ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 ... 82 6e-16
2E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (... 81 1e-15
3E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 ... 79 4e-15
4E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 ... 79 7e-15
5EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 ... 52 7e-07
6E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 ... 48 1e-05
7E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 ... 43 3e-04
8PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regula... 33 0.33
9KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 32 0.56
10TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1... 31 1.6
11HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1 29 4.7
12VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein ... 29 4.7
13VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein ... 29 6.2
14VRP1_YEAST (P37370) Verprolin 29 6.2
15CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 29 6.2
16YLM2_SCHPO (Q9P378) Hypothetical protein C19B12.02c precursor 29 6.2
17TKR_DROME (P14083) Protein TKR (dTKR) 29 6.2
18TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box prote... 29 6.2
19TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box prote... 29 6.2
20NPC1_MOUSE (O35604) Niemann-Pick C1 protein precursor 29 6.2
21NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor 29 6.2
22REV_HV1BN (P12485) REV protein (Anti-repression transactivator p... 29 6.2
23XYLT1_CANFA (Q5QQ56) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl... 28 8.1
24NPC1_PIG (P56941) Niemann-Pick C1 protein precursor 28 8.1
25P53_CERAE (P13481) Cellular tumor antigen p53 (Tumor suppressor ... 28 8.1
26DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Di... 28 8.1

>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 402

 Score = 82.0 bits (201), Expect = 6e-16
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = +3

Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQ 362
           +N  YC+     +   +Q A+D+ACG G ++C++I     C+QP +V  H S+A NSY Q
Sbjct: 268 TNQTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQ 327

Query: 363 KNAGXGATCDFMGVAXLTGADPSAGSC 443
           K      +CDF GVA +T  DPS GSC
Sbjct: 328 KEGRASGSCDFKGVAMITTTDPSHGSC 354



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>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 461

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 39/84 (46%), Positives = 46/84 (54%)
 Frame = +3

Query: 198 YCVCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNAGX 377
           +CV K  AN   +Q  I+YACG    C  I S G CF P S+ AH SY  N+Y Q N   
Sbjct: 377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHT 435

Query: 378 GATCDFMGVAXLTGADPSAGSCKY 449
              CDF G   +T +DPS G CKY
Sbjct: 436 DLACDFKGTGIVTSSDPSYGGCKY 459



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>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 501

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = +3

Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQ 362
           +N  +C+ K   +   +Q A+D+ACG G   C+ +     C++P  VVAH +YA N+Y Q
Sbjct: 356 TNQTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQ 415

Query: 363 KNAGXGATCDFMGVAXLTGADPSAGSCKY 449
           K      +CDF GVA +T  DPS G+C +
Sbjct: 416 KMGKASGSCDFKGVATVTTTDPSRGTCVF 444



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>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 505

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = +3

Query: 189 NAMYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQK 365
           ++M+CV K+DA+   +   +++ACG+G A+C  I    PC+ P  V +H S+A N Y QK
Sbjct: 359 SSMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQK 418

Query: 366 NAGXGATCDFMGVAXLTGADPSAGSCKY 449
               G TCDF G A  T  DPS  +C Y
Sbjct: 419 MKSAGGTCDFDGTAITTTRDPSYRTCAY 446



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>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Anther-specific protein A6)
          Length = 478

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +3

Query: 195 MYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQKNA 371
           ++CV    AN   +++ +  AC +    C  +     C++P+S+  H SYA NSY  +  
Sbjct: 388 VWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFR 447

Query: 372 GXGATCDFMGVAXLTGADPSAGSCKY 449
                C F G+A  T  +P    CK+
Sbjct: 448 NQSIQCFFNGLAHETTTNPGNDRCKF 473



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>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 484

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
 Frame = +3

Query: 198 YCVCKSDANPVAMQ--KAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNA 371
           +C+   +AN    Q   ++ YAC   A CT +     C   +++  + SYA NSY Q + 
Sbjct: 365 WCILAPNANLQDPQLGPSVSYACDH-ADCTSLGYGSSCGN-LNLAQNVSYAFNSYYQVSN 422

