Clone Name | bart07c04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB063117.1| Hordeum vulgare HvAPX1 mRNA for peroxisome type ascorbate peroxidase, complete cds Length = 1089 Score = 206 bits (104), Expect = 2e-50 Identities = 134/146 (91%) Strand = Plus / Plus Query: 65 cttctngggtcgtccgcgatggcngctcccgtggtggacgcccagtacctgcgccnggtc 124 ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||| |||| Sbjct: 1 cttctagggtcgtccgcgatggcggctccggtggtggacgccgagtacctgcgccaggtc 60 Query: 125 gacggggcgcgccgcgccctccgtgccctcatcgcccccnagggatgcgcccccntcagg 184 ||| |||||||||||||| ||||||||||||||||| || |||||||||||||| ||| | Sbjct: 61 gacagggcgcgccgcgccttccgtgccctcatcgcctccaagggatgcgcccccatcatg 120 Query: 185 ctccgcctcgcatggcatgatnctgg 210 ||||||||||||||||||||| |||| Sbjct: 121 ctccgcctcgcatggcatgatgctgg 146
>gb|BT016732.1| Zea mays clone Contig565 mRNA sequence Length = 1248 Score = 127 bits (64), Expect = 1e-26 Identities = 113/131 (86%) Strand = Plus / Plus Query: 80 gcgatggcngctcccgtggtggacgcccagtacctgcgccnggtcgacggggcgcgccgc 139 |||||||| |||||| |||| |||||| | |||||||||| ||||||| ||||||||||| Sbjct: 134 gcgatggcggctcccatggtcgacgccgaatacctgcgccaggtcgacagggcgcgccgc 193 Query: 140 gccctccgtgccctcatcgcccccnagggatgcgcccccntcaggctccgcctcgcatgg 199 |||||| ||||||||| || | ||||||||||||| ||| |||||||||||||||| Sbjct: 194 cacctccgcgccctcatctccaacaagggatgcgccccgatcatgctccgcctcgcatgg 253 Query: 200 catgatnctgg 210 |||||| |||| Sbjct: 254 catgatgctgg 264
>ref|XM_483666.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1158 Score = 115 bits (58), Expect = 6e-23 Identities = 94/107 (87%) Strand = Plus / Plus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| |||||| ||||||||| Sbjct: 122 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccacctccgcgccctcatc 181 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgcatggcatga 204 || || |||||||||| ||| ||| ||||||||||||||||||||| Sbjct: 182 tcctccaagggatgcgcgcccatcatgctccgcctcgcatggcatga 228
>ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B11.9 mRNA Length = 1229 Score = 115 bits (58), Expect = 6e-23 Identities = 94/107 (87%) Strand = Plus / Plus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| |||||| ||||||||| Sbjct: 133 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccacctccgcgccctcatc 192 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgcatggcatga 204 || || |||||||||| ||| ||| ||||||||||||||||||||| Sbjct: 193 tcctccaagggatgcgcgcccatcatgctccgcctcgcatggcatga 239
>dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074O14, full insert sequence Length = 1229 Score = 115 bits (58), Expect = 6e-23 Identities = 94/107 (87%) Strand = Plus / Plus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| |||||| ||||||||| Sbjct: 133 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccacctccgcgccctcatc 192 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgcatggcatga 204 || || |||||||||| ||| ||| ||||||||||||||||||||| Sbjct: 193 tcctccaagggatgcgcgcccatcatgctccgcctcgcatggcatga 239
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 113 bits (57), Expect = 2e-22 Identities = 98/113 (86%) Strand = Plus / Minus Query: 83 atggcngctcccgtggtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgcc 142 ||||| ||||| ||||||||||| |||||||||| | |||||| ||||||||||||| | Sbjct: 20903600 atggcggctccggtggtggacgcggagtacctgcgacaggtcgagggggcgcgccgcgac 20903541 Query: 143 ctccgtgccctcatcgcccccnagggatgcgcccccntcaggctccgcctcgc 195 ||||| || ||||||||| || |||| ||||||||| ||| |||||||||||| Sbjct: 20903540 ctccgcgcgctcatcgcctccaagggctgcgcccccatcatgctccgcctcgc 20903488
