ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart07d08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_449996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1306 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 88 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 147 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 148 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 207 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 208 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 267 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 268 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 327 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 328 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 387 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 388 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 444 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 445 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 489
>ref|XM_507424.1| PREDICTED Oryza sativa (japonica cultivar-group), P0646B04.12 mRNA Length = 1342 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 121 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 180 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 181 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 240 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 241 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 300 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 301 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 360 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 361 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 420 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 421 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 477 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 478 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 522
>ref|XM_507423.1| PREDICTED Oryza sativa (japonica cultivar-group), P0646B04.12 mRNA Length = 1346 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 121 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 180 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 181 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 240 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 241 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 300 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 301 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 360 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 361 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 420 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 421 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 477 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 478 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 522
>ref|XM_507422.1| PREDICTED Oryza sativa (japonica cultivar-group), P0646B04.12 mRNA Length = 1666 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 122 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 181 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 182 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 241 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 242 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 301 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 302 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 361 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 362 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 421 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 422 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 478 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 479 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 523
>ref|XM_506631.2| PREDICTED Oryza sativa (japonica cultivar-group), P0646B04.12 mRNA Length = 1347 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 164 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 223 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 224 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 283 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 284 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 343 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 344 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 403 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 404 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 463 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 464 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 520 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 521 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 565