Query: 372 GXGATCDFMGVAXLTGADPSAGSCKY 449
              + C F G++ ++  DPS GSCK+
Sbjct: 423 QLDSACKFPGLSIVSTRDPSVGSCKF 448



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>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 477

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +3

Query: 198 YCVCKSDA--NPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNA 371
           +CV K +   +   +  A+ YAC  G  CT +     C   +    + SYA NSY Q   
Sbjct: 362 WCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCAN-LDGKQNISYAFNSYYQIQD 419

Query: 372 GXGATCDFMGVAXLTGADPSAGSCKY 449
                C F  ++ +T  DPS G+C++
Sbjct: 420 QLDTACKFPNISEVTKTDPSTGTCRF 445



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>PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regulated protein 1)|
          Length = 548

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
 Frame = +3

Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCS------YAC 347
           S ++ CV   D +           CG    C+ I++ G   +   V + CS      Y  
Sbjct: 385 SKSLECVVADDVDKEDYGDLFGQVCGY-IDCSAISADGSKGE-YGVASFCSDKDRLSYVL 442

Query: 348 NSYNQKNAGXGATCDFMGVAXLTGADPSAGSCK 446
           N Y        + CDF G A +     ++GSCK
Sbjct: 443 NQYYLDQDKKSSACDFKGSASINSKASASGSCK 475



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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 204 VCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNAGXGA 383
           +C   ++P   Q +   AC   + C Q      C +PI  V  CS A +   QK++   A
Sbjct: 137 ICSGASSPCCQQSSCQSACCTFSPCQQACCVPICCKPICCVPVCSGASSLCCQKSSCQPA 196

Query: 384 TC 389
            C
Sbjct: 197 CC 198



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>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
           polymerase II termination factor) (Transcription release
           factor 2)
          Length = 1184

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +2

Query: 17  PLHSLPRHANKLPPPLCLPATSALTSAAREELELHPAACCNGGSSGPHAL 166
           PLH +P     LP PL  PA+S    A R+E     A+ C+GG    H L
Sbjct: 463 PLHLVP--PQPLPRPLIQPASSLGLKAGRQETP-EGASQCSGGHMNQHHL 509



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>HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1|
          Length = 328

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 207 CKSDANPVAMQKAIDYACGKGA--HCTQITSXGPCFQPISVVAHCS 338
           C+SDA PVA+Q A     G GA   C  + +  P   P +  A  S
Sbjct: 28  CRSDARPVALQPAFPLGNGDGAFVSCLPLAAARPSPSPPAAPARPS 73



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>VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein 2)|
           (Loop-tail-associated protein) (Loop-tail protein 1)
          Length = 521

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 167 QEHEDQRSRHCSKQRDGAR 111
           ++H D+R RH SK RDG+R
Sbjct: 21  RKHRDRRDRHRSKSRDGSR 39



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>VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein 2) (Strabismus|
           1) (Loop-tail protein 1 homolog)
          Length = 521

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 167 QEHEDQRSRHCSKQRDGAR 111
           ++H D+R RH SK RDG R
Sbjct: 21  RKHRDRRDRHRSKSRDGGR 39



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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +2

Query: 2   LHTTTPLHSLPRHANKLPPPLCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVR 181
           L   T   S+ ++  K PPP   P+T    ++      L       GGS+  H    H  
Sbjct: 687 LSVRTETESISKNPTKSPPPPPSPSTMDTGTSNSPSKNLKQRLFSTGGSTLQHKHNTHTN 746

Query: 182 RLKCDVLRVQVG 217
           +   DV R  +G
Sbjct: 747 QPDVDVGRYTIG 758



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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 7   HHHPTPLSPTPRQQAPS 57
           H HP   SPTPR Q+PS
Sbjct: 78  HSHPRSRSPTPRSQSPS 94



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>YLM2_SCHPO (Q9P378) Hypothetical protein C19B12.02c precursor|
          Length = 542

