ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106355.1| Zea mays PCO138189 mRNA sequence 70 8e-09
2ref|XM_472957.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
3dbj|AK100492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
4gb|AY105601.1| Zea mays PCO088367 mRNA sequence 58 3e-05
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
6dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
7dbj|AK103408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
8dbj|AK059963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
9ref|XM_754130.1| Ustilago maydis 521 hypothetical protein (UM030... 46 0.12
10dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
11dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
12dbj|AB159671.1| Streptomyces mobaraensis PTP-SM gene for prolyl ... 44 0.47
13ref|NM_186656.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
14emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
15gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence 42 1.9
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, comple... 42 1.9
19gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.9
20dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
21dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22dbj|AK111771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
23dbj|AK111745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
24dbj|AK099214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
25gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.9
26ref|XM_482330.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
27gb|BC085543.1| Danio rerio zgc:103525, mRNA (cDNA clone MGC:1035... 40 7.3
28ref|XM_550541.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
29ref|XM_414276.1| PREDICTED: Gallus gallus similar to semaphorin ... 40 7.3
30emb|CR691119.2|CNS0FW7V Tetraodon nigroviridis full-length cDNA 40 7.3
31emb|Z83851.17|HS989H11 Human DNA sequence from clone CTA-989H11 ... 40 7.3
32emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.3
33emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 7.3
34ref|NM_001007338.1| Danio rerio zgc:103525 (zgc:103525), mRNA 40 7.3
35gb|AC090589.9| Homo sapiens chromosome 11, clone RP11-390K5, com... 40 7.3
36ref|XM_695371.1| PREDICTED: Danio rerio similar to glycosyltrans... 40 7.3
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.3
41dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
43dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
44dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
46dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
47emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.3
48emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4,... 40 7.3
49emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4,... 40 7.3
50emb|CR450797.9| Zebrafish DNA sequence from clone CH211-80B12 in... 40 7.3
51gb|L24386.1|RHBHEMB Bradyrhizobium japonicum delta aminolevulini... 40 7.3 
>gb|AY106355.1| Zea mays PCO138189 mRNA sequence
          Length = 1078

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 467 agaagtaccgcctcgaggtcttccaggaaggggagcttcttgtgaacatta 517
           ||||||||| ||||||||||||||||||||  ||||||||||| |||||||
Sbjct: 493 agaagtaccacctcgaggtcttccaggaagctgagcttcttgtcaacatta 543
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>ref|XM_472957.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 618

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 467 agaagtaccgcctcgaggtcttccaggaaggggagcttcttgtgaacatta 517
           |||||| || |||||||||||||||||||| ||| || |||||||||||||
Sbjct: 353 agaagttccacctcgaggtcttccaggaagcggaactgcttgtgaacatta 403



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 142 cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 182
           ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 25  cggcttttccgcatccgccgcacggtgatgcagatgctgcg 65
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>dbj|AK100492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098I05, full
           insert sequence
          Length = 2658

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 467 agaagtaccgcctcgaggtcttccaggaaggggagcttcttgtgaacatta 517
           |||||| || |||||||||||||||||||| ||| || |||||||||||||
Sbjct: 437 agaagttccacctcgaggtcttccaggaagcggaactgcttgtgaacatta 487



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 142 cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 182
           ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 109 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 149
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>gb|AY105601.1| Zea mays PCO088367 mRNA sequence
          Length = 1112

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 157 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 201
           |||||||||||| ||||||||||||| ||||| || |||||||||
Sbjct: 201 cggcgcacggtgatgcagatgctgcgtgaccgtggctacctggtg 245
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 157      cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 201
                ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 34159470 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 34159426



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 102    cggaggcggagaagggatggcg 123
              ||||||||||||||||||||||
Sbjct: 388647 cggaggcggagaagggatggcg 388668
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>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 157    cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 201
              ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 155948 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 155904
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>dbj|AK103408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128E13, full
           insert sequence
          Length = 986

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 157 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 201
           ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 173 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 217
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>dbj|AK059963.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F07, full
           insert sequence
          Length = 950

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 157 cggcgcacggtgttgcagatgctgcgagaccgcgggtacctggtg 201
           ||||| |||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 131 cggcggacggtgatgcagatgctgcgggacagagggtacctggtg 175
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>ref|XM_754130.1| Ustilago maydis 521 hypothetical protein (UM03076.1) partial mRNA
          Length = 1932

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 310  gacaaggtcgacgtcttcttcctcgac 336
            ||||||||||||||| |||||||||||
Sbjct: 1750 gacaaggtcgacgtcatcttcctcgac 1776
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0005A05
          Length = 190834

