ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart07b12 |
|---|---|
| Clone Library Name | barley_pub |
>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)| Length = 398 Score = 176 bits (446), Expect = 3e-44 Identities = 85/138 (61%), Positives = 103/138 (74%) Frame = +3 Query: 63 MYLVKDIXXXXXXXXXXXXXXXTWPVVLAVLERRGRLPQHTYLDYSXTNFLAAVLIALTF 242 MYLV+ TWP VL +LERRGRLPQHTYLDYS TN LAA++IA TF Sbjct: 1 MYLVESKGGAIACMLLALLSLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60 Query: 243 GQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMA 422 GQIG P++PNF+TQL QD WPS+MFA+AGG+V++LG ++TQY WA VGLSVTEV+ Sbjct: 61 GQIGSTKPDSPNFITQLA--QDNWPSVMFAMAGGIVLSLGNLSTQYAWALVGLSVTEVIT 118 Query: 423 SSLRVVIGTTLNYFLDGR 476 SS+ VVIG+TLNYFLD + Sbjct: 119 SSITVVIGSTLNYFLDDK 136
>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)| Length = 413 Score = 168 bits (425), Expect = 8e-42 Identities = 78/114 (68%), Positives = 96/114 (84%) Frame = +3 Query: 129 TWPVVLAVLERRGRLPQHTYLDYSXTNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQD 308 TWP ++A+LERRGRLPQHTYLDYS TNFLAA+ IA FG IG T E P+F+TQLTQ QD Sbjct: 31 TWPALMALLERRGRLPQHTYLDYSITNFLAAIFIAFVFGGIGESTHEAPSFITQLTQIQD 90 Query: 309 YWPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTLNYFLD 470 WPS++FA+AGGV +++G +ATQY A+VGLSVTEV A+S+ VV+GTT+NYFLD Sbjct: 91 NWPSVLFAMAGGVGLSIGNLATQYSLAFVGLSVTEVTAASITVVVGTTVNYFLD 144
>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)| Length = 390 Score = 165 bits (417), Expect = 6e-41 Identities = 81/138 (58%), Positives = 100/138 (72%) Frame = +3 Query: 63 MYLVKDIXXXXXXXXXXXXXXXTWPVVLAVLERRGRLPQHTYLDYSXTNFLAAVLIALTF 242 MY+++ TWP ++ + ERRGRLPQHTYLDY+ TN LAAV+IALT Sbjct: 1 MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60 Query: 243 GQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMA 422 G+IG P PNF TQL+Q D W S+MFA+AGG+V++LG +ATQY WAYVGLSVTEV+ Sbjct: 61 GEIG---PSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVIT 115 Query: 423 SSLRVVIGTTLNYFLDGR 476 +S+ VVIGTTLNYFLD R Sbjct: 116 ASITVVIGTTLNYFLDDR 133
>UPSA3_VIGUN (Q41706) Probable ureide permease A3 (VuA3) (Fragment)| Length = 376 Score = 164 bits (414), Expect = 1e-40 Identities = 77/116 (66%), Positives = 96/116 (82%) Frame = +3 Query: 129 TWPVVLAVLERRGRLPQHTYLDYSXTNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQD 308 TWP +L +LERRGRLPQHTYLDYS TNF AA+LIA TFG+IG P+ PNFL QL QD Sbjct: 22 TWPALLTMLERRGRLPQHTYLDYSITNFFAALLIAFTFGEIGKGKPDEPNFLAQLA--QD 79 Query: 309 YWPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTLNYFLDGR 476 WPS++FA+ GGVV++LG +++QY +A+VGLSVTEV+ +S+ VVIGTTLNYFLD + Sbjct: 80 NWPSVLFAMGGGVVLSLGNLSSQYAFAFVGLSVTEVITASITVVIGTTLNYFLDDK 135
>UPS3_ARATH (Q9ZPR6) Ureide permease 3 (AtUPS3)| Length = 344 Score = 162 bits (410), Expect = 4e-40 Identities = 79/138 (57%), Positives = 100/138 (72%) Frame = +3 Query: 63 MYLVKDIXXXXXXXXXXXXXXXTWPVVLAVLERRGRLPQHTYLDYSXTNFLAAVLIALTF 242 MY+++ TWP ++ + ERRGRLPQHTYLDY+ TN LAAV+IA T Sbjct: 1 MYVIESKGGTITCMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIAFTL 60 Query: 243 GQIGGDTPETPNFLTQLTQPQDYWPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMA 422 G+I +P PNF TQL+Q D WPS+MFA+AGG+ ++LGT+ATQY WA+VGLSVTEV+ Sbjct: 61 GEI---SPSRPNFTTQLSQ--DNWPSVMFAMAGGIFLSLGTLATQYAWAFVGLSVTEVIT 115 Query: 423 SSLRVVIGTTLNYFLDGR 476 +S+ VVIGTTLNYFLD R Sbjct: 116 ASIAVVIGTTLNYFLDDR 133
>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)| Length = 401 Score = 149 bits (377), Expect = 3e-36 Identities = 69/116 (59%), Positives = 94/116 (81%) Frame = +3 Query: 129 TWPVVLAVLERRGRLPQHTYLDYSXTNFLAAVLIALTFGQIGGDTPETPNFLTQLTQPQD 308 +WP +L +LERRGRLPQHT+LD++ N LAA++IA + G+IG T P+F TQL PQD Sbjct: 23 SWPAILTLLERRGRLPQHTFLDFATANLLAAIVIAFSLGEIGKSTFLKPDFTTQL--PQD 80 Query: 309 YWPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTLNYFLDGR 476 WPS++ A+AGGV++++G +ATQY +A+VGLSVTEV+ +S+ VVIGTTLNYFLD + Sbjct: 81 NWPSVLLAVAGGVLLSIGNLATQYAFAFVGLSVTEVITASITVVIGTTLNYFLDNK 136
