Clone Name | bart07b12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full insert sequence Length = 1826 Score = 319 bits (161), Expect = 5e-84 Identities = 352/416 (84%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 224 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 283 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 284 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 343 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 344 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 403 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccagccg 302 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 404 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 463 Query: 303 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 362 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 464 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 523 Query: 363 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcc 422 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 524 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcg 583 Query: 423 tcaagtctcagggttgtcatagggacgacactgaactattttctggacggccggat 478 ||||| || | ||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 584 tcaagcctgaaggttgtcatagggacaacactgaactattttctcgatggccggat 639
>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full insert sequence Length = 2721 Score = 319 bits (161), Expect = 5e-84 Identities = 352/416 (84%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 1119 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 1178 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 1179 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 1238 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 1239 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 1298 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccagccg 302 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 1299 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 1358 Query: 303 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 362 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 1359 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 1418 Query: 363 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcc 422 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 1419 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcg 1478 Query: 423 tcaagtctcagggttgtcatagggacgacactgaactattttctggacggccggat 478 ||||| || | ||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 1479 tcaagcctgaaggttgtcatagggacaacactgaactattttctcgatggccggat 1534
>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full insert sequence Length = 2118 Score = 319 bits (161), Expect = 5e-84 Identities = 352/416 (84%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 236 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 295 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 296 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 355 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 356 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 415 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccagccg 302 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 416 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 475 Query: 303 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 362 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 476 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 535 Query: 363 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcc 422 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 536 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcg 595 Query: 423 tcaagtctcagggttgtcatagggacgacactgaactattttctggacggccggat 478 ||||| || | ||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 596 tcaagcctgaaggttgtcatagggacaacactgaactattttctcgatggccggat 651
>dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A09, full insert sequence Length = 1443 Score = 319 bits (161), Expect = 5e-84 Identities = 352/416 (84%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 128 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 187 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 188 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 247 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 248 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 307 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccagccg 302 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 308 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 367 Query: 303 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 362 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 368 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 427 Query: 363 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcc 422 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 428 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcg 487 Query: 423 tcaagtctcagggttgtcatagggacgacactgaactattttctggacggccggat 478 ||||| || | ||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 488 tcaagcctgaaggttgtcatagggacaacactgaactattttctcgatggccggat 543
>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full insert sequence Length = 1828 Score = 319 bits (161), Expect = 5e-84 Identities = 352/416 (84%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 224 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 283 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 284 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 343 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 344 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 403 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccagccg 302 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 404 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 463 Query: 303 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 362 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 464 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 523 Query: 363 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcc 422 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 524 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcg 583 Query: 423 tcaagtctcagggttgtcatagggacgacactgaactattttctggacggccggat 478 ||||| || | ||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 584 tcaagcctgaaggttgtcatagggacaacactgaactattttctcgatggccggat 639
>dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B06, full insert sequence Length = 1551 Score = 319 bits (161), Expect = 5e-84 Identities = 352/416 (84%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 205 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 264 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 265 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 324 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 325 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 384 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccagccg 302 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | Sbjct: 385 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccagatg 444 Query: 303 caggactactggccgtccatcatgtttgcgctggcgggcggcgtggtgatcaccctcggc 362 |||||| ||||||| || ||| |||| ||| || |||| ||| | | | | ||| || Sbjct: 445 caggacaactggccttcaatcttgttcgcgatgtcgggtggcatctttaacggcctaggg 504 Query: 363 accgtggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcc 422 || |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| Sbjct: 505 acactggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcg 564 Query: 423 tcaagtctcagggttgtcatagggacgacactgaactattttctggacggccggat 478 ||||| || | ||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 565 tcaagcctgaaggttgtcatagggacaacactgaactattttctcgatggccggat 620
