ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07b10 |
|---|---|
| Clone Library Name | barley_pub |
>MDGA1_HUMAN (Q8NFP4) MAM domain-containing glycosylphosphatidylinositol anchor| protein 1 precursor (MAM domain-containing protein 3) (GPI and MAM protein) (Glycosylphosphatidylinositol-MAM) (GPIM) Length = 955 Score = 32.0 bits (71), Expect = 0.37 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%) Frame = +1 Query: 100 NGLPIRVLSRRLVKASDPSIKPHVAAFNNLDLYPNSAQGSVTCV--YPKPPTGDFNSVVA 273 NG P R+ R LV +DP + ++ +DL+ S G+ C+ +P P D + V Sbjct: 374 NGKPARMSKRLLVTRNDPELPAVTSSLELIDLH-FSDYGTYLCMASFPGAPVPDLSVEVN 432 Query: 274 AFDAHLPSFLNYFYPMAGRIAVNPSSGMP-ELHC 372 +P ++ GR V G P EL C Sbjct: 433 ISSETVPPTISV---PKGRAVVTVREGSPAELQC 463
>TSCC1_MOUSE (Q8K0G5) Protein TSSC1| Length = 386 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 202 NSAQGSVTCVYPKPPTGDFNSVVAAFDAHL 291 NSAQG+V CV + P GD V++ D+H+ Sbjct: 131 NSAQGNVACVVWE-PMGDGKKVISLADSHI 159
>STRB2_STRGR (P29780) Putative inosamine-phosphate amidinotransferase 2 (EC| 2.1.4.2) (Inosamine-phosphate amidinotransferase II) (Aminocyclitol amidinotransferase) (ADT) Length = 349 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Frame = -2 Query: 234 VDARHRPLCRV----GVEVQVIEGGHMRLDGGVRGFH 136 VD+RHR L RV GV+V ++ H R+ GG GFH Sbjct: 298 VDSRHRELMRVLERHGVDVLPLKLTHARMLGG--GFH 332
>Y213_METKA (Q8TYS9) UPF0282 protein MK0213| Length = 293 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -2 Query: 213 LCRVGVEVQVIEGGHMRLDGGVRGFHQPPAQHPDGQPIAWTRALRQTHR 67 L +GV+ + +G V F QP P+G + + LR THR Sbjct: 128 LDELGVDYEFADGKRFEFGETVLEFSQPLPHGPEGTRLGYVLGLRITHR 176
>SYI_SALTY (Q8ZRZ0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SALTI (Q8Z9N2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SALPA (Q5PDL9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SALCH (Q57TL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SHISS (Q3Z5Y4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SHIFL (Q83MH2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_ECO57 (Q8XA49) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_ECOLI (P00956) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 937 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G +V I G H+ LD G H P PD Sbjct: 310 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 340
>YPU3_RHOCA (P26159) Hypothetical 5.8 kDa protein in puhA 5'region (ORF55)| Length = 55 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%) Frame = +2 Query: 17 SLPDHLRPNSLGALTRNRWVC-------LSARVQAMGCPSG 118 +L H+RPNS R W C ++ R+ AMG G Sbjct: 3 ALKSHVRPNSAAPARRQPWPCGSCVTAPVAVRIGAMGASPG 43
>MAMC1_RAT (P60756) MAM domain-containing protein 1 precursor (MAM| domain-containing glycosylphosphatidylinositol anchor protein 2) Length = 949 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 100 NGLPIRVLSRRLVKASDPSIKPHVAAFNNLDLYPNSAQGSVTCV 231 NG P+R R ++ +DP + P + +DL + G+ TCV Sbjct: 376 NGRPLRSSERMVITQTDPDVSPGTTNLDIIDL-KFTDFGTYTCV 418
>MAMC1_MOUSE (P60755) MAM domain-containing protein 1 precursor (MAM| domain-containing glycosylphosphatidylinositol anchor protein 2) Length = 949 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 100 NGLPIRVLSRRLVKASDPSIKPHVAAFNNLDLYPNSAQGSVTCV 231 NG P+R R ++ +DP + P + +DL + G+ TCV Sbjct: 376 NGRPLRSSERMVITQTDPDVSPGTTNLDIIDL-KFTDFGTYTCV 418
>TSSC1_RAT (Q5PPK9) Protein TSSC1| Length = 386 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 202 NSAQGSVTCVYPKPPTGDFNSVVAAFDAHL 291 N AQG+V CV + P GD V++ D+H+ Sbjct: 131 NGAQGNVACVVWE-PMGDGKKVISLADSHI 159
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 27.7 bits (60), Expect = 7.1 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 11/65 (16%) Frame = +1 Query: 181 NNLDLY---PNSAQGSVTCVYPKPPTGDFN---SVVAAFDAH-----LPSFLNYFYPMAG 327 +N+D+ P S G+V +Y +P + N S FDA+ L L FYPMAG Sbjct: 25 SNIDMILRTPYSHTGAVL-IYKQPDNNEDNIHPSSSMYFDANILIEALSKALVPFYPMAG 83 Query: 328 RIAVN 342 R+ +N Sbjct: 84 RLKIN 88
