ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 283 bits (143), Expect = 2e-73 Identities = 260/299 (86%) Strand = Plus / Plus Query: 25 cgaccaacaactcgaggctggagaaggcctacgtggcgctgcaggcgctgaagaaggcca 84 |||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 98143 cgacgaacaactcgcggctggagaaggcgtacgtggcgctgcaggcgctgaagcgcgcca 98202 Query: 85 tcacggacgaccccaagaacatgaccaacaactggtgcggccccgacgtgtgcagctacc 144 |||| ||||||||||||||| |||| ||| ||||||||| || || |||||| ||||| Sbjct: 98203 tcaccgacgaccccaagaacctgacgcacagctggtgcgggccggaggtgtgcggctact 98262 Query: 145 acggcgtctactgcgcgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcg 204 |||||| ||||||||| |||||||||||||||| ||||||||||| || ||| ||| | Sbjct: 98263 tcggcgtgtactgcgcggcggcgcccgacgacccgtgcgcgcgcacggtggccggcgtgg 98322 Query: 205 acctcaaccacggcgacatcgccggcacgctgccggaggagctgggcctgctctccgacc 264 ||||||||||||||||| |||||||||| || ||||||||||| ||||| ||| |||||| Sbjct: 98323 acctcaaccacggcgacctcgccggcaccctcccggaggagctcggcctcctcaccgacc 98382 Query: 265 tcgccgtcttccacctcaactcccacaggttctgcggcgcgctcccggacgcgctccgc 323 ||||||||||||||||||||||| || | ||||||||| | ||||| ||| | |||||| Sbjct: 98383 tcgccgtcttccacctcaactccaaccgcttctgcggctccctccccgactccctccgc 98441
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 283 bits (143), Expect = 2e-73 Identities = 260/299 (86%) Strand = Plus / Minus Query: 25 cgaccaacaactcgaggctggagaaggcctacgtggcgctgcaggcgctgaagaaggcca 84 |||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 32781398 cgacgaacaactcgcggctggagaaggcgtacgtggcgctgcaggcgctgaagcgcgcca 32781339 Query: 85 tcacggacgaccccaagaacatgaccaacaactggtgcggccccgacgtgtgcagctacc 144 |||| ||||||||||||||| |||| ||| ||||||||| || || |||||| ||||| Sbjct: 32781338 tcaccgacgaccccaagaacctgacgcacagctggtgcgggccggaggtgtgcggctact 32781279 Query: 145 acggcgtctactgcgcgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcg 204 |||||| ||||||||| |||||||||||||||| ||||||||||| || ||| ||| | Sbjct: 32781278 tcggcgtgtactgcgcggcggcgcccgacgacccgtgcgcgcgcacggtggccggcgtgg 32781219 Query: 205 acctcaaccacggcgacatcgccggcacgctgccggaggagctgggcctgctctccgacc 264 ||||||||||||||||| |||||||||| || ||||||||||| ||||| ||| |||||| Sbjct: 32781218 acctcaaccacggcgacctcgccggcaccctcccggaggagctcggcctcctcaccgacc 32781159 Query: 265 tcgccgtcttccacctcaactcccacaggttctgcggcgcgctcccggacgcgctccgc 323 ||||||||||||||||||||||| || | ||||||||| | ||||| ||| | |||||| Sbjct: 32781158 tcgccgtcttccacctcaactccaaccgcttctgcggctccctccccgactccctccgc 32781100 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Minus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 24290060 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 24290001 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 24290000 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 24289941 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 24289940 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 24289881 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 24289880 acatcgccgg 24289871
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 283 bits (143), Expect = 2e-73 Identities = 260/299 (86%) Strand = Plus / Minus Query: 25 cgaccaacaactcgaggctggagaaggcctacgtggcgctgcaggcgctgaagaaggcca 84 |||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 32871908 cgacgaacaactcgcggctggagaaggcgtacgtggcgctgcaggcgctgaagcgcgcca 32871849 Query: 85 tcacggacgaccccaagaacatgaccaacaactggtgcggccccgacgtgtgcagctacc 144 |||| ||||||||||||||| |||| ||| ||||||||| || || |||||| ||||| Sbjct: 32871848 tcaccgacgaccccaagaacctgacgcacagctggtgcgggccggaggtgtgcggctact 32871789 Query: 145 acggcgtctactgcgcgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcg 204 |||||| ||||||||| |||||||||||||||| ||||||||||| || ||| ||| | Sbjct: 32871788 tcggcgtgtactgcgcggcggcgcccgacgacccgtgcgcgcgcacggtggccggcgtgg 32871729 Query: 205 acctcaaccacggcgacatcgccggcacgctgccggaggagctgggcctgctctccgacc 264 ||||||||||||||||| |||||||||| || ||||||||||| ||||| ||| |||||| Sbjct: 32871728 acctcaaccacggcgacctcgccggcaccctcccggaggagctcggcctcctcaccgacc 32871669 Query: 265 tcgccgtcttccacctcaactcccacaggttctgcggcgcgctcccggacgcgctccgc 323 ||||||||||||||||||||||| || | ||||||||| | ||||| ||| | |||||| Sbjct: 32871668 tcgccgtcttccacctcaactccaaccgcttctgcggctccctccccgactccctccgc 32871610 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Minus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 24207529 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 24207470 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 24207469 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 24207410 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 24207409 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 24207350 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 24207349 acatcgccgg 24207340
>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full insert sequence Length = 1408 Score = 283 bits (143), Expect = 2e-73 Identities = 260/299 (86%) Strand = Plus / Plus Query: 25 cgaccaacaactcgaggctggagaaggcctacgtggcgctgcaggcgctgaagaaggcca 84 |||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 231 cgacgaacaactcgcggctggagaaggcgtacgtggcgctgcaggcgctgaagcgcgcca 290 Query: 85 tcacggacgaccccaagaacatgaccaacaactggtgcggccccgacgtgtgcagctacc 144 |||| ||||||||||||||| |||| ||| ||||||||| || || |||||| ||||| Sbjct: 291 tcaccgacgaccccaagaacctgacgcacagctggtgcgggccggaggtgtgcggctact 350 Query: 145 acggcgtctactgcgcgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcg 204 |||||| ||||||||| |||||||||||||||| ||||||||||| || ||| ||| | Sbjct: 351 tcggcgtgtactgcgcggcggcgcccgacgacccgtgcgcgcgcacggtggccggcgtgg 410 Query: 205 acctcaaccacggcgacatcgccggcacgctgccggaggagctgggcctgctctccgacc 264 ||||||||||||||||| |||||||||| || ||||||||||| ||||| ||| |||||| Sbjct: 411 acctcaaccacggcgacctcgccggcaccctcccggaggagctcggcctcctcaccgacc 470 Query: 265 tcgccgtcttccacctcaactcccacaggttctgcggcgcgctcccggacgcgctccgc 323 ||||||||||||||||||||||| || | ||||||||| | ||||| ||| | |||||| Sbjct: 471 tcgccgtcttccacctcaactccaaccgcttctgcggctccctccccgactccctccgc 529
>ref|XM_476821.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1301 Score = 161 bits (81), Expect = 2e-36 Identities = 213/257 (82%) Strand = Plus / Plus Query: 54 tacgtggcgctgcaggcgctgaagaaggccatcacggacgaccccaagaacatgaccaac 113 ||||||||||||||||||||| | | | |||| ||||||||||||||| | ||| | Sbjct: 194 tacgtggcgctgcaggcgctgcggcggcgcgtcaccgacgaccccaagaacctcaccggc 253 Query: 114 aactggtgcggccccgacgtgtgcagctaccacggcgtctactgcgcgacggcgcccgac 173 ||||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||| Sbjct: 254 gggtggtgcggccccgacgtgtgccgctacttcggcgtctactgcgccgccgcgccggac 313 Query: 174 gacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacg 233 ||||| ||||| |||||||||| | |||||||||||||||||||| |||||| ||| Sbjct: 314 gacccgtgcgccgccaccgtcgccggcatcgacctcaaccacggcgacctcgccgccacc 373 Query: 234 ctgccggaggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacagg 293 || || || ||||| ||||| ||| ||||||||||||| |||||||||||||| || | Sbjct: 374 ctccccgacgagctcggcctcctcaccgacctcgccgtgctccacctcaactccaaccgc 433 Query: 294 ttctgcggcgcgctccc 310 |||| |||||||||||| Sbjct: 434 ttctccggcgcgctccc 450