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 210 bits (106), Expect = 3e-51 Identities = 204/237 (86%) Strand = Plus / Minus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 19225479 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 19225420 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 19225419 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 19225360 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 19225359 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 19225300 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccag 299 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 19225299 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 19225243 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 367 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 426 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| Sbjct: 19224784 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 19224725 Query: 427 gtctcagggttgtcatagg 445 | || | |||||||||||| Sbjct: 19224724 gcctgaaggttgtcatagg 19224706 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Minus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 19205337 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 19205278 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 19205277 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 19205238 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 443 agggacgacactgaactattttctggacggccggat 478 |||||| ||||||||||||||||| || |||||||| Sbjct: 19224584 agggacaacactgaactattttctcgatggccggat 19224549 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 165 ggacggctgccgcagcacacgtacctcgactactc 199 ||||||||||| |||||||| ||||| |||||||| Sbjct: 19246989 ggacggctgcctcagcacacatacctggactactc 19246955
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 210 bits (106), Expect = 3e-51 Identities = 204/237 (86%) Strand = Plus / Minus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 19151706 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 19151647 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 19151646 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 19151587 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 19151586 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 19151527 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccag 299 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 19151526 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 19151470 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 367 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 426 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| Sbjct: 19151011 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 19150952 Query: 427 gtctcagggttgtcatagg 445 | || | |||||||||||| Sbjct: 19150951 gcctgaaggttgtcatagg 19150933 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Minus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 19131564 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 19131505 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 19131504 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 19131465 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 443 agggacgacactgaactattttctggacggccggat 478 |||||| ||||||||||||||||| || |||||||| Sbjct: 19150811 agggacaacactgaactattttctcgatggccggat 19150776 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 165 ggacggctgccgcagcacacgtacctcgactactc 199 ||||||||||| |||||||| ||||| |||||||| Sbjct: 19173216 ggacggctgcctcagcacacatacctggactactc 19173182
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 210 bits (106), Expect = 3e-51 Identities = 204/237 (86%) Strand = Plus / Plus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 466 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 525 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 526 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 585 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 586 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 645 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccag 299 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 646 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 702 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 367 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 426 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| Sbjct: 1161 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 1220 Query: 427 gtctcagggttgtcatagg 445 | || | |||||||||||| Sbjct: 1221 gcctgaaggttgtcatagg 1239 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Plus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 20644 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 20703 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 20704 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 20743 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 443 agggacgacactgaactattttctggacggccggat 478 |||||| ||||||||||||||||| || |||||||| Sbjct: 1361 agggacaacactgaactattttctcgatggccggat 1396
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 210 bits (106), Expect = 3e-51 Identities = 204/237 (86%) Strand = Plus / Minus Query: 63 atgtatctggtgaaggacatcggcggagccctcgggctgatggcggcggccttggtgctc 122 |||||||| |||||||| |||||||| ||| | | |||||||| | | | |||||||| Sbjct: 58809 atgtatcttgtgaaggatatcggcggcgccattgcgctgatgggcgtgtcactggtgctc 58750 Query: 123 ctcggcacctggccggtcgtcctcgccgtgctggagcgccggggacggctgccgcagcac 182 || ||||| |||||||| ||||||||||||||||||||||| || || || ||||||||| Sbjct: 58749 ctgggcacatggccggtggtcctcgccgtgctggagcgccgcggccgcctcccgcagcac 58690 Query: 183 acgtacctcgactactccnacaccaacttcctggccgccgtgctgatcgccctcacattc 242 || ||||| ||||||||| |||||||||||| |||||| | || ||||| |||| ||| Sbjct: 58689 acctacctggactactccatcaccaacttcctcgccgccctcctcgtcgccttcaccttc 58630 Query: 243 ggccagatcggcggcgacacgccggagacgcccaatttcctcactcagctcacccag 299 ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 58629 ggccagatcggcgccgacacgccggagacgcctaatttcctcacacagctcacccag 58573 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 367 tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 426 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| Sbjct: 58114 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 58055 Query: 427 gtctcagggttgtcatagg 445 | || | |||||||||||| Sbjct: 58054 gcctgaaggttgtcatagg 58036 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Minus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 38667 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 38608 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 38607 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 38568 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Minus Query: 443 agggacgacactgaactattttctggacggccggat 478 |||||| ||||||||||||||||| || |||||||| Sbjct: 57914 agggacaacactgaactattttctcgatggccggat 57879 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 165 ggacggctgccgcagcacacgtacctcgactactc 199 ||||||||||| |||||||| ||||| |||||||| Sbjct: 80319 ggacggctgcctcagcacacatacctggactactc 80285