>MAMC1_HUMAN (Q7Z553) MAM domain-containing protein 1 precursor (MAM| domain-containing glycosylphosphatidylinositol anchor protein 2) Length = 956 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 100 NGLPIRVLSRRLVKASDPSIKPHVAAFNNLDLYPNSAQGSVTCV 231 NG P+R R ++ +DP + P + +DL + G+ TCV Sbjct: 376 NGRPLRSSERMVITQTDPDVSPGTTNLDIIDL-KFTDFGTYTCV 418
>VPX_SIVSP (P19508) VPX protein (X ORF protein)| Length = 112 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%) Frame = +2 Query: 59 TRNRWVCLSARVQAMGCPSGC-------*AGGW*KPLTPP 157 T+ R++CL + M C GC AGGW +P PP Sbjct: 67 TKYRYLCLIQKAMFMHCKKGCRCLGGEHGAGGW-RPGPPP 105
>UL06_HHV7J (P52455) Virion protein U76| Length = 640 Score = 27.3 bits (59), Expect = 9.2 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +1 Query: 169 VAAFNNLDLYPNSAQGSVTCV 231 +A F N+++Y N + G++TC+ Sbjct: 224 IADFTNINIYRNKSDGNITCL 244
>GID_GEOSL (Q74A44) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 434 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 91 SPGNGLPIRVLSRRLVKASDPSIKPHVAAFNNL 189 S G+G + S RLV+ DP++ P V A L Sbjct: 349 SAGSGFLAGINSARLVRGEDPAVPPPVTALGAL 381
>RGL2_MOUSE (Q61193) Ral guanine nucleotide dissociation stimulator-like 2| (RalGDS-like factor) (RAS-associated protein RAB2L) Length = 778 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 111 GQPIAWTRALRQTHRFLVSAPKLFGL 34 G + +T AL THR S P LFGL Sbjct: 111 GADMMFTPALLATHRAFTSTPALFGL 136
>NCAP_INCCA (P08028) Nucleoprotein| Length = 565 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = +1 Query: 73 GLPKRASPGNGLPIRVLSRRLVKAS 147 G+ K+A PG P+R L+RR+VKA+ Sbjct: 232 GIEKKAFPG---PLRALARRVVKAN 253
>IL16_MACMU (O62675) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 630 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 73 GLPKRASPGNGLPIRVLSRRLVKASDPSIKPHVAA 177 GL RAS GLP LS + AS + PH+ A Sbjct: 97 GLRNRASDPRGLPDPALSTQPAPASREHLGPHIRA 131
>IL16_MACFA (O62676) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 630 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 73 GLPKRASPGNGLPIRVLSRRLVKASDPSIKPHVAA 177 GL RAS GLP LS + AS + PH+ A Sbjct: 97 GLRNRASDPRGLPDPALSTQPAPASREHLGPHIRA 131
>AROC_ARATH (P57720) Chorismate synthase, chloroplast precursor (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 436 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = +1 Query: 70 VGLPKRASPGNGLPIRVLSRRLVKASDPSI-KPHVAAFNNLDLYPNSAQGSVTCVYPKPP 246 V LP+ L + + +V+ +P + +AA + + NS G VTC+ P Sbjct: 212 VVLPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAP 271 Query: 247 TGDFNSVVAAFDAHL 291 G V +A L Sbjct: 272 RGLGTPVFDKLEAEL 286
>IL16_CERAE (O62674) Interleukin-16 precursor (IL-16) (Lymphocyte| chemoattractant factor) (LCF) Length = 631 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 73 GLPKRASPGNGLPIRVLSRRLVKASDPSIKPHVAA 177 GL RAS GLP LS + AS + PH+ A Sbjct: 97 GLRNRASDPRGLPDPALSTQPAPASREHLGPHIRA 131
>EXOL_RHIME (P33694) Succinoglycan biosynthesis protein exoL (EC 2.-.-.-)| Length = 403 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -2 Query: 219 RPLCRVGVEVQVIEGGHMRLDGGV-RGFHQPPAQHPDGQP--IAWTRALR 79 RPL +G ++E + +DG V R P P G P I W ALR Sbjct: 160 RPLSGIGAPPMLLENKVLEIDGTVERRTASPAKSPPPGAPWKIGWFGALR 209
>DLTA_LACPL (Q88VM6) D-alanine--poly(phosphoribitol) ligase subunit 1 (EC| 6.1.1.13) (D-alanine-activating enzyme) (DAE) (D-alanine-D-alanyl carrier protein ligase) (DCL) Length = 508 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 163 PHVAAFNNLDLYPNSAQGSVTCVYPKPPTGDFNSVVAA 276 P+ + +D+YP A G PK T DF + AA Sbjct: 194 PYSFDLSVMDVYPTLALGGTLYALPKAVTDDFKQLFAA 231
>SYI_PHOLL (Q7N8X2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 937 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 204 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 112 +G + V+ G H+ LD G H P PD Sbjct: 311 MGFDSPVVLGDHVTLDAGTGAVHTAPGHGPD 341 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,276,873 Number of Sequences: 219361 Number of extensions: 1135443 Number of successful extensions: 2657 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2657 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
