Human DNA sequence from clone RP11-221L2 on chromosome 1 Contains ESTs, STSs and GSSs, complete sequence Length = 130794 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 atcacaacttgatttcttcc 59 |||||||||||||||||||| Sbjct: 76545 atcacaacttgatttcttcc 76564
>ref|XM_780807.1| PREDICTED: Strongylocentrotus purpuratus similar to protein tyrosine phosphatase, receptor type, D isoform 3 precursor (LOC580769), mRNA Length = 3687 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tgtacgtcatcgtcatcggg 223 |||||||||||||||||||| Sbjct: 1493 tgtacgtcatcgtcatcggg 1512
>gb|AC162938.5| Mus musculus BAC clone RP23-104D6 from chromosome 9, complete sequence Length = 204657 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tgagtggcagacacagagct 105 |||||||||||||||||||| Sbjct: 34837 tgagtggcagacacagagct 34818
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ttcctcgtcttcgccatcct 324 |||||||||||||||||||| Sbjct: 3004331 ttcctcgtcttcgccatcct 3004312
>gb|AC113193.6| Homo sapiens chromosome 11, clone RP11-1026G19, complete sequence Length = 182208 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 tctcagcagtgagtggcaga 96 |||||||||||||||||||| Sbjct: 42453 tctcagcagtgagtggcaga 42434
>gb|AC091873.2| Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence Length = 166885 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cctagttagttctcagcagtgagt 90 ||||| |||||||||||||||||| Sbjct: 46096 cctagatagttctcagcagtgagt 46119
>gb|AC121099.8| Mus musculus chromosome 3, clone RP24-501F21, complete sequence Length = 157318 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cttcctcgtcttcgccatcc 323 |||||||||||||||||||| Sbjct: 83525 cttcctcgtcttcgccatcc 83544
>gb|AC138940.3| Homo sapiens chromosome 5 clone RP11-704G19, complete sequence Length = 182305 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cctagttagttctcagcagtgagt 90 ||||| |||||||||||||||||| Sbjct: 120484 cctagatagttctcagcagtgagt 120507
>gb|AC140171.3| Homo sapiens chromosome 5 clone RP11-804N13, complete sequence Length = 158091 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cctagttagttctcagcagtgagt 90 ||||| |||||||||||||||||| Sbjct: 5606 cctagatagttctcagcagtgagt 5629
>emb|X51479.1|KPCITP Klebsiella pneumoniae cit(+) gene for citrate carrier protein Length = 1723 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ggcgccgctgctggtgctga 194 |||||||||||||||||||| Sbjct: 554 ggcgccgctgctggtgctga 573
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ggcgccgctgctggtgctga 194 |||||||||||||||||||| Sbjct: 3296322 ggcgccgctgctggtgctga 3296341
>gb|AY626029.1| Desulfovibrio aminophilus strain DSM 12254 dissimilatory (bi)sulfite reductase alpha subunit (dsrA) and dissimilatory (bi)sulfite reductase beta subunit (dsrB) genes, partial sequence Length = 1943 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ccggcgtaggcggcaacggc 292 |||||||||||||||||||| Sbjct: 581 ccggcgtaggcggcaacggc 562
>gb|AC006500.4|AC006500 Homo sapiens, clone hRPK.31_A_1, complete sequence Length = 147699 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 atcacaacttgatttcttcc 59 |||||||||||||||||||| Sbjct: 29601 atcacaacttgatttcttcc 29582
>dbj|D28565.1|MUSCYP3A11 Mus musculus Cyp3a-11 gene, 5' flanking region Length = 1774 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ttctcagcagtgagtggcag 95 |||||||||||||||||||| Sbjct: 1124 ttctcagcagtgagtggcag 1143
>gb|AY849275.1| Linum usitatissimum clone LU17 microsatellite sequence Length = 494 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cttctacttcctcgtcttcg 317 |||||||||||||||||||| Sbjct: 473 cttctacttcctcgtcttcg 492 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,066,869 Number of Sequences: 3902068 Number of extensions: 3066869 Number of successful extensions: 73977 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73219 Number of HSP's gapped (non-prelim): 758 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)