ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07d05 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 211 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = +2 Query: 53 MASDG-DNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 MA D + RL+R+R+ VLQM+ DRGYLV D+L L F Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETF 41
>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +2 Query: 53 MASDGDNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 M + + RL+++R+ ++Q+ DRGYLV D+L +L EF Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEF 40
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) Length = 210 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +2 Query: 53 MASDGDNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 M + + RL+++R+ ++Q+ DRGYLV D+L +L EF Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEF 40
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC| 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4) Length = 210 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +2 Query: 53 MASDGDNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 M + + RL+++R+ ++Q+ DRGYLV D+L +L EF Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEF 40
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 36.2 bits (82), Expect = 0.025 Identities = 16/38 (42%), Positives = 25/38 (65%) Frame = +2 Query: 59 SDGDNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 +D RL+R R V +M+RDRGY + ++L L+L +F Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDF 42
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 36.2 bits (82), Expect = 0.025 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 4/41 (9%) Frame = +2 Query: 62 DGDNKR----LYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 D DN+R L+R R V +M+RDRGY + +++ LSL +F Sbjct: 2 DQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDF 42
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 35.8 bits (81), Expect = 0.032 Identities = 15/32 (46%), Positives = 23/32 (71%) Frame = +2 Query: 77 RLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 RL+R R V +M+RDRGY + +++ LSL +F Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDF 42
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 212 Score = 35.4 bits (80), Expect = 0.042 Identities = 16/41 (39%), Positives = 29/41 (70%) Frame = +2 Query: 53 MASDGDNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEFV 175 M+SD D ++L++V R ++++DRGY + D ++ LS +FV Sbjct: 1 MSSD-DAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFV 40
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 214 Score = 35.0 bits (79), Expect = 0.055 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +2 Query: 59 SDGDNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEFVQR 181 +D RL+R + V +M+RDRGY + +++ +SL EF R Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSR 44
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 215 Score = 34.7 bits (78), Expect = 0.072 Identities = 14/32 (43%), Positives = 23/32 (71%) Frame = +2 Query: 77 RLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 RL+R + V +M+RDRGY + +++ LSL +F Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDF 42
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa| polypeptide (EC 2.7.7.6) (ABC27) Length = 215 Score = 33.1 bits (74), Expect = 0.21 Identities = 13/32 (40%), Positives = 23/32 (71%) Frame = +2 Query: 77 RLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEF 172 RL+R R V +M++DRGY + ++++L L +F Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDF 42
>SYV_SULSO (Q97ZK9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 842 Score = 31.2 bits (69), Expect = 0.79 Identities = 11/38 (28%), Positives = 27/38 (71%) Frame = +2 Query: 68 DNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEFVQR 181 D ++ + R +++++L+ +GYLVK +++K ++ V+R Sbjct: 347 DGLKIEQARNKMIELLKTKGYLVKVEKIKHNVLSHVER 384
>SYV_SULTO (Q972A3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 809 Score = 30.8 bits (68), Expect = 1.0 Identities = 10/38 (26%), Positives = 25/38 (65%) Frame = +2 Query: 68 DNKRLYRVRRRVLQMLRDRGYLVKDDQLKLSLYEFVQR 181 D ++ R++++++L+++GYLVK + K ++ +R Sbjct: 321 DGLKIEEARKKIIELLKEKGYLVKIENFKHNVLSHTER 358
>IF2_BORPE (Q7VYR2) Translation initiation factor IF-2| Length = 997 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 73 QAAVPRAAQGVADAARPRVPGEGRPTQAVPVRVRPA 180 + A +AA +AA VP E P A PVR PA Sbjct: 101 ELAAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPA 136
>IF2_BORBR (Q7WHG2) Translation initiation factor IF-2| Length = 997 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 73 QAAVPRAAQGVADAARPRVPGEGRPTQAVPVRVRPA 180 + A +AA +AA VP E P A PVR PA Sbjct: 101 ELAAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPA 136
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 28.9 bits (63), Expect = 3.9 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 73 VVPVGRHPLSASGAPARGLSPAS 5 V+P P SASG PAR SP+S Sbjct: 102 VIPPPARPCSASGLPARSCSPSS 124
>GUAA_SYMTH (Q67S57) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 513 Score = 28.9 bits (63), Expect = 3.9 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +1 Query: 58 VRRGQQAAVPRAAQGVADAARPRVPGEGR 144 VRRGQQ RA +ADA P + G GR Sbjct: 98 VRRGQQGEYGRATLRLADAEHPLLRGLGR 126
>SYV_STRAW (Q82CA3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 874 Score = 28.5 bits (62), Expect = 5.1 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 10 LAKDLARGHRMRIRDGVRRGQQAAVPRAAQGVADAARPRV 129 LAKDLA + + + G + G +A + +A V D R R+ Sbjct: 815 LAKDLAAAEKEKAQAGAKLGNEAFLAKAPDHVVDKIRGRL 854
>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 458 Score = 28.1 bits (61), Expect = 6.7 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 180 RWTNSYRDSLSWSSFTRYPRS 118 RW NS R SLS++ F + PR+ Sbjct: 202 RWQNSIRHSLSFNDFLKVPRA 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,594,742 Number of Sequences: 219361 Number of extensions: 416171 Number of successful extensions: 2354 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2221 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2351 length of database: 80,573,946 effective HSP length: 36 effective length of database: 72,676,950 effective search space used: 1744246800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