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 113 bits (57), Expect = 2e-22 Identities = 98/113 (86%) Strand = Plus / Minus Query: 83 atggcngctcccgtggtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgcc 142 ||||| ||||| ||||||||||| |||||||||| | |||||| ||||||||||||| | Sbjct: 95826 atggcggctccggtggtggacgcggagtacctgcgacaggtcgagggggcgcgccgcgac 95767 Query: 143 ctccgtgccctcatcgcccccnagggatgcgcccccntcaggctccgcctcgc 195 ||||| || ||||||||| || |||| ||||||||| ||| |||||||||||| Sbjct: 95766 ctccgcgcgctcatcgcctccaagggctgcgcccccatcatgctccgcctcgc 95714
>dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B09, full insert sequence Length = 1158 Score = 107 bits (54), Expect = 1e-20 Identities = 93/107 (86%) Strand = Plus / Plus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| |||||| ||||||||| Sbjct: 122 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccacctccgcgccctcatc 181 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgcatggcatga 204 | || |||||||||| ||| ||| ||||||||||||||||||||| Sbjct: 182 ttctccaagggatgcgcgcccatcatgctccgcctcgcatggcatga 228
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 97.6 bits (49), Expect = 1e-17 Identities = 85/98 (86%) Strand = Plus / Minus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| |||||| ||||||||| Sbjct: 27551939 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccacctccgcgccctcatc 27551880 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgc 195 || || |||||||||| ||| ||| |||||||||||| Sbjct: 27551879 tcctccaagggatgcgcgcccatcatgctccgcctcgc 27551842
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 97.6 bits (49), Expect = 1e-17 Identities = 85/98 (86%) Strand = Plus / Minus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| |||||| ||||||||| Sbjct: 34229 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccacctccgcgccctcatc 34170 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgc 195 || || |||||||||| ||| ||| |||||||||||| Sbjct: 34169 tcctccaagggatgcgcgcccatcatgctccgcctcgc 34132
>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene region Length = 65993 Score = 81.8 bits (41), Expect = 8e-13 Identities = 83/98 (84%) Strand = Plus / Minus Query: 98 gtggacgcccagtacctgcgccnggtcgacggggcgcgccgcgccctccgtgccctcatc 157 ||||||||| ||||||| |||| ||||||| ||||||||||| || || ||||||||| Sbjct: 56979 gtggacgccgagtacctccgccaggtcgacagggcgcgccgccaacttcgcgccctcatc 56920 Query: 158 gcccccnagggatgcgcccccntcaggctccgcctcgc 195 || || |||||||||| ||| ||| |||||||||||| Sbjct: 56919 tcctccaagggatgcgcgcccatcatgctccgcctcgc 56882
>gb|AY109419.1| Zea mays CL26634_1 mRNA sequence Length = 1373 Score = 65.9 bits (33), Expect = 5e-08 Identities = 54/62 (87%) Strand = Plus / Minus Query: 149 gccctcatcgcccccnagggatgcgcccccntcaggctccgcctcgcatggcatgatnct 208 ||||||||| || | ||||||||||||| ||| |||||||||||||||||||||| || Sbjct: 1206 gccctcatctccaacaagggatgcgccccgatcatgctccgcctcgcatggcatgatgct 1147 Query: 209 gg 210 || Sbjct: 1146 gg 1145
>gb|AF159254.1|AF159254 Zantedeschia aethiopica ascorbate peroxidase (cmApx) mRNA, complete cds Length = 1167 Score = 50.1 bits (25), Expect = 0.003 Identities = 73/90 (81%) Strand = Plus / Plus Query: 121 ggtcgacggggcgcgccgcgccctccgtgccctcatcgcccccnagggatgcgcccccnt 180 ||||||| ||||||| | | |||||| |||||||||||| | || ||||| ||| | Sbjct: 90 ggtcgacaaggcgcgcagggacctccgcgccctcatcgccagcaagaactgcgctcccgt 149 Query: 181 caggctccgcctcgcatggcatgatnctgg 210 || ||||||||| |||||||||||| |||| Sbjct: 150 catgctccgcctagcatggcatgatgctgg 179