>dbj|AK106219.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H06, full insert sequence Length = 1626 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Plus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 180 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 239 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 240 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 279
>dbj|AK073792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068M22, full insert sequence Length = 1745 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Plus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 181 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 240 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 241 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 280
>dbj|AK072750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134K21, full insert sequence Length = 2066 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Plus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 557 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 616 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 617 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 656
>dbj|AK058620.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B07, full insert sequence Length = 1587 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/100 (82%) Strand = Plus / Plus Query: 156 gagcgccggggacggctgccgcagcacacgtacctcgactactccnacaccaacttcctg 215 |||||||| || ||||| ||||||||||| |||||||||||||| ||| ||| |||| Sbjct: 139 gagcgccgaggccggctcccgcagcacacctacctcgactactcgatcacgaacctcctc 198 Query: 216 gccgccgtgctgatcgccctcacattcggccagatcggcg 255 || || || || ||||| ||||| ||||| ||| |||||| Sbjct: 199 gctgcggtcctcatcgcgctcaccttcggtcagctcggcg 238
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 331 cgctggcgggcggcgtggtgatc 353 ||||||||||||||||||||||| Sbjct: 1695353 cgctggcgggcggcgtggtgatc 1695375
>gb|BT018631.1| Zea mays clone EL01N0503E08.d mRNA sequence Length = 2126 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 tcgccgtgctggagcgccgggg 166 |||||||||||||||||||||| Sbjct: 276 tcgccgtgctggagcgccgggg 297
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 atcaccctcggcaccgtggcc 371 ||||||||||||||||||||| Sbjct: 1788735 atcaccctcggcaccgtggcc 1788755
>gb|AY812514.1| Schistosoma japonicum SJCHGC07109 protein mRNA, partial cds Length = 819 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 cgtcacaaagatcaaatgtat 68 ||||||||||||||||||||| Sbjct: 128 cgtcacaaagatcaaatgtat 148
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 cgccgtgctgatcgccctcac 238 ||||||||||||||||||||| Sbjct: 294480 cgccgtgctgatcgccctcac 294500
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcgctggcgggcggcgtggt 349 |||||||||||||||||||| Sbjct: 609345 gcgctggcgggcggcgtggt 609326 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcgctggcgggcggcgtggt 349 |||||||||||||||||||| Sbjct: 401679 gcgctggcgggcggcgtggt 401660
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 tcctcgccgtgctggagcgccggg 165 ||||||||| |||||||||||||| Sbjct: 1679927 tcctcgccgagctggagcgccggg 1679950
>emb|AL513547.16| Human DNA sequence from clone RP11-160E12 on chromosome 6 Contains the 5' end of a novel gene, a novel gene, a PHD zinc finger protein XAP135 (XAP135) and three CpG islands, complete sequence Length = 91814 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ctcgggctgatggcggcggc 112 |||||||||||||||||||| Sbjct: 90956 ctcgggctgatggcggcggc 90937
>emb|AL354892.19| Human DNA sequence from clone RP1-266L20 on chromosome 6 Contains two novel genes, the TCTE3 gene for t-complex-associated-testis-expressed 3, the gene for hypothetical protein FLJ11152 (FLJ10507 FLJ11458), a novel gene (FLJ31451), the 5' end of the gene for hypothetical protein FLJ13162 and three CpG islands, complete sequence Length = 79502 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ctcgggctgatggcggcggc 112 |||||||||||||||||||| Sbjct: 1142 ctcgggctgatggcggcggc 1123
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcgctggcgggcggcgtggt 349 |||||||||||||||||||| Sbjct: 266071 gcgctggcgggcggcgtggt 266052 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcgctggcgggcggcgtggt 349 |||||||||||||||||||| Sbjct: 59712 gcgctggcgggcggcgtggt 59693
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcgctggcgggcggcgtggt 349 |||||||||||||||||||| Sbjct: 266129 gcgctggcgggcggcgtggt 266110 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcgctggcgggcggcgtggt 349 |||||||||||||||||||| Sbjct: 59649 gcgctggcgggcggcgtggt 59630
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 gcgccggggacggctgccgcagca 181 |||||||||||||| ||||||||| Sbjct: 112803 gcgccggggacggcggccgcagca 112780
>emb|AL663039.18| Mouse DNA sequence from clone RP23-50H23 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 219899 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aagagcagcctcatctttgg 30 |||||||||||||||||||| Sbjct: 173800 aagagcagcctcatctttgg 173819
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cattcggccagatcggcggc 257 |||||||||||||||||||| Sbjct: 1871714 cattcggccagatcggcggc 1871733
>gb|BC111243.1| Bos taurus cDNA clone MGC:134457 IMAGE:8064474, complete cds Length = 1623 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ctcgggctgatggcggcggc 112 |||||||||||||||||||| Sbjct: 5 ctcgggctgatggcggcggc 24
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 atcggcggcgacacgccgga 268 |||||||||||||||||||| Sbjct: 1513899 atcggcggcgacacgccgga 1513880
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ccgccgtgctgatcgccctc 236 |||||||||||||||||||| Sbjct: 393311 ccgccgtgctgatcgccctc 393292
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 cgtcctcgccgtgctggagc 159 |||||||||||||||||||| Sbjct: 39973 cgtcctcgccgtgctggagc 39992
>gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 map 4P16, complete sequence Length = 145173 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 acactgaactattttctgga 469 |||||||||||||||||||| Sbjct: 111099 acactgaactattttctgga 111118
>gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, complete sequence Length = 194229 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaagatcaaatgtatctggt 73 |||||||||||||||||||| Sbjct: 19855 aaagatcaaatgtatctggt 19836
>gb|BC110323.1| Homo sapiens cDNA clone MGC:111009 IMAGE:5547708, complete cds Length = 1663 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ctcgggctgatggcggcggc 112 |||||||||||||||||||| Sbjct: 42 ctcgggctgatggcggcggc 61
>emb|AJ420510.1|HSA420510 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2120537 Length = 4303 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ctcgggctgatggcggcggc 112 |||||||||||||||||||| Sbjct: 75 ctcgggctgatggcggcggc 94
>gb|L27594.1|HUMBB2R Homo sapiens bradykinin B2 receptor gene sequence Length = 7328 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tctcagggttgtcataggga 447 |||||||||||||||||||| Sbjct: 4656 tctcagggttgtcataggga 4637 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,063,078 Number of Sequences: 3902068 Number of extensions: 3063078 Number of successful extensions: 61768 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60564 Number of HSP's gapped (non-prelim): 1204 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)