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 102    cggaggcggagaagggatggcg 123
              ||||||||||||||||||||||
Sbjct: 140485 cggaggcggagaagggatggcg 140506
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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 102   cggaggcggagaagggatggcg 123
             ||||||||||||||||||||||
Sbjct: 28848 cggaggcggagaagggatggcg 28869
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>dbj|AB159671.1| Streptomyces mobaraensis PTP-SM gene for prolyl tripeptidyl
           peptidase, complete cds
          Length = 1434

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 258 cgtccgccgcgacgagatcgtc 279
           ||||||||||||||||||||||
Sbjct: 696 cgtccgccgcgacgagatcgtc 717
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>ref|NM_186656.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1848

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 42  catccgcgccggcgccgcctccccc 66
           |||||||||||||||||| ||||||
Sbjct: 645 catccgcgccggcgccgcgtccccc 669
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>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30,
             complete sequence
          Length = 141128

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 142   cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 182
             ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 46897 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 46857
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>gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence
          Length = 158921

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   tccaggaaggggagcttcttg 508
             |||||||||||||||||||||
Sbjct: 56685 tccaggaaggggagcttcttg 56665
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 142      cggctgttccgcgtgcggcgcacggtgttgcagatgctgcg 182
                ||||| |||||| | || ||||||||| |||||||||||||
Sbjct: 24330486 cggcttttccgcatccgccgcacggtgatgcagatgctgcg 24330446



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 48       cgccggcgccgcctccccccaccg 71
                ||||||||||||||||| ||||||
Sbjct: 16963898 cgccggcgccgcctcccgccaccg 16963875
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 42      catccgcgccggcgccgcctccccc 66
               |||||||||||||||||| ||||||
Sbjct: 6982733 catccgcgccggcgccgcgtccccc 6982757
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>gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, complete sequence
          Length = 167429

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    ccgcgccggcgccgcctcccc 65
             |||||||||||||||||||||
Sbjct: 11667 ccgcgccggcgccgcctcccc 11647
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 316     gtcgacgtcttcttcctcgac 336
               |||||||||||||||||||||
Sbjct: 2387166 gtcgacgtcttcttcctcgac 2387146
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>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0066H10
          Length = 200968

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 42   catccgcgccggcgccgcctccccc 66
            |||||||||||||||||| ||||||
Sbjct: 9422 catccgcgccggcgccgcgtccccc 9446
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>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0668C05
          Length = 142081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 42     catccgcgccggcgccgcctccccc 66
              |||||||||||||||||| ||||||
Sbjct: 106548 catccgcgccggcgccgcgtccccc 106572
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>dbj|AK111771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074H04, full
           insert sequence
          Length = 1562

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 42  catccgcgccggcgccgcctccccc 66
           |||||||||||||||||| ||||||
Sbjct: 346 catccgcgccggcgccgcgtccccc 370
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>dbj|AK111745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052H04, full
           insert sequence
          Length = 1993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 42  catccgcgccggcgccgcctccccc 66
           |||||||||||||||||| ||||||
Sbjct: 645 catccgcgccggcgccgcgtccccc 669
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>dbj|AK099214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079F16, full
           insert sequence
          Length = 1846

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 42  catccgcgccggcgccgcctccccc 66
           |||||||||||||||||| ||||||
Sbjct: 643 catccgcgccggcgccgcgtccccc 667
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 315     ggtcgacgtcttcttcctcga 335
               |||||||||||||||||||||
Sbjct: 1547638 ggtcgacgtcttcttcctcga 1547618
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>ref|XM_482330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cgccatccgcgccggcgccg 58
           ||||||||||||||||||||
Sbjct: 470 cgccatccgcgccggcgccg 451
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>gb|BC085543.1| Danio rerio zgc:103525, mRNA (cDNA clone MGC:103525 IMAGE:7239759),
           complete cds
          Length = 1470

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 gaagcagcagaacgtcacca 403
           ||||||||||||||||||||
Sbjct: 883 gaagcagcagaacgtcacca 902
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>ref|XM_550541.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 945

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  tccgcgccggcgccgcctcc 63
           ||||||||||||||||||||
Sbjct: 764 tccgcgccggcgccgcctcc 745
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>ref|XM_414276.1| PREDICTED: Gallus gallus similar to semaphorin 3D; collapsin 2
            (LOC415932), mRNA
          Length = 2082

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 308  acgacaaggtcgacgtcttcttcc 331
            ||||||||||| ||||||||||||
Sbjct: 1145 acgacaaggtctacgtcttcttcc 1168
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>emb|CR691119.2|CNS0FW7V Tetraodon nigroviridis full-length cDNA
          Length = 1249