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 161 bits (81), Expect = 2e-36 Identities = 213/257 (82%) Strand = Plus / Minus Query: 54 tacgtggcgctgcaggcgctgaagaaggccatcacggacgaccccaagaacatgaccaac 113 ||||||||||||||||||||| | | | |||| ||||||||||||||| | ||| | Sbjct: 4062812 tacgtggcgctgcaggcgctgcggcggcgcgtcaccgacgaccccaagaacctcaccggc 4062753 Query: 114 aactggtgcggccccgacgtgtgcagctaccacggcgtctactgcgcgacggcgcccgac 173 ||||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||| Sbjct: 4062752 gggtggtgcggccccgacgtgtgccgctacttcggcgtctactgcgccgccgcgccggac 4062693 Query: 174 gacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacg 233 ||||| ||||| |||||||||| | |||||||||||||||||||| |||||| ||| Sbjct: 4062692 gacccgtgcgccgccaccgtcgccggcatcgacctcaaccacggcgacctcgccgccacc 4062633 Query: 234 ctgccggaggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacagg 293 || || || ||||| ||||| ||| ||||||||||||| |||||||||||||| || | Sbjct: 4062632 ctccccgacgagctcggcctcctcaccgacctcgccgtgctccacctcaactccaaccgc 4062573 Query: 294 ttctgcggcgcgctccc 310 |||| |||||||||||| Sbjct: 4062572 ttctccggcgcgctccc 4062556
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 161 bits (81), Expect = 2e-36 Identities = 213/257 (82%) Strand = Plus / Minus Query: 54 tacgtggcgctgcaggcgctgaagaaggccatcacggacgaccccaagaacatgaccaac 113 ||||||||||||||||||||| | | | |||| ||||||||||||||| | ||| | Sbjct: 55670 tacgtggcgctgcaggcgctgcggcggcgcgtcaccgacgaccccaagaacctcaccggc 55611 Query: 114 aactggtgcggccccgacgtgtgcagctaccacggcgtctactgcgcgacggcgcccgac 173 ||||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||| Sbjct: 55610 gggtggtgcggccccgacgtgtgccgctacttcggcgtctactgcgccgccgcgccggac 55551 Query: 174 gacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacg 233 ||||| ||||| |||||||||| | |||||||||||||||||||| |||||| ||| Sbjct: 55550 gacccgtgcgccgccaccgtcgccggcatcgacctcaaccacggcgacctcgccgccacc 55491 Query: 234 ctgccggaggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacagg 293 || || || ||||| ||||| ||| ||||||||||||| |||||||||||||| || | Sbjct: 55490 ctccccgacgagctcggcctcctcaccgacctcgccgtgctccacctcaactccaaccgc 55431 Query: 294 ttctgcggcgcgctccc 310 |||| |||||||||||| Sbjct: 55430 ttctccggcgcgctccc 55414
>dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D11, full insert sequence Length = 1302 Score = 161 bits (81), Expect = 2e-36 Identities = 213/257 (82%) Strand = Plus / Plus Query: 54 tacgtggcgctgcaggcgctgaagaaggccatcacggacgaccccaagaacatgaccaac 113 ||||||||||||||||||||| | | | |||| ||||||||||||||| | ||| | Sbjct: 194 tacgtggcgctgcaggcgctgcggcggcgcgtcaccgacgaccccaagaacctcaccggc 253 Query: 114 aactggtgcggccccgacgtgtgcagctaccacggcgtctactgcgcgacggcgcccgac 173 ||||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||| Sbjct: 254 gggtggtgcggccccgacgtgtgccgctacttcggcgtctactgcgccgccgcgccggac 313 Query: 174 gacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacg 233 ||||| ||||| |||||||||| | |||||||||||||||||||| |||||| ||| Sbjct: 314 gacccgtgcgccgccaccgtcgccggcatcgacctcaaccacggcgacctcgccgccacc 373 Query: 234 ctgccggaggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacagg 293 || || || ||||| ||||| ||| ||||||||||||| |||||||||||||| || | Sbjct: 374 ctccccgacgagctcggcctcctcaccgacctcgccgtgctccacctcaactccaaccgc 433 Query: 294 ttctgcggcgcgctccc 310 |||| |||||||||||| Sbjct: 434 ttctccggcgcgctccc 450
>ref|XM_468996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1447 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 241 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 300 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 301 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 360 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 361 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 420 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 421 acatcgccgg 430
