ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart07d07 |
|---|---|
| Clone Library Name | barley_pub |
>LYAM3_MOUSE (Q01102) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 768 Score = 37.0 bits (84), Expect = 0.033 Identities = 24/80 (30%), Positives = 30/80 (37%) Frame = +3 Query: 96 PCRSSRSHCQSLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWT 275 P + CQSLE P G MA +P+A +P S+T G G W Sbjct: 254 PPKCDAVQCQSLEAPPHGTMACMHPIAAFAYDSSCKFECQPGYRARGSNTLHCTGSGQW- 312 Query: 276 LWTRTSAPASSPTARWCRPP 335 S P + A C PP Sbjct: 313 -----SEPLPTCEAIACEPP 327
>RPOL_BPK11 (P18147) DNA-directed RNA polymerase (EC 2.7.7.6)| Length = 906 Score = 34.3 bits (77), Expect = 0.22 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 9/101 (8%) Frame = +2 Query: 167 PRGDDTTPP----APARVLGTVASRWRELHGENSWDGLLDPLDPHLRSSIISYGEMVQAA 334 P+G+D T A + +G W ++HG N P ++ + G ++ +A Sbjct: 457 PQGNDMTKGSLTLAKGKPIGLDGFYWLKIHGANCAGVDKVPFPERIKFIEENEGNILASA 516 Query: 335 YDGFN----TERRSPHCGACF-YAYXDLLAGVGVPHHGXNY 442 D N T++ SP C F + Y GV HHG NY Sbjct: 517 ADPLNNTWWTQQDSPFCFLAFCFEYA------GVKHHGLNY 551
>DIP2C_HUMAN (Q9Y2E4) Disco-interacting protein 2 homolog C| Length = 1556 Score = 32.3 bits (72), Expect = 0.82 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = +1 Query: 1 TTPASXQSQTLLAGSGRQHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPR 162 TT + S T GSG H + H+ H PPD T HS Q P+ Sbjct: 172 TTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQ 225
>Y4HP_RHISN (P50360) Hypothetical 61.7 kDa protein y4hP| Length = 552 Score = 31.6 bits (70), Expect = 1.4 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%) Frame = +2 Query: 119 LPIVGDIASRLHGQEKPRGDDTTPPAPARVLGTVASRWRELHGENSWDGLLDPL------ 280 +P+ I + + E+ GDDTT P AR T W + + + G P Sbjct: 247 MPVFDLIEAHVFAAERLHGDDTTIPIQARDKCTTGRIWTYVCDDRPFGGTAPPAAIYYAS 306 Query: 281 ----DPHLRSSIISYGEMVQA-AYDGF 346 H + + YG ++Q+ Y+GF Sbjct: 307 SDRRGEHPQKHLAGYGGILQSDCYNGF 333
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 30.8 bits (68), Expect = 2.4 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +3 Query: 102 RSSRSHCQS-LET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 278 RSS +HC+ L+ P G PVA +SS PA ++S A + +GS T Sbjct: 500 RSSFTHCRPPLDPEPPG--PPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTF 557 Query: 279 WTRTSAPASSPTARWCRPPTTG 344 + S S TA RPP G Sbjct: 558 KAQESGQGS--TAGPLRPPPPG 577
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.3 bits (64), Expect = 7.0 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +3 Query: 102 RSSRSHCQ-SLET*PAGCMAKRNPVATTXXXXXXXASSEPWPAGGASSTARTRGMGSWTL 278 RSS +HC+ +L+ P G +P A SS PA + S + + +GS T Sbjct: 500 RSSFTHCRPTLDPEPPG---PPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTF 556 Query: 279 WTRTSAPASSPTARWCRPPTTG 344 T+ S S TA RPP G Sbjct: 557 KTQESGQGS--TAVPLRPPPPG 576
>ARGD_SYNEL (P59322) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 412 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -1 Query: 346 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 215 +P+V G ++ D E V + +P P+V A+ L P G G Sbjct: 163 DPLVPGFAYVPYNDLGALEALVASLDQPQPQVAAILLEPLQGEG 206
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 52 QHIDREDPTN*HLARHVVPPDPTANRWRHSQQAAWPRETPWRRHD 186 +H D HL+RHV P D ++ R+ + + RRHD Sbjct: 448 RHDSHRDHERHHLSRHVRPSDEGESKCRYEAHSHTRHDEHTRRHD 492
>ARGD_ANASP (P54752) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 427 Score = 28.9 bits (63), Expect = 9.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -1 Query: 346 EPVVGGLHHLAVGDDAGAEVRVQRVQEPIPRVLAVELAPPAGHG 215 +P+V G H++ D + E + + E RV A+ + P G G Sbjct: 178 DPLVPGFHYVNYNDISAVEAAISELDEGDYRVAAILIEPLQGEG 221
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.9 bits (63), Expect = 9.1 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +3 Query: 36 RRQW*AAHRSRRSHELTPRAPCRSSR----SHCQSLET*PAGCMAKRNPVATTXXXXXXX 203 RR HR R S T + SS S S T A + P Sbjct: 149 RRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPP 208 Query: 204 ASSEPWP--------AGGAS-STARTRGMGSWTLWTRTSAPASSPTARWCRPP 335 + + PWP AG AS +T RTR SW+ + SA ++ R PP Sbjct: 209 SRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAAPTAMPRRSTSPP 261
>MYCL1_MOUSE (P10166) L-myc-1 proto-oncogene protein| Length = 368 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = +3 Query: 213 EPWPAGGASSTARTRGMGSWTLWTRTSAPASSPTARW 323 EPWP GGA A +RG W R A W Sbjct: 62 EPWPGGGAGDEAESRGHSK--AWGRNYASIIRRDCMW 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,275,396 Number of Sequences: 219361 Number of extensions: 1302091 Number of successful extensions: 4280 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4273 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
