ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07d06 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 106 bits (264), Expect = 5e-23 Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 7/148 (4%) Frame = +1 Query: 118 MASDG-DNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGD-----SVRRDEIV 279 MA D + RL+R+R+TVLQM+ DRGYLV DE L F +YGD R ++ Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60 Query: 280 IHCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEV- 456 I + DP D++ VFF +++K G+ +++ M++QN++ I+++Q ++ A+ + Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 457 SQSKKYRLEVFQEGELLVNITEHHLVPQ 540 + KY LE F E EL+VNITEH LVP+ Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPE 148
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 105 bits (261), Expect = 1e-22 Identities = 52/147 (35%), Positives = 90/147 (61%), Gaps = 6/147 (4%) Frame = +1 Query: 118 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDS-----VRRDEIVI 282 M + + RL+++R+T++Q+ DRGYLV DE +L EF ++GD RR ++ + Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60 Query: 283 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTE-VS 459 + DP D++ VFF +E K G+ ++ M+++N+T ++++Q+ ++ A+ V Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120 Query: 460 QSKKYRLEVFQEGELLVNITEHHLVPQ 540 + KY LE F + ELL+NITEH LVP+ Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPE 147
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 105 bits (261), Expect = 1e-22 Identities = 52/147 (35%), Positives = 90/147 (61%), Gaps = 6/147 (4%) Frame = +1 Query: 118 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDS-----VRRDEIVI 282 M + + RL+++R+T++Q+ DRGYLV DE +L EF ++GD RR ++ + Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60 Query: 283 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTE-VS 459 + DP D++ VFF +E K G+ ++ M+++N+T ++++Q+ ++ A+ V Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120 Query: 460 QSKKYRLEVFQEGELLVNITEHHLVPQ 540 + KY LE F + ELL+NITEH LVP+ Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPE 147
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 104 bits (260), Expect = 1e-22 Identities = 52/147 (35%), Positives = 90/147 (61%), Gaps = 6/147 (4%) Frame = +1 Query: 118 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDS-----VRRDEIVI 282 M + + RL+++R+T++Q+ DRGYLV DE +L EF ++GD RR ++ + Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTV 60 Query: 283 HCEKDGDPNDKVDVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTE-VS 459 + DP D++ VFF +E K G+ ++ M+++N+T ++++Q+ ++ A+ V Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120 Query: 460 QSKKYRLEVFQEGELLVNITEHHLVPQ 540 + KY LE F + ELL+NITEH LVP+ Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPE 147
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 81.3 bits (199), Expect = 2e-15 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Frame = +1 Query: 124 SDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGD 303 +D RL+R +TV +M+RDRGY + +E +SL EF R DS+ + + C + Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63 Query: 304 PNDKVDVF---------FLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEV 456 + ++ F F DE+ G+ +R+ + ++N + GI I Q +++ A + Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123 Query: 457 SQSKKYRLEVFQEGELLVNITEHHLVPQ 540 +E FQEG+L+VNIT H LVP+ Sbjct: 124 PTVSPASIETFQEGDLVVNITHHDLVPK 151
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 76.6 bits (187), Expect = 4e-14 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Frame = +1 Query: 142 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKVD 321 RL+R RTV +M+RDRGY + +E LSL +F +Y DS+ + + + + + ++ Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIE 70 Query: 322 VF---------FLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEVSQSKKY 474 F F DE+ G+ +++ V + ++N GI I Q ++ A + + Sbjct: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA 130 Query: 475 RLEVFQEGELLVNITEHHLVPQ 540 +E F E L+VNIT H LVP+ Sbjct: 131 VIETFPEASLVVNITHHELVPK 152
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 75.9 bits (185), Expect = 7e-14 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Frame = +1 Query: 142 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKVD 321 RL+R +TV +M+RDRGY + +E LSL +F +Y DS+ + + + + + ++ Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIE 70 Query: 322 VF---------FLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEVSQSKKY 474 F F DE+ G+ +++ V + ++N GI I Q ++ A + + Sbjct: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA 130 Query: 475 RLEVFQEGELLVNITEHHLVPQ 540 +E F E L+VNIT H LVP+ Sbjct: 131 VIETFPEASLVVNITHHELVPK 152
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 73.9 bits (180), Expect = 3e-13 Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Frame = +1 Query: 142 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGDPNDKVD 321 RL+R RTV +M++DRGY + +E +L L +F +Y DS+ R + + + + + Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESIS 70 Query: 322 VF---------FLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEVSQSKKY 474 F F DE G+ +++ V ++++N GI + Q ++ A V Sbjct: 71 KFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPA 130 Query: 475 RLEVFQEGELLVNITEHHLVPQ 540 +E F E L+VNIT H LVP+ Sbjct: 131 TIETFNEAALVVNITHHELVPK 152