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 90564 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 90623 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 90624 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 90683 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 90684 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 90743 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 90744 acatcgccgg 90753
>dbj|AK109350.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E06, full insert sequence Length = 1511 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 275 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 334 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 335 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 394 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 395 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 454 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 455 acatcgccgg 464
>dbj|AK105732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H06, full insert sequence Length = 1642 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 275 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 334 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 335 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 394 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 395 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 454 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 455 acatcgccgg 464
>dbj|AK068135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133O22, full insert sequence Length = 1451 Score = 107 bits (54), Expect = 2e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 40 ggctggagaaggcctacgtggcgctgcaggcgctgaagaaggccatcacggacgacccca 99 |||||||| ||| ||||||||| | |||||| |||| | |||||||| || ||||||| Sbjct: 271 ggctggaggcggcgtacgtggcgttccaggcgtggaagcacgccatcaccgaggacccca 330 Query: 100 agaacatgaccaacaactggtgcggccccgacgtgtgcagctaccacggcgtctactgcg 159 ||||| |||| | | |||||||| || |||||||| |||| |||||||||||||| Sbjct: 331 agaacctgacggaggattggtgcgggccgttcgtgtgcaactacaccggcgtctactgcg 390 Query: 160 cgacggcgcccgacgacccctgcgcgcgcaccgtcgcctccgtcgacctcaaccacggcg 219 || ||||||||||||| || || | |||||||||| |||||||||||||||||||| Sbjct: 391 cggcggcgcccgacgatccgcacgtcctcaccgtcgccggcgtcgacctcaaccacggcg 450 Query: 220 acatcgccgg 229 |||||||||| Sbjct: 451 acatcgccgg 460
>dbj|AK061561.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D10, full insert sequence Length = 1122 Score = 89.7 bits (45), Expect = 6e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 133 tgtgcagctaccacggcgtctactgcgcgacggcgcccgacgacccctgcgcgcgcaccg 192 |||||| |||| |||||||||||||||| ||||||||||||| || || | ||||| Sbjct: 1 tgtgcaactacaccggcgtctactgcgcggcggcgcccgacgatccgcacgtcctcaccg 60 Query: 193 tcgcctccgtcgacctcaaccacggcgacatcgccgg 229 ||||| |||||||||||||||||||||||||||||| Sbjct: 61 tcgccggcgtcgacctcaaccacggcgacatcgccgg 97
>ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2207 Score = 85.7 bits (43), Expect = 9e-14 Identities = 103/123 (83%) Strand = Plus / Plus Query: 190 ccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctgg 249 |||||||| |||||||||||||||||||||||||||||| ||||| ||||| | Sbjct: 392 ccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcg 451 Query: 250 gcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgcgctcc 309 |||||||| |||||||||| | |||||||||||||| || | |||||||||| ||||| Sbjct: 452 gcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcc 511 Query: 310 cgg 312 ||| Sbjct: 512 cgg 514