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 873942 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 874001 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 874002 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 874061 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 874062 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 874121 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 874122 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 874181 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 874182 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 874241 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 874242 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 874298 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 874299 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 874343
>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0646B04 Length = 178896 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 38069 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 38128 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 38129 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 38188 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 38189 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 38248 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 38249 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 38308 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 38309 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 38368 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 38369 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 38425 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 38426 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 38470
>dbj|AK121793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095G14, full insert sequence Length = 1347 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 164 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 223 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 224 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 283 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 284 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 343 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 344 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 403 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 404 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 463 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 464 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 520 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 521 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 565
>dbj|AK068844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163O03, full insert sequence Length = 1666 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 122 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 181 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 182 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 241 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 242 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 301 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 302 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 361 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 362 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 421 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 422 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 478 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 479 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 523
>dbj|AK061402.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H09, full insert sequence Length = 1346 Score = 571 bits (288), Expect = e-160 Identities = 376/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 121 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 180 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 181 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 240 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 241 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 300 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 301 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 360 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 361 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 420 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 421 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 477 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 478 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 522
>dbj|AK120034.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B04, full insert sequence Length = 1342 Score = 563 bits (284), Expect = e-157 Identities = 375/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 121 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 180 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 181 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 240 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 241 gtccccaccgtcgccatcgacttcgtcgagatcgaggtcaactcctccgtcctcaacgac 300 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||| Sbjct: 301 gagttcatcgcccaccgcctcggcctcatccccctcacctccgccgccgccatggccatg 360 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 361 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 420 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 421 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 477 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 478 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 522
>dbj|AK103978.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H08, full insert sequence Length = 1306 Score = 563 bits (284), Expect = e-157 Identities = 375/405 (92%), Gaps = 3/405 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 88 tcgtaccagcggttcccgcgggtgcggatccgcgagctgaaggacgactacgccaagttc 147 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 148 gagctccgcgacaccgacgccagcatggccaacgccctccgccgcgtcatgatcgccgag 207 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 208 gtccccaccgtcgccatcgacctcgtcgagatcgaggtcaactcctccgtcctcaacgac 267 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||| Sbjct: 268 gagttcatcgcccaccgcctcggccccatccccctcacctccgccgccgccatggccatg 327 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 328 cgcttctcccgcgactgcgacgcctgcgacggcgacggctcctgcgagtactgctccgtc 387 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || Sbjct: 388 gagttccacctcgccgcccgcgccaccgactccgaccagaccctcgaggtcacct---cc 444 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgaccag 516 || ||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 445 aacgacctccgctccaccgaccccaaggtctgccccgtcgaccag 489
>gb|AY103726.1| Zea mays PCO100951 mRNA sequence Length = 2440 Score = 387 bits (195), Expect = e-104 Identities = 352/404 (87%), Gaps = 3/404 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 1227 tcgtaccagcgcttcccccgcgttcggatccgcgagctcaaggacgactacgccaagttc 1286 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 || ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 1287 gaactccgcgacaccgacgctagcatggccaacgccctccgccgcgtcatgatcgccgaa 1346 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 ||||| || ||||||||||| ||||| ||||||||| ||||||||||||||||||||| Sbjct: 1347 gtcccaactgtcgccatcgatctcgtagagatcgaggttaactcctccgtcctcaacgac 1406 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| ||||| || || |||||||||||||||||| ||| ||||||| ||| Sbjct: 1407 gagttcatcgcccaccgtctggggctcatcccgctcacctccgccgccgccatgcaaatg 1466 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||| || ||||||||||| || ||||| ||||||||||||||| ||||||||||| Sbjct: 1467 cgcttctctcgggactgcgacgcttgcgacggcgacggctcctgcgagtactgctccgtc 1526 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 ||||| |||||| | | | |||||||||||||| |||||||||||||||||| | || Sbjct: 1527 gagtttcacctctccgtgcacgccaccgactccgaccagacgctcgaggtcacat---cc 1583 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgacca 515 || ||||| | |||| |||||| |||||||||| |||||||| Sbjct: 1584 aacgacctgagatccatggaccccaaggtctgcccagtcgacca 1627
>gb|BT018972.1| Zea mays clone Contig383.F mRNA sequence Length = 1275 Score = 363 bits (183), Expect = 4e-97 Identities = 349/404 (86%), Gaps = 3/404 (0%) Strand = Plus / Plus Query: 112 tcgtaccagcgcttcccgcgcgtgcggatccgcgagctcaaggacgagtacgccaagttc 171 |||||||||||||| || ||||| |||||||||||||||||| |||| |||||||||||| Sbjct: 76 tcgtaccagcgctttccccgcgttcggatccgcgagctcaagtacgactacgccaagttc 135 Query: 172 gagctcaaggacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgag 231 || ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 136 gaactccgcgacaccgacgctagcatggccaacgccctccgccgcgtcatgatcgccgaa 195 Query: 232 gtccccaccgtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgac 291 ||||| || ||||||||||| ||||| ||||||||| ||||||||||||||||||||| Sbjct: 196 gtcccaactgtcgccatcgatctcgtagagatcgaggttaactcctccgtcctcaacgac 255 Query: 292 gagttcctcgcgcaccgcctcggcctcatcccgctcacctcctccggcgccatgtccatg 351 |||||| |||| ||||| || || |||||||||||||||||| ||| ||||||| ||| Sbjct: 256 gagttcatcgcccaccgtctggggctcatcccgctcacctccgccgccgccatgcaaatg 315 Query: 352 cgcttctcccgcgactgcgacgcctgtgacggggacggctcctgcgagcactgctccgtc 411 |||||||| || ||||||||||| || ||||| ||||||||||||||| ||||||||||| Sbjct: 316 cgcttctctcgggactgcgacgcttgcgacggcgacggctcctgcgagtactgctccgtc 375 Query: 412 gagttccacctcgctgcccgcgccaccgactccggccagacgctcgaggtcacctccacc 471 ||||| |||||| | | | |||||||||||| | |||||||||||||||||| | || Sbjct: 376 gagtttcacctctccgtgcacgccaccgactctgaccagacgctcgaggtcacat---cc 432 Query: 472 aaggacctccgctccaccgaccccnaggtctgccctgtcgacca 515 || ||||| | |||| |||||| |||||||||| |||||||| Sbjct: 433 aacgacctgagatccatggaccccaaggtctgcccagtcgacca 476
