ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein... 31 2.1
2K1C13_ONCMY (Q8JFQ6) Keratin, type I cytoskeletal 13 (Cytokerati... 29 6.0

>TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein TGA-1A (TGA1a)|
           (ASF-1 protein)
          Length = 359

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 147 KESRGSGGGVDQTMRTSRGAMGFGSSYFSLPFGRWSESGT 28
           K+    GGGVD +  +  G    G++ F + +G W E  T
Sbjct: 119 KQGMCVGGGVDASQLSYSGTASSGTAVFDMEYGHWVEEQT 158



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>K1C13_ONCMY (Q8JFQ6) Keratin, type I cytoskeletal 13 (Cytokeratin-13) (CK-13)|
           (Keratin-13) (K13)
          Length = 492

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 141 SRGSGGGVDQTMRTSRGA-MGFGSSYFSLPFGRWSESGTGEAGG 13
           S G GGG   +MR+  G  MG GSS FS      S  G G  GG
Sbjct: 13  SGGGGGGGTMSMRSGGGGGMGMGSSRFS------SMGGGGGGGG 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,498,816
Number of Sequences: 219361
Number of extensions: 460898
Number of successful extensions: 1629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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