>HBAD_PHACA (P10781) Hemoglobin alpha-D subunit (Hemoglobin alpha-D chain)| (Alpha-D-globin) Length = 141 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 350 HHAARQRKHDGRPVVLRLGELSEEIGRLRRVAADLA 243 HH + Q ++ G+ VV LG + + LR+ ADL+ Sbjct: 49 HHGSEQIRNHGKKVVTALGNAIQNLDNLRQTLADLS 84
>Y2243_STRP8 (Q8NYZ3) Putative sugar uptake protein spyM18_2243| Length = 287 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +3 Query: 324 MFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTL 455 +F + GG + ++G + Y+G+SV ++S ++V+G+ + Sbjct: 60 LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLI 103
>Y2205_STRP1 (P0C0G9) Putative sugar uptake protein SPy2205/M5005_Spy1856| Length = 287 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +3 Query: 324 MFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTL 455 +F + GG + ++G + Y+G+SV ++S ++V+G+ + Sbjct: 60 LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLI 103
>Y1874_STRP6 (Q5X9A4) Putative sugar uptake protein M6_Spy1874| Length = 287 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +3 Query: 324 MFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTL 455 +F + GG + ++G + Y+G+SV ++S ++V+G+ + Sbjct: 60 LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLI 103
>Y1856_STRP3 (P60948) Putative sugar uptake protein SpyM3_1856/SPs1852| Length = 287 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +3 Query: 324 MFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTL 455 +F + GG + ++G + Y+G+SV ++S ++V+G+ + Sbjct: 60 LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLI 103
>YXFA_LACLA (Q9CDF7) Putative sugar uptake protein yxfA| Length = 295 Score = 29.3 bits (64), Expect = 5.5 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +3 Query: 312 WPSIMFALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLRVVIGTTLNYF 464 W + GG++ +G Y+G+SV ++S ++VIG + F Sbjct: 56 WQIFLIGFIGGLLWAIGQFGQFNSMKYMGVSVASPLSSGSQLVIGGLIGVF 106
>TRAI5_ECOLI (Q00192) Protein traI| Length = 747 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -3 Query: 395 DVCPAVLRGHGAEGDHHAARQRKHDGRPVVL-RLGELSEEIGRLRRVAADLAECEGDQ 225 ++C A+ R +G E D+H R+R +GR + R + +G ++R D E +G Q Sbjct: 143 ELCTALERDYGLERDNHEPRKRGAEGRAADMERHAGVESLVGWIKRECLD--EIKGAQ 198
>CTF4_YEAST (Q01454) DNA polymerase alpha-binding protein (CTF4 protein)| (Protein POB1) (Chromosome replication protein CHL15) Length = 926 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +3 Query: 396 GLSVTEVMASSLRVVIGTTLNYF 464 G +T V A+ +RV++GT+L YF Sbjct: 574 GERITSVAATPVRVIVGTSLGYF 596
>RHG04_HUMAN (P98171) Rho-GTPase-activating protein 4 (Rho-GAP hematopoietic| protein C1) (p115) Length = 946 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -3 Query: 389 CPAVLRGHGAEGDHHAARQRKHDGRPVVLRLGELSEEIGRLRRVAADLAE 240 C AVL H + +A + P+ RL ++E++GRL + + DL + Sbjct: 102 CWAVLLQHTRQQSRESAALSEVLAGPLAQRLSHIAEDVGRLVKKSRDLEQ 151
>K1024_HUMAN (Q9UPX6) UPF0258 protein KIAA1024| Length = 916 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = -3 Query: 374 RGHGAEGDHHAARQRKHDGRPVVLRLGELSEEIGRLRRVAADLAECEG 231 +G+ E HH+ + K +VLR+GE+ ++ L V ++++ G Sbjct: 578 KGNRPENTHHSEEELKTSVCKLVLRIGEIERKLESLSGVRDEISQVLG 625 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,615,279 Number of Sequences: 219361 Number of extensions: 1090807 Number of successful extensions: 3606 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3599 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