>gb|DQ122846.1| Medicago sativa clone NE5 DNA-directed RNA polymerase II third largest subunit mRNA, partial cds Length = 553 Score = 73.8 bits (37), Expect = 5e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 181 gacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgaggtccccacc 240 ||||||||||| ||| | |||||||| ||||| ||||| ||||| |||| ||||| ||| Sbjct: 68 gacaccgacgccagcgtcgccaacgcgctccggcgcgtgatgatttccgaagtcccaacc 127 Query: 241 gtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgacgagttcctc 300 ||||||||||||| || || ||||| ||||| ||||| || |||||||||||| || Sbjct: 128 atcgccatcgaccttgttgaaatcgaagtgaactcttccgttctgaacgacgagttcatc 187 Query: 301 gcgcaccgcctcggcctcatcccgctcac 329 || ||| | ||||| ||||| || ||||| Sbjct: 188 gctcacagactcggtctcattccactcac 216
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence Length = 128810 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 181 gacaccgacgcgagcatggccaacgccctccgtcgcgtcatgatcgccgaggtccccacc 240 ||||| ||||| ||| | |||||||| || || ||||| |||||| |||| ||||| ||| Sbjct: 95692 gacactgacgccagcgtcgccaacgcgctacggcgcgtgatgatctccgaagtcccaacc 95633 Query: 241 gtcgccatcgacctcgtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 |||||||||||||| || || ||||| ||||| ||||| ||||||||||||||| Sbjct: 95632 gtcgccatcgaccttgttgaaatcgaagtgaactcttccgttctcaacgacgagttc 95576
>ref|NM_127103.2| Arabidopsis thaliana RBP36A; DNA binding / DNA-directed RNA polymerase AT2G15430 (RBP36A) mRNA, complete cds Length = 1248 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||| |||||||| || || || Sbjct: 192 atggccaacgctctccgtcgcgtaatgatctccgaagtccctaccgtcgcaatagatcta 251 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||||| |||||| || || || || ||||||||||||||| Sbjct: 252 gtcgaaatcgaggttaattcatctgtactcaacgacgagttc 293
>ref|NM_127100.3| Arabidopsis thaliana RBP36B; DNA binding / DNA-directed RNA polymerase AT2G15400 (RBP36B) mRNA, complete cds Length = 1246 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||||||| | || ||| | ||| Sbjct: 183 atggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctc 242 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||| | |||||| || ||||| || ||||||||||||||| Sbjct: 243 gtcaaaatcgaggttaattcctctgttctcaacgacgagttc 284
>gb|AY096406.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II (At2g15430) mRNA, complete cds Length = 991 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||| |||||||| || || || Sbjct: 97 atggccaacgctctccgtcgcgtaatgatctccgaagtccctaccgtcgcaatagatcta 156 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||||| |||||| || || || || ||||||||||||||| Sbjct: 157 gtcgaaatcgaggttaattcatctgtactcaacgacgagttc 198
>gb|AY063965.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II third largest subunit (At2g15430) mRNA, complete cds Length = 1264 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||| |||||||| || || || Sbjct: 192 atggccaacgctctccgtcgcgtaatgatctccgaagtccctaccgtcgcaatagatcta 251 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||||| |||||| || || || || ||||||||||||||| Sbjct: 252 gtcgaaatcgaggttaattcatctgtactcaacgacgagttc 293
>gb|AC006920.11| Arabidopsis thaliana chromosome 2 clone F26H6 map mi398, complete sequence Length = 89301 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||||||| | || ||| | ||| Sbjct: 45113 atggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctc 45054 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||| | |||||| || ||||| || ||||||||||||||| Sbjct: 45053 gtcaaaatcgaggttaattcctctgttctcaacgacgagttc 45012 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||| |||||||| || || || Sbjct: 24474 atggccaacgctctccgtcgcgtaatgatctccgaagtccctaccgtcgcaatagatcta 24415 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||||| |||||| || || || || ||||||||||||||| Sbjct: 24414 gtcgaaatcgaggttaattcatctgtactcaacgacgagttc 24373
>gb|BT006072.1| Arabidopsis thaliana clone U20126 putative DNA-directed RNA polymerase II, third largest subunit (At2g15400) mRNA, complete cds Length = 991 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||||||| | || ||| | ||| Sbjct: 97 atggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctc 156 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||| | |||||| || ||||| || ||||||||||||||| Sbjct: 157 gtcaaaatcgaggttaattcctctgttctcaacgacgagttc 198
>emb|BX819183.1|CNS0A8X1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB54ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1191 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||||||| | || ||| | ||| Sbjct: 172 atggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctc 231 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||| | |||||| || ||||| || ||||||||||||||| Sbjct: 232 gtcaaaatcgaggttaattcctctgttctcaacgacgagttc 273