>gb|AY382617.1| Oryza sativa (indica cultivar-group) putative peroxisome-bound ascorbate peroxidase (APx3) mRNA, complete cds Length = 1060 Score = 46.1 bits (23), Expect = 0.043 Identities = 60/73 (82%) Strand = Plus / Plus Query: 129 gggcgcgccgcgccctccgtgccctcatcgcccccnagggatgcgcccccntcaggctcc 188 |||||||||||| ||| || |||||||||||| | || | ||||| ||| ||| ||||| Sbjct: 89 gggcgcgccgcgacctgcgcgccctcatcgccagcaagagctgcgctcccatcatgctcc 148 Query: 189 gcctcgcatggca 201 |||| || ||||| Sbjct: 149 gcctggcgtggca 161
>ref|XM_474945.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 46.1 bits (23), Expect = 0.043 Identities = 60/73 (82%) Strand = Plus / Plus Query: 129 gggcgcgccgcgccctccgtgccctcatcgcccccnagggatgcgcccccntcaggctcc 188 |||||||||||| ||| || |||||||||||| | || | ||||| ||| ||| ||||| Sbjct: 50 gggcgcgccgcgacctgcgcgccctcatcgccagcaagagctgcgctcccatcatgctcc 109 Query: 189 gcctcgcatggca 201 |||| || ||||| Sbjct: 110 gcctggcgtggca 122
>ref|NM_187854.1| Oryza sativa (japonica cultivar-group), Ozsa8298 predicted mRNA Length = 1290 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 gacggggcgcgccgcgccctcc 146 |||||||||||||||||||||| Sbjct: 24 gacggggcgcgccgcgccctcc 3
>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21, complete sequence Length = 130433 Score = 44.1 bits (22), Expect = 0.17 Identities = 53/64 (82%) Strand = Plus / Minus Query: 129 gggcgcgccgcgccctccgtgccctcatcgcccccnagggatgcgcccccntcaggctcc 188 |||||||||||| ||| || |||||||||||| | || | ||||| ||| ||| ||||| Sbjct: 11147 gggcgcgccgcgacctgcgcgccctcatcgccagcaagagctgcgctcccatcatgctcc 11088 Query: 189 gcct 192 |||| Sbjct: 11087 gcct 11084
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.17 Identities = 53/64 (82%) Strand = Plus / Minus Query: 129 gggcgcgccgcgccctccgtgccctcatcgcccccnagggatgcgcccccntcaggctcc 188 |||||||||||| ||| || |||||||||||| | || | ||||| ||| ||| ||||| Sbjct: 8200634 gggcgcgccgcgacctgcgcgccctcatcgccagcaagagctgcgctcccatcatgctcc 8200575 Query: 189 gcct 192 |||| Sbjct: 8200574 gcct 8200571
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 gacggggcgcgccgcgccctcc 146 |||||||||||||||||||||| Sbjct: 8283612 gacggggcgcgccgcgccctcc 8283591 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 ctcctcgcctcgctccccgcc 49 ||||||||||||||||||||| Sbjct: 41126850 ctcctcgcctcgctccccgcc 41126830
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 gacggggcgcgccgcgccctcc 146 |||||||||||||||||||||| Sbjct: 77543 gacggggcgcgccgcgccctcc 77522
>dbj|AK100105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004L24, full insert sequence Length = 1965 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 gacggggcgcgccgcgccctcc 146 |||||||||||||||||||||| Sbjct: 145 gacggggcgcgccgcgccctcc 124
>ref|NM_190069.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1269 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 ctcctcgcctcgctccccgcc 49 ||||||||||||||||||||| Sbjct: 493 ctcctcgcctcgctccccgcc 513
>emb|Z34934.1|ZMAPXG Z.mays apx gene encoding cytosolic ascorbate peroxidase Length = 1042 Score = 42.1 bits (21), Expect = 0.67 Identities = 29/32 (90%) Strand = Plus / Plus Query: 170 tgcgcccccntcaggctccgcctcgcatggca 201 |||||||| ||| |||||||||||||||||| Sbjct: 165 tgcgccccgctcatgctccgcctcgcatggca 196
>gb|DQ078123.1| Rheum australe ascorbate peroxidase mRNA, complete cds Length = 1192 Score = 42.1 bits (21), Expect = 0.67 Identities = 29/32 (90%) Strand = Plus / Plus Query: 170 tgcgcccccntcaggctccgcctcgcatggca 201 ||||||||| ||| |||||||||||| ||||| Sbjct: 91 tgcgcccccatcatgctccgcctcgcgtggca 122