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
 Frame = +3

Query: 201 CVCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCS------YACNSYNQ 362
           CV   D +         Y C +   C  IT+ G         ++C       Y  ++Y  
Sbjct: 376 CVINDDVSSDDYSDLFSYVCNE-ISCDGITANGTYPGQYGSYSYCDAKQQLDYVLDAYYS 434

Query: 363 KNAGXGATCDFMGVAXLTGADPSAGSC 443
                   CDF G A L  A  + G+C
Sbjct: 435 AKGD----CDFSGSATLVSASSATGTC 457



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>TKR_DROME (P14083) Protein TKR (dTKR)|
          Length = 1046

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +2

Query: 17  PLHSLPRHANKLPPPLCL---PATSALTSAAREELELHPAACCNGGSSGPHALARH 175
           P+HS P      PPPL L    + SA+T AA  E  L       G  + P A   H
Sbjct: 59  PMHSTPPTTPPTPPPLPLNMSQSASAVTEAATPENSLPATPPSEGALAVPSAPQDH 114



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>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 41  ANKLPPP-LCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVRRLK 190
           A  LP P L   A +A  +AA  E  LH +A       GPH  A H+R LK
Sbjct: 39  AKPLPDPGLAGAAAAAAAAAAAAEAGLHVSAL------GPHPPAAHLRSLK 83



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>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 41  ANKLPPP-LCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVRRLK 190
           A  LP P L   A +A  +AA  E  LH +A       GPH  A H+R LK
Sbjct: 39  AKPLPDPGLAGAAAAAAAAAAAAEAGLHVSAL------GPHPPAAHLRSLK 83



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>NPC1_MOUSE (O35604) Niemann-Pick C1 protein precursor|
          Length = 1278

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITS 293
           +NAMY  C+    P + +KA+   CG+ A     T+
Sbjct: 154 ANAMYNACRDVEAPSSNEKALGLLCGRDARACNATN 189



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>NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor|
          Length = 1278

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITS 293
           +NAMY  C+    P +  KA+   CGK A     T+
Sbjct: 153 ANAMYNACRDVEAPSSNDKALGLLCGKDADACNATN 188



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>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 106

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 240 FASPPGSRPTCTRSTSHLSRRTWRARA*GPEEPPLQQAAGWXXXXSL 100
           + S P  RP  TR      RR WRAR     +  +Q  +GW     L
Sbjct: 13  YQSNPPPRPEGTRQARRNRRRRWRAR-----QRQIQSLSGWILSTFL 54



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>XYLT1_CANFA (Q5QQ56) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 950

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +2

Query: 71  PATSALTSAAREELELHPA------ACCNGGSSGPHALAR 172
           PA     +  RE  +L P       ACC GG  GP A AR
Sbjct: 57  PAPPPAPAPRRERRDLPPGPAAPLGACCGGGGRGPPARAR 96



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>NPC1_PIG (P56941) Niemann-Pick C1 protein precursor|
          Length = 1277

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITS 293
           +NAMY  C+    P + +KA+   CG+ A     T+
Sbjct: 153 ANAMYNACRDVEAPSSNEKALGLLCGREAQACNATN 188



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>P53_CERAE (P13481) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 393

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 7   HHHPTPLSPTPRQQAPSPS 63
           H  PTP +PTP   AP+PS
Sbjct: 72  HMAPTPAAPTPAAPAPAPS 90



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>DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide|
           dehydrogenase)
          Length = 479

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
 Frame = +2

Query: 14  TPLHSLPRHANKLPPPLCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVRR--- 184
           T +   PR A  L   +      AL     +E+ +      NG ++G  AL   V +   
Sbjct: 210 TVVEFAPRCAPTLDSDVTDALVGALKRNGEDEVPMTGIEGVNGTNNGSIALTLEVEQAGG 269

Query: 185 ----LKCDVLRVQVGREP 226
               L CD L V VGR P
Sbjct: 270 QAETLHCDALLVSVGRRP 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,760,352
Number of Sequences: 219361
Number of extensions: 982447
Number of successful extensions: 4218
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4211
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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