>gb|BT005715.1| Arabidopsis thaliana clone RAFL14-92-F19 (R20126) putative DNA-directed RNA polymerase II, third largest subunit (At2g15400) mRNA, complete cds Length = 1262 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||||||| | || ||| | ||| Sbjct: 183 atggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctc 242 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||| | |||||| || ||||| || ||||||||||||||| Sbjct: 243 gtcaaaatcgaggttaattcctctgttctcaacgacgagttc 284
>gb|L34770.1|ATHRPB3A Arabidopsis thaliana RNA polymerase II third largest subunit (RPB35.5A) gene, complete cds Length = 5031 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||| |||||||| || || || Sbjct: 2314 atggccaacgctctccgtcgcgtaatgatctccgaagtccctaccgtcgcaatagatcta 2373 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||||| |||||| || || || || ||||||||||||||| Sbjct: 2374 gtcgaaatcgaggttaattcatctgtactcaacgacgagttc 2415
>gb|L34771.1|ATHRPIT Arabidopsis thaliana RNA polymerase II third largest subunit gene, complete cds Length = 3764 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||||||| | || ||| | ||| Sbjct: 2296 atggccaacgctctccgtcgcgtaatgatctccgaagtccccaccatggcaatccatctc 2355 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||| | |||||| || ||||| || ||||||||||||||| Sbjct: 2356 gtcaaaatcgaggttaattcctctgttctcaacgacgagttc 2397
>gb|AY087783.1| Arabidopsis thaliana clone 3839 mRNA, complete sequence Length = 1240 Score = 60.0 bits (30), Expect = 8e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 196 atggccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctc 255 ||||||||||| ||||||||||| |||||| |||| ||||| || ||||| || || || Sbjct: 192 atggccaacgctctccgtcgcgtaatgatctccgaagtccctacggtcgcaatagatcta 251 Query: 256 gtcgagatcgagagcaactcctccgtcctcaacgacgagttc 297 ||||| |||||| || || || || ||||||||||||||| Sbjct: 252 gtcgaaatcgaggttaattcatctgtactcaacgacgagttc 293
>ref|XM_951871.1| Neurospora crassa OR74A probable DNA-directed RNA polymerase [MIPS] (NCU01515.1) partial mRNA Length = 1014 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 199 gccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctcgtc 258 |||||| |||| |||||||||||| | |||||| | ||||| | |||||||| || ||| Sbjct: 118 gccaactcccttcgtcgcgtcatgcttgccgagattcccacgattgccatcgatctagtc 177 Query: 259 gagatcgag 267 ||||||||| Sbjct: 178 gagatcgag 186
>ref|XM_327953.1| Neurospora crassa OR74A probable DNA-directed RNA polymerase [MIPS] (NCU01515.1) partial mRNA Length = 1014 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 199 gccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctcgtc 258 |||||| |||| |||||||||||| | |||||| | ||||| | |||||||| || ||| Sbjct: 118 gccaactcccttcgtcgcgtcatgcttgccgagattcccacgattgccatcgatctagtc 177 Query: 259 gagatcgag 267 ||||||||| Sbjct: 178 gagatcgag 186
>emb|AL670003.1|NCB9G16 Neurospora crassa DNA linkage group II BAC clone B9G16 Length = 69187 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 199 gccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctcgtc 258 |||||| |||| |||||||||||| | |||||| | ||||| | |||||||| || ||| Sbjct: 7946 gccaactcccttcgtcgcgtcatgcttgccgagattcccacgattgccatcgatctagtc 7887 Query: 259 gagatcgag 267 ||||||||| Sbjct: 7886 gagatcgag 7878
>emb|AL355932.1|NCB5O22 Neurospora crassa DNA linkage group II BAC clone B5O22 Length = 58349 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 199 gccaacgccctccgtcgcgtcatgatcgccgaggtccccaccgtcgccatcgacctcgtc 258 |||||| |||| |||||||||||| | |||||| | ||||| | |||||||| || ||| Sbjct: 15902 gccaactcccttcgtcgcgtcatgcttgccgagattcccacgattgccatcgatctagtc 15961 Query: 259 gagatcgag 267 ||||||||| Sbjct: 15962 gagatcgag 15970
>ref|XM_364439.1| Magnaporthe grisea 70-15 hypothetical protein (MG09284.4) partial mRNA Length = 1122 Score = 44.1 bits (22), Expect = 0.45 Identities = 31/34 (91%) Strand = Plus / Plus Query: 218 tcatgatcgccgaggtccccaccgtcgccatcga 251 |||||||||||||| ||||| || |||||||||| Sbjct: 248 tcatgatcgccgagatcccctccctcgccatcga 281
>ref|XM_750548.1| Aspergillus fumigatus Af293 RNA polymerase II subunit 3 (Afu2g13090) partial mRNA Length = 1179 Score = 44.1 bits (22), Expect = 0.45 Identities = 67/82 (81%) Strand = Plus / Plus Query: 247 atcgacctcgtcgagatcgagagcaactcctccgtcctcaacgacgagttcctcgcgcac 306 |||||||| |||||| |||| | ||| ||||||| ||| |||||| |||||||| ||| Sbjct: 322 atcgacctggtcgaggtcgaaaagaacacctccgtactccccgacgaattcctcgcccac 381 Query: 307 cgcctcggcctcatcccgctca 328 | || ||||||||||| |||| Sbjct: 382 agactgggcctcatcccactca 403
>gb|DQ214332.1| Taeniopygia guttata clone 0058P0016F05 DNA directed RNA polymerase II polypeptide C-like mRNA, complete sequence Length = 1328 Score = 42.1 bits (21), Expect = 1.8 Identities = 51/61 (83%) Strand = Plus / Plus Query: 270 caactcctccgtcctcaacgacgagttcctcgcgcaccgcctcggcctcatcccgctcac 329 |||||||||||| ||| |||| |||||| | || ||| | || || |||||||||||||| Sbjct: 277 caactcctccgtgctccacgatgagttcattgcacacaggctgggtctcatcccgctcac 336 Query: 330 c 330 | Sbjct: 337 c 337
