Clone Name | bart07c05 |
---|---|
Clone Library Name | barley_pub |
>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 402 Score = 82.0 bits (201), Expect = 6e-16 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Frame = +3 Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQ 362 +N YC+ + +Q A+D+ACG G ++C++I C+QP +V H S+A NSY Q Sbjct: 268 TNQTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQ 327 Query: 363 KNAGXGATCDFMGVAXLTGADPSAGSC 443 K +CDF GVA +T DPS GSC Sbjct: 328 KEGRASGSCDFKGVAMITTTDPSHGSC 354
>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)| ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) Length = 461 Score = 81.3 bits (199), Expect = 1e-15 Identities = 39/84 (46%), Positives = 46/84 (54%) Frame = +3 Query: 198 YCVCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNAGX 377 +CV K AN +Q I+YACG C I S G CF P S+ AH SY N+Y Q N Sbjct: 377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHT 435 Query: 378 GATCDFMGVAXLTGADPSAGSCKY 449 CDF G +T +DPS G CKY Sbjct: 436 DLACDFKGTGIVTSSDPSYGGCKY 459
>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 501 Score = 79.3 bits (194), Expect = 4e-15 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Frame = +3 Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQ 362 +N +C+ K + +Q A+D+ACG G C+ + C++P VVAH +YA N+Y Q Sbjct: 356 TNQTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQ 415 Query: 363 KNAGXGATCDFMGVAXLTGADPSAGSCKY 449 K +CDF GVA +T DPS G+C + Sbjct: 416 KMGKASGSCDFKGVATVTTTDPSRGTCVF 444
>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 505 Score = 78.6 bits (192), Expect = 7e-15 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Frame = +3 Query: 189 NAMYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQK 365 ++M+CV K+DA+ + +++ACG+G A+C I PC+ P V +H S+A N Y QK Sbjct: 359 SSMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQK 418 Query: 366 NAGXGATCDFMGVAXLTGADPSAGSCKY 449 G TCDF G A T DPS +C Y Sbjct: 419 MKSAGGTCDFDGTAITTTRDPSYRTCAY 446
>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Anther-specific protein A6) Length = 478 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +3 Query: 195 MYCVCKSDANPVAMQKAIDYACGKG-AHCTQITSXGPCFQPISVVAHCSYACNSYNQKNA 371 ++CV AN +++ + AC + C + C++P+S+ H SYA NSY + Sbjct: 388 VWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFR 447 Query: 372 GXGATCDFMGVAXLTGADPSAGSCKY 449 C F G+A T +P CK+ Sbjct: 448 NQSIQCFFNGLAHETTTNPGNDRCKF 473
>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 484 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Frame = +3 Query: 198 YCVCKSDANPVAMQ--KAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNA 371 +C+ +AN Q ++ YAC A CT + C +++ + SYA NSY Q + Sbjct: 365 WCILAPNANLQDPQLGPSVSYACDH-ADCTSLGYGSSCGN-LNLAQNVSYAFNSYYQVSN 422 Query: 372 GXGATCDFMGVAXLTGADPSAGSCKY 449 + C F G++ ++ DPS GSCK+ Sbjct: 423 QLDSACKFPGLSIVSTRDPSVGSCKF 448
>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 477 Score = 43.1 bits (100), Expect = 3e-04 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = +3 Query: 198 YCVCKSDA--NPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNA 371 +CV K + + + A+ YAC G CT + C + + SYA NSY Q Sbjct: 362 WCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCAN-LDGKQNISYAFNSYYQIQD 419 Query: 372 GXGATCDFMGVAXLTGADPSAGSCKY 449 C F ++ +T DPS G+C++ Sbjct: 420 QLDTACKFPNISEVTKTDPSTGTCRF 445
>PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regulated protein 1)| Length = 548 Score = 33.1 bits (74), Expect = 0.33 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Frame = +3 Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCS------YAC 347 S ++ CV D + CG C+ I++ G + V + CS Y Sbjct: 385 SKSLECVVADDVDKEDYGDLFGQVCGY-IDCSAISADGSKGE-YGVASFCSDKDRLSYVL 442 Query: 348 NSYNQKNAGXGATCDFMGVAXLTGADPSAGSCK 446 N Y + CDF G A + ++GSCK Sbjct: 443 NQYYLDQDKKSSACDFKGSASINSKASASGSCK 475
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 32.3 bits (72), Expect = 0.56 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +3 Query: 204 VCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCSYACNSYNQKNAGXGA 383 +C ++P Q + AC + C Q C +PI V CS A + QK++ A Sbjct: 137 ICSGASSPCCQQSSCQSACCTFSPCQQACCVPICCKPICCVPVCSGASSLCCQKSSCQPA 196 Query: 384 TC 389 C Sbjct: 197 CC 198
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = +2 Query: 17 PLHSLPRHANKLPPPLCLPATSALTSAAREELELHPAACCNGGSSGPHAL 166 PLH +P LP PL PA+S A R+E A+ C+GG H L Sbjct: 463 PLHLVP--PQPLPRPLIQPASSLGLKAGRQETP-EGASQCSGGHMNQHHL 509
>HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1| Length = 328 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +3 Query: 207 CKSDANPVAMQKAIDYACGKGA--HCTQITSXGPCFQPISVVAHCS 338 C+SDA PVA+Q A G GA C + + P P + A S Sbjct: 28 CRSDARPVALQPAFPLGNGDGAFVSCLPLAAARPSPSPPAAPARPS 73
>VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein 2)| (Loop-tail-associated protein) (Loop-tail protein 1) Length = 521 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -2 Query: 167 QEHEDQRSRHCSKQRDGAR 111 ++H D+R RH SK RDG+R Sbjct: 21 RKHRDRRDRHRSKSRDGSR 39
>VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein 2) (Strabismus| 1) (Loop-tail protein 1 homolog) Length = 521 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -2 Query: 167 QEHEDQRSRHCSKQRDGAR 111 ++H D+R RH SK RDG R Sbjct: 21 RKHRDRRDRHRSKSRDGGR 39
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +2 Query: 2 LHTTTPLHSLPRHANKLPPPLCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVR 181 L T S+ ++ K PPP P+T ++ L GGS+ H H Sbjct: 687 LSVRTETESISKNPTKSPPPPPSPSTMDTGTSNSPSKNLKQRLFSTGGSTLQHKHNTHTN 746 Query: 182 RLKCDVLRVQVG 217 + DV R +G Sbjct: 747 QPDVDVGRYTIG 758
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +1 Query: 7 HHHPTPLSPTPRQQAPS 57 H HP SPTPR Q+PS Sbjct: 78 HSHPRSRSPTPRSQSPS 94
>YLM2_SCHPO (Q9P378) Hypothetical protein C19B12.02c precursor| Length = 542 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 6/87 (6%) Frame = +3 Query: 201 CVCKSDANPVAMQKAIDYACGKGAHCTQITSXGPCFQPISVVAHCS------YACNSYNQ 362 CV D + Y C + C IT+ G ++C Y ++Y Sbjct: 376 CVINDDVSSDDYSDLFSYVCNE-ISCDGITANGTYPGQYGSYSYCDAKQQLDYVLDAYYS 434 Query: 363 KNAGXGATCDFMGVAXLTGADPSAGSC 443 CDF G A L A + G+C Sbjct: 435 AKGD----CDFSGSATLVSASSATGTC 457
>TKR_DROME (P14083) Protein TKR (dTKR)| Length = 1046 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Frame = +2 Query: 17 PLHSLPRHANKLPPPLCL---PATSALTSAAREELELHPAACCNGGSSGPHALARH 175 P+HS P PPPL L + SA+T AA E L G + P A H Sbjct: 59 PMHSTPPTTPPTPPPLPLNMSQSASAVTEAATPENSLPATPPSEGALAVPSAPQDH 114
>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +2 Query: 41 ANKLPPP-LCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVRRLK 190 A LP P L A +A +AA E LH +A GPH A H+R LK Sbjct: 39 AKPLPDPGLAGAAAAAAAAAAAAEAGLHVSAL------GPHPPAAHLRSLK 83
>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +2 Query: 41 ANKLPPP-LCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVRRLK 190 A LP P L A +A +AA E LH +A GPH A H+R LK Sbjct: 39 AKPLPDPGLAGAAAAAAAAAAAAEAGLHVSAL------GPHPPAAHLRSLK 83
>NPC1_MOUSE (O35604) Niemann-Pick C1 protein precursor| Length = 1278 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +3 Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITS 293 +NAMY C+ P + +KA+ CG+ A T+ Sbjct: 154 ANAMYNACRDVEAPSSNEKALGLLCGRDARACNATN 189
>NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor| Length = 1278 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +3 Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITS 293 +NAMY C+ P + KA+ CGK A T+ Sbjct: 153 ANAMYNACRDVEAPSSNDKALGLLCGKDADACNATN 188
>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)| (ART/TRS) (Fragment) Length = 106 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = -1 Query: 240 FASPPGSRPTCTRSTSHLSRRTWRARA*GPEEPPLQQAAGWXXXXSL 100 + S P RP TR RR WRAR + +Q +GW L Sbjct: 13 YQSNPPPRPEGTRQARRNRRRRWRAR-----QRQIQSLSGWILSTFL 54
>XYLT1_CANFA (Q5QQ56) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 950 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 6/40 (15%) Frame = +2 Query: 71 PATSALTSAAREELELHPA------ACCNGGSSGPHALAR 172 PA + RE +L P ACC GG GP A AR Sbjct: 57 PAPPPAPAPRRERRDLPPGPAAPLGACCGGGGRGPPARAR 96
>NPC1_PIG (P56941) Niemann-Pick C1 protein precursor| Length = 1277 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +3 Query: 186 SNAMYCVCKSDANPVAMQKAIDYACGKGAHCTQITS 293 +NAMY C+ P + +KA+ CG+ A T+ Sbjct: 153 ANAMYNACRDVEAPSSNEKALGLLCGREAQACNATN 188
>P53_CERAE (P13481) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 393 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 7 HHHPTPLSPTPRQQAPSPS 63 H PTP +PTP AP+PS Sbjct: 72 HMAPTPAAPTPAAPAPAPS 90
>DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide| dehydrogenase) Length = 479 Score = 28.5 bits (62), Expect = 8.1 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Frame = +2 Query: 14 TPLHSLPRHANKLPPPLCLPATSALTSAAREELELHPAACCNGGSSGPHALARHVRR--- 184 T + PR A L + AL +E+ + NG ++G AL V + Sbjct: 210 TVVEFAPRCAPTLDSDVTDALVGALKRNGEDEVPMTGIEGVNGTNNGSIALTLEVEQAGG 269 Query: 185 ----LKCDVLRVQVGREP 226 L CD L V VGR P Sbjct: 270 QAETLHCDALLVSVGRRP 287 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,760,352 Number of Sequences: 219361 Number of extensions: 982447 Number of successful extensions: 4218 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4211 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)