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 480 cgaggtcttccaggaaggggagcttctt 507
           |||||||||||||| || ||||||||||
Sbjct: 275 cgaggtcttccaggcagtggagcttctt 302
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>emb|Z83851.17|HS989H11 Human DNA sequence from clone CTA-989H11 on chromosome 22q13.1-13.2,
             complete sequence
          Length = 118831

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   gtcttccaggaaggggagct 503
             ||||||||||||||||||||
Sbjct: 94723 gtcttccaggaaggggagct 94704
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     cgccatccgcgccggcgccg 58
              ||||||||||||||||||||
Sbjct: 202918 cgccatccgcgccggcgccg 202899
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>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   cgccatccgcgccggcgccg 58
            ||||||||||||||||||||
Sbjct: 1816 cgccatccgcgccggcgccg 1797
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>ref|NM_001007338.1| Danio rerio zgc:103525 (zgc:103525), mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 gaagcagcagaacgtcacca 403
           ||||||||||||||||||||
Sbjct: 883 gaagcagcagaacgtcacca 902
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>gb|AC090589.9| Homo sapiens chromosome 11, clone RP11-390K5, complete sequence
          Length = 190017

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gcgccggcgccgcctccccc 66
             ||||||||||||||||||||
Sbjct: 76582 gcgccggcgccgcctccccc 76601
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>ref|XM_695371.1| PREDICTED: Danio rerio similar to glycosyltransferase 8 domain
           containing 1 (LOC573902), partial mRNA
          Length = 520

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 gaagcagcagaacgtcacca 403
           ||||||||||||||||||||
Sbjct: 421 gaagcagcagaacgtcacca 440
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       cgccatccgcgccggcgccg 58
                ||||||||||||||||||||
Sbjct: 19483933 cgccatccgcgccggcgccg 19483952
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 44      tccgcgccggcgccgcctcc 63
               ||||||||||||||||||||
Sbjct: 1029330 tccgcgccggcgccgcctcc 1029349
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 44      tccgcgccggcgccgcctcc 63
               ||||||||||||||||||||
Sbjct: 7237312 tccgcgccggcgccgcctcc 7237293
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      cacgccatccgcgccggcgc 56
               ||||||||||||||||||||
Sbjct: 5583643 cacgccatccgcgccggcgc 5583624
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>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0660D08
          Length = 146915

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   tccgcgccggcgccgcctcc 63
            ||||||||||||||||||||
Sbjct: 5553 tccgcgccggcgccgcctcc 5572
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>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0062J13
          Length = 152837

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tccgcgccggcgccgcctcc 63
             ||||||||||||||||||||
Sbjct: 92203 tccgcgccggcgccgcctcc 92222
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>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0620H05
          Length = 161808

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tccgcgccggcgccgcctcc 63
              ||||||||||||||||||||
Sbjct: 137249 tccgcgccggcgccgcctcc 137230
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tccgcgccggcgccgcctcc 63
             ||||||||||||||||||||
Sbjct: 13120 tccgcgccggcgccgcctcc 13101
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>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0453D01
          Length = 147461

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    cgccatccgcgccggcgccg 58
             ||||||||||||||||||||
Sbjct: 78690 cgccatccgcgccggcgccg 78709
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>dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119L03, full
           insert sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cgccatccgcgccggcgccg 58
           ||||||||||||||||||||
Sbjct: 470 cgccatccgcgccggcgccg 451
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 315     ggtcgacgtcttcttcctcg 334
               ||||||||||||||||||||
Sbjct: 5437267 ggtcgacgtcttcttcctcg 5437286
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>emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06,
             complete sequence
          Length = 100589

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    cgccggcgccgcctccccccaccg 71
             ||||||||||||||||| ||||||
Sbjct: 87723 cgccggcgccgcctcccgccaccg 87700
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>emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0066J23,
             complete sequence
          Length = 156934

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    cgccggcgccgcctccccccaccg 71
             ||||||||||||||||| ||||||
Sbjct: 19154 cgccggcgccgcctcccgccaccg 19131
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>emb|CR450797.9| Zebrafish DNA sequence from clone CH211-80B12 in linkage group 11,
             complete sequence
          Length = 101488

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   gaagcagcagaacgtcacca 403
             ||||||||||||||||||||
Sbjct: 62144 gaagcagcagaacgtcacca 62125
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>gb|L24386.1|RHBHEMB Bradyrhizobium japonicum delta aminolevulinic acid dehydratase (hemB)
            gene, complete cds
          Length = 1242

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   cacgccatccgcgccggcgc 56
            ||||||||||||||||||||
Sbjct: 1146 cacgccatccgcgccggcgc 1127


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,483,242
Number of Sequences: 3902068
Number of extensions: 3483242
Number of successful extensions: 67105
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66336
Number of HSP's gapped (non-prelim): 769
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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