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tcgcgcaccgcctcggcctc 318 |||||||||||||||||||| Sbjct: 3539114 tcgcgcaccgcctcggcctc 3539133
>ref|XM_481190.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 283 ctcaacgacgagttcctcgcgcaccgcctcggcctc 318 ||||||||||| ||||||||||| |||||||||| Sbjct: 88 ctcaacgacgacgtcctcgcgcacgtcctcggcctc 123
>gb|AC123618.26| Mus musculus chromosome 12, clone RP23-38N23, complete sequence Length = 201596 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 82408 cacctccaccaatgacctctgctccacc 82435
>ref|XM_360377.1| Magnaporthe grisea 70-15 predicted protein (MG05751.4) partial mRNA Length = 480 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgccaagttcgagctcaagg 181 |||||||||||||||||||| Sbjct: 306 cgccaagttcgagctcaagg 325
>ref|XM_602459.2| PREDICTED: Bos taurus similar to Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1, transcript variant 1 (LOC524139), mRNA Length = 1913 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1138 cacctccaccaatgacctctgctccacc 1165
>ref|XM_549017.2| PREDICTED: Canis familiaris similar to PHD finger protein 8, transcript variant 1 (LOC491897), mRNA Length = 3291 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tggagcgctctgcggcgggc 108 |||||||||||||||||||| Sbjct: 129 tggagcgctctgcggcgggc 110
>ref|XM_859448.1| PREDICTED: Canis familiaris similar to PHD finger protein 8, transcript variant 3 (LOC491897), mRNA Length = 3237 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tggagcgctctgcggcgggc 108 |||||||||||||||||||| Sbjct: 129 tggagcgctctgcggcgggc 110
>ref|XM_859430.1| PREDICTED: Canis familiaris similar to PHD finger protein 8, transcript variant 2 (LOC491897), mRNA Length = 2988 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tggagcgctctgcggcgggc 108 |||||||||||||||||||| Sbjct: 129 tggagcgctctgcggcgggc 110
>gb|AC002467.1| Homo sapiens BAC clone CTA-364P16 from 7, complete sequence Length = 97943 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 74373 cacctccaccaatgacctctgctccacc 74400
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tcgagctcaaggacaccgac 189 |||||||||||||||||||| Sbjct: 136353 tcgagctcaaggacaccgac 136372
>ref|XM_533946.2| PREDICTED: Canis familiaris similar to Jumonji domain containing protein 2B (LOC476741), mRNA Length = 3972 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 gctcctgcgagcactgctcc 408 |||||||||||||||||||| Sbjct: 2924 gctcctgcgagcactgctcc 2943
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 accagcgcttcccgcgcgtg 135 |||||||||||||||||||| Sbjct: 2030247 accagcgcttcccgcgcgtg 2030266
>ref|XM_540381.2| PREDICTED: Canis familiaris similar to Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 (LOC483262), mRNA Length = 1561 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1203 cacctccaccaatgacctctgctccacc 1230
>gb|AC146176.2| Pan troglodytes BAC clone RP43-24N3 from 7, complete sequence Length = 138742 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 100968 cacctccaccaatgacctctgctccacc 100941
>gb|BC027460.2| Homo sapiens Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1, mRNA (cDNA clone IMAGE:4538441), partial cds Length = 1885 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1110 cacctccaccaatgacctctgctccacc 1137
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cgtaccagcgcttcccgcgc 132 |||||||||||||||||||| Sbjct: 3693729 cgtaccagcgcttcccgcgc 3693748
>gb|BC019529.1| Mus musculus Casitas B-lineage lymphoma-like 1, mRNA (cDNA clone MGC:28616 IMAGE:4219836), complete cds Length = 1885 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1120 cacctccaccaatgacctctgctccacc 1147
>ref|NM_001038124.1| Bos taurus polymerase (RNA) I polypeptide C, 30kDa (POLR1C), mRNA Length = 1349 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 tcctcgcgcaccgcctcggcctcatccc 323 ||||||| |||||||| ||||||||||| Sbjct: 374 tcctcgcccaccgcctgggcctcatccc 401
>emb|CR623864.1| full-length cDNA clone CS0DC021YC08 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1266 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1111 cacctccaccaatgacctctgctccacc 1138
>gb|AE011809.1| Xanthomonas axonopodis pv. citri str. 306, section 187 of 469 of the complete genome Length = 14520 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 accagcgcttcccgcgcgtg 135 |||||||||||||||||||| Sbjct: 4903 accagcgcttcccgcgcgtg 4922
>gb|AE012277.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 185 of 460 of the complete genome Length = 11937 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 accagcgcttcccgcgcgtg 135 |||||||||||||||||||| Sbjct: 542 accagcgcttcccgcgcgtg 561
>gb|AF167441.1| Mus musculus E-cadherin binding protein E7 mRNA, complete cds Length = 1899 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1199 cacctccaccaatgacctctgctccacc 1226
>ref|NM_024814.1| Homo sapiens Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1 (CBLL1), mRNA Length = 1978 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1141 cacctccaccaatgacctctgctccacc 1168