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 ctcctcgcctcgctccccgcc 49 ||||||||||||||||||||| Sbjct: 23905 ctcctcgcctcgctccccgcc 23885
>dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C07, full insert sequence Length = 1405 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 ctcctcgcctcgctccccgcc 49 ||||||||||||||||||||| Sbjct: 414 ctcctcgcctcgctccccgcc 434
>gb|AY104492.1| Zea mays PCO104002 mRNA sequence Length = 1052 Score = 42.1 bits (21), Expect = 0.67 Identities = 29/32 (90%) Strand = Plus / Plus Query: 170 tgcgcccccntcaggctccgcctcgcatggca 201 |||||||| ||| |||||||||||||||||| Sbjct: 179 tgcgccccgctcatgctccgcctcgcatggca 210
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 2.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 111 acctgcgccnggtcgacggggcgcgcc 137 ||||||||| ||||||||||| ||||| Sbjct: 69456 acctgcgcctggtcgacggggtgcgcc 69430
>gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia retrotransposon ji, complete sequence; and helitron Mo17_14594, complete sequence Length = 57607 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ctcgcctcgctccccgcccc 51 |||||||||||||||||||| Sbjct: 27235 ctcgcctcgctccccgcccc 27216
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ctcgcctcgctccccgcccc 51 |||||||||||||||||||| Sbjct: 156107 ctcgcctcgctccccgcccc 156126
>emb|AL645685.12| Mouse DNA sequence from clone RP23-198I4 on chromosome 1 Contains a ribosomal protein S13 (Rps13) pseudogene, a ribosomal protein S27 (Rps27) pseudogene a novel genes and the 3' end of a novel gene, complete sequence Length = 218950 Score = 40.1 bits (20), Expect = 2.7 Identities = 36/40 (90%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 31 cctcgcctcgc-tccccgccccgcccatttcttctcttct 69 ||||||||||| ||||| |||| ||| ||||||||||||| Sbjct: 209097 cctcgcctcgcctcccctcccctcccctttcttctcttct 209058
>gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence Length = 176679 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ctcgcctcgctccccgcccc 51 |||||||||||||||||||| Sbjct: 169162 ctcgcctcgctccccgcccc 169143
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 gccctccgtgccctcatcgccccc 163 |||||||||||||||| ||||||| Sbjct: 83574 gccctccgtgccctcagcgccccc 83597
>gb|AC073650.44| Homo sapiens 12 BAC RP11-44F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91200 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cggggcgcgccgcgccctcc 146 |||||||||||||||||||| Sbjct: 51853 cggggcgcgccgcgccctcc 51872
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgacggggcgcgccgcgccc 143 |||||||||||||||||||| Sbjct: 2592165 cgacggggcgcgccgcgccc 2592146
>ref|NM_207746.1| Eremothecium gossypii AAL149Cp (AAL149C), mRNA Length = 1872 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 gccctccgtgccctcatcgccccc 163 |||||||||||||||| ||||||| Sbjct: 492 gccctccgtgccctcagcgccccc 469 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,278,247 Number of Sequences: 3902068 Number of extensions: 1278247 Number of successful extensions: 101763 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 100991 Number of HSP's gapped (non-prelim): 772 length of query: 210 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 188 effective length of database: 17,147,199,772 effective search space: 3223673557136 effective search space used: 3223673557136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)