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 73.9 bits (180), Expect = 3e-13 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 13/151 (8%) Frame = +1 Query: 127 DGDNKR----LFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEK 294 D DN+R L+R RTV +M+RDRGY + +E LSL +F +Y DS+ R + + + Sbjct: 2 DQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQ 61 Query: 295 DG--------DPN-DKVDVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPAR 447 PN V V F DE G+ +++ V + ++N GI I Q ++ A Sbjct: 62 SNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSAL 121 Query: 448 TEVSQSKKYRLEVFQEGELLVNITEHHLVPQ 540 + +E F E L+VNIT H LVP+ Sbjct: 122 KLLPSVAPATIETFNETALVVNITHHELVPK 152
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 71.6 bits (174), Expect = 1e-12 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 9/148 (6%) Frame = +1 Query: 124 SDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKDGD 303 +D RL+R RTV +M+RDRGY + +E L+L +F +Y DS+ R + + + Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64 Query: 304 PNDKVDVF---------FLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEV 456 + + F F DE G+ +++ V ++++ GI I Q ++ A V Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124 Query: 457 SQSKKYRLEVFQEGELLVNITEHHLVPQ 540 +E F E L+VNIT H LVP+ Sbjct: 125 PSIPPATIETFHEAALVVNITHHDLVPK 152
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 66.6 bits (161), Expect = 4e-11 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Frame = +1 Query: 142 RLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRY---GDSVRRDEIVIHCEKDGDPND 312 R+FR +T Q++ DRGY V E L+L +F + G ++ R + + + D N Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNK 69 Query: 313 -KVDVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALS-GPARTEVSQSKKYRLEV 486 + + F E G+ +R+ V + N GILI +++ A+ + + ++ +E Sbjct: 70 GTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIET 129 Query: 487 FQEGELLVNITEHHLVPQ 540 FQE +L+VNIT H LVP+ Sbjct: 130 FQESDLIVNITHHELVPK 147
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 63.9 bits (154), Expect = 3e-10 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 9/149 (6%) Frame = +1 Query: 118 MASDGDNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHCEKD 297 M+SD D ++L++V RT ++++DRGY + D E LS +FV D + + C Sbjct: 1 MSSD-DAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMA 59 Query: 298 GDPNDKVDVF---------FLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPART 450 + ++ F F +E+ + +R+ + + GIL+ + ++ A Sbjct: 60 SPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANR 119 Query: 451 EVSQSKKYRLEVFQEGELLVNITEHHLVP 537 + ++ FQE +LLVNIT+H LVP Sbjct: 120 LIPSVAPATIDTFQETDLLVNITKHVLVP 148
>RASF1_HUMAN (Q9NS23) Ras association domain-containing protein 1| Length = 344 Score = 33.1 bits (74), Expect = 0.51 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 4/119 (3%) Frame = +1 Query: 151 RVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRR----DEIVIHCEKDGDPNDKV 318 R R + +LR +LV DD K +L+E +R+G R DE + P+DK Sbjct: 225 RAREVIEALLRK--FLVVDDPRKFALFERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKA 282 Query: 319 DVFFLDESKTGLGVVRSCVDXMKQQNVTNGILILQKALSGPARTEVSQSKKYRLEVFQE 495 F L E+ +G D + N + ILQ+ R ++ Q Y + QE Sbjct: 283 LSFVLKENDSG----EVNWDAFSMPELHNFLRILQREEEEHLR-QILQKYSYCRQKIQE 336
>RASF1_MOUSE (Q99MK9) Ras association domain-containing protein 1 (Protein| 123F2) Length = 340 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +1 Query: 151 RVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQRYGDSVRR----DEIVIHCEKDGDPNDKV 318 R R + +LR ++V DD K +L+E +R+G R DE + P++K Sbjct: 221 RAREVIEALLRK--FMVVDDPRKFALFERTERHGQVYLRKLSDDEQPLKLRLLAGPSEKA 278 Query: 319 DVFFLDESKTG 351 F L E+ +G Sbjct: 279 LSFVLKENDSG 289
>BAS1_SPIOL (O24364) 2-cys peroxiredoxin BAS1, chloroplast precursor (EC| 1.11.1.15) (Thiol-specific antioxidant protein) Length = 265 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/62 (35%), Positives = 30/62 (48%) Frame = -2 Query: 389 CFIXSTQLLTTPKPVLDSSRKKTSTLSFGSPSFSQWMTISSRRTESPYRWTNSYRDSLXS 210 C ST L+++P SSR + S SPS S T+SS + R + R SL S Sbjct: 3 CVASSTTLISSP-----SSRVFPAKSSLSSPSVSFLRTLSSPSASASLRSGFARRSSLSS 57 Query: 209 SS 204 +S Sbjct: 58 TS 59
>EAF5_ASHGO (Q757R4) Chromatin modification-related protein EAF5| Length = 221 Score = 28.9 bits (63), Expect = 9.6 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Frame = +1 Query: 124 SDGD----NKRLFRVRRTVLQMLRD-RGYLVKDDEXKLSLYEFVQRYGDSVRRDEIVIHC 288 SDG N ++ +R T+L ++R+ + LVKD + Y+ ++ + D R E ++ Sbjct: 69 SDGQIIFYNLQIVEIRDTLLDVVRECQDTLVKDVKQLEQQYQAIKSHDDMKIRRERIMGM 128 Query: 289 EKDG--DPNDKVDVFFLDESKTGLG-VVRSCVDXMKQ-----QNVTNGILILQKALSGPA 444 +D F SK VVR +D + +N+++ ILQK ++ Sbjct: 129 YRDTILAKLQSFQHFHRLYSKLDPSPVVRDMMDLERIKATSIENLSHLQHILQKCVTDSV 188 Query: 445 RTEVSQSKKYRLEVFQEGEL 504 T + S +YR + +GEL Sbjct: 189 MTTKAGSDRYREIILSQGEL 208
>SYV_SULTO (Q972A3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 809 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/38 (26%), Positives = 24/38 (63%) Frame = +1 Query: 133 DNKRLFRVRRTVLQMLRDRGYLVKDDEXKLSLYEFVQR 246 D ++ R+ ++++L+++GYLVK + K ++ +R Sbjct: 321 DGLKIEEARKKIIELLKEKGYLVKIENFKHNVLSHTER 358 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,363,777 Number of Sequences: 219361 Number of extensions: 887754 Number of successful extensions: 3677 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3654 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