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cgacgcctgtgacggggacg 388 |||||||||||||||||||| Sbjct: 5184863 cgacgcctgtgacggggacg 5184844
>gb|AY233208.1| Bos taurus RNA polymerase subunit I mRNA, partial cds Length = 750 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 tcctcgcgcaccgcctcggcctcatccc 323 ||||||| |||||||| ||||||||||| Sbjct: 155 tcctcgcccaccgcctgggcctcatccc 182
>dbj|AB168830.1| Macaca fascicularis testis cDNA, clone: QtsA-15158, similar to human Cas-Br-M (murine) ecotropic retroviral transformingsequence-like 1 (CBLL1), mRNA, RefSeq: NM_024814.1 Length = 2019 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1137 cacctccaccaatgacctctgctccacc 1164
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cctcgcgcaccgcctcggcc 316 |||||||||||||||||||| Sbjct: 598806 cctcgcgcaccgcctcggcc 598787
>dbj|AK051737.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130069F05 product:E-cadherin binding protein E7 mRNA, full insert sequence Length = 3482 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1138 cacctccaccaatgacctctgctccacc 1165
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 accagcgcttcccgcgcgtg 135 |||||||||||||||||||| Sbjct: 3004752 accagcgcttcccgcgcgtg 3004733
>gb|BC109803.1| Bos taurus cDNA clone MGC:134521 IMAGE:8042471, complete cds Length = 1349 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 tcctcgcgcaccgcctcggcctcatccc 323 ||||||| |||||||| ||||||||||| Sbjct: 374 tcctcgcccaccgcctgggcctcatccc 401
>dbj|AK049141.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330006O18 product:similar to E-CADHERIN BINDING PROTEIN E7 [Mus musculus], full insert sequence Length = 1587 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 943 cacctccaccaatgacctctgctccacc 970
>dbj|AK037706.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130039D08 product:similar to E-CADHERIN BINDING PROTEIN E7 [Mus musculus], full insert sequence Length = 2971 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 783 cacctccaccaatgacctctgctccacc 810
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgagttcctcgcgcaccgcc 310 |||||||||||||||||||| Sbjct: 456254 cgagttcctcgcgcaccgcc 456273
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 283 ctcaacgacgagttcctcgcgcaccgcctcggcctc 318 ||||||||||| ||||||||||| |||||||||| Sbjct: 10483877 ctcaacgacgacgtcctcgcgcacgtcctcggcctc 10483842
>ref|XM_234039.3| PREDICTED: Rattus norvegicus Casitas B-lineage lymphoma-like 1 (predicted) (Cbll1_predicted), mRNA Length = 2195 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1445 cacctccaccaatgacctctgctccacc 1472
>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0053M06 Length = 175416 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 283 ctcaacgacgagttcctcgcgcaccgcctcggcctc 318 ||||||||||| ||||||||||| |||||||||| Sbjct: 106468 ctcaacgacgacgtcctcgcgcacgtcctcggcctc 106433
>dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_B05 Length = 121853 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 283 ctcaacgacgagttcctcgcgcaccgcctcggcctc 318 ||||||||||| ||||||||||| |||||||||| Sbjct: 3345 ctcaacgacgacgtcctcgcgcacgtcctcggcctc 3310
>dbj|AK026762.1| Homo sapiens cDNA: FLJ23109 fis, clone LNG07754 Length = 1978 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1141 cacctccaccaatgacctctgctccacc 1168
>emb|CR974423.21| Mouse DNA sequence from clone RP23-182F9 on chromosome 12, complete sequence Length = 238441 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 35015 cacctccaccaatgacctctgctccacc 35042
>emb|AM181518.1| Microbacterium imperiale partial recA gene for recombinase A, type strain DSM 20530 Length = 636 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 cgccatcgacctcgtcgagatcga 266 ||||||||||||||||| |||||| Sbjct: 180 cgccatcgacctcgtcgtgatcga 203
>emb|AM181513.1| Microbacterium dextranolyticum partial recA gene for recombinase A, type strain DSM 8607 Length = 555 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 cgccatcgacctcgtcgagatcga 266 ||||||||||||||||| |||||| Sbjct: 198 cgccatcgacctcgtcgtgatcga 221
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tcctcgcgcaccgcctcggc 315 |||||||||||||||||||| Sbjct: 4924049 tcctcgcgcaccgcctcggc 4924068
>ref|NM_134048.1| Mus musculus Casitas B-lineage lymphoma-like 1 (Cbll1), mRNA Length = 1885 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 462 cacctccaccaaggacctccgctccacc 489 |||||||||||| |||||| |||||||| Sbjct: 1120 cacctccaccaatgacctctgctccacc 1147 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,920,589 Number of Sequences: 3902068 Number of extensions: 2920589 Number of successful extensions: 57613 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56616 Number of HSP's gapped (non-prelim): 975 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