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 85.7 bits (43), Expect = 9e-14 Identities = 103/123 (83%) Strand = Plus / Minus Query: 190 ccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctgg 249 |||||||| |||||||||||||||||||||||||||||| ||||| ||||| | Sbjct: 4180022 ccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcg 4179963 Query: 250 gcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgcgctcc 309 |||||||| |||||||||| | |||||||||||||| || | |||||||||| ||||| Sbjct: 4179962 gcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcc 4179903 Query: 310 cgg 312 ||| Sbjct: 4179902 cgg 4179900 Score = 75.8 bits (38), Expect = 8e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctggg 250 ||||||||||||||| |||||||||| |||||| || ||| || || || ||||| || Sbjct: 23281764 cgtcgcctccgtcgatctcaaccacgccgacatggcgggccacctccccgacgagctcgg 23281823 Query: 251 cctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgc 304 ||||||| ||||||||||||| ||||| ||||||| || | ||||||||||| Sbjct: 23281824 cctgctcgccgacctcgccgtgctccacgccaactccaaccgcttctgcggcgc 23281877 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 249 ggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 ||||| || |||||||||||||| |||||||||||||| || | |||||||||| Sbjct: 14422072 ggcctcctgtccgacctcgccgtgctccacctcaactccaaccgcttctgcggcg 14422018
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 85.7 bits (43), Expect = 9e-14 Identities = 103/123 (83%) Strand = Plus / Minus Query: 190 ccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctgg 249 |||||||| |||||||||||||||||||||||||||||| ||||| ||||| | Sbjct: 17989 ccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcg 17930 Query: 250 gcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgcgctcc 309 |||||||| |||||||||| | |||||||||||||| || | |||||||||| ||||| Sbjct: 17929 gcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcc 17870 Query: 310 cgg 312 ||| Sbjct: 17869 cgg 17867
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 85.7 bits (43), Expect = 9e-14 Identities = 103/123 (83%) Strand = Plus / Minus Query: 190 ccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctgg 249 |||||||| |||||||||||||||||||||||||||||| ||||| ||||| | Sbjct: 126993 ccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcg 126934 Query: 250 gcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgcgctcc 309 |||||||| |||||||||| | |||||||||||||| || | |||||||||| ||||| Sbjct: 126933 gcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcc 126874 Query: 310 cgg 312 ||| Sbjct: 126873 cgg 126871
>dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full insert sequence Length = 2207 Score = 85.7 bits (43), Expect = 9e-14 Identities = 103/123 (83%) Strand = Plus / Plus Query: 190 ccgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctgg 249 |||||||| |||||||||||||||||||||||||||||| ||||| ||||| | Sbjct: 392 ccgtcgccggcgtcgacctcaaccacggcgacatcgccgggtacctgccccccgagctcg 451 Query: 250 gcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgcgctcc 309 |||||||| |||||||||| | |||||||||||||| || | |||||||||| ||||| Sbjct: 452 gcctgctcgccgacctcgcgctgctccacctcaactccaaccgcttctgcggcgtgctcc 511 Query: 310 cgg 312 ||| Sbjct: 512 cgg 514
>ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1713 Score = 75.8 bits (38), Expect = 8e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctggg 250 ||||||||||||||| |||||||||| |||||| || ||| || || || ||||| || Sbjct: 357 cgtcgcctccgtcgatctcaaccacgccgacatggcgggccacctccccgacgagctcgg 416 Query: 251 cctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgc 304 ||||||| ||||||||||||| ||||| ||||||| || | ||||||||||| Sbjct: 417 cctgctcgccgacctcgccgtgctccacgccaactccaaccgcttctgcggcgc 470
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 75.8 bits (38), Expect = 8e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctggg 250 ||||||||||||||| |||||||||| |||||| || ||| || || || ||||| || Sbjct: 7462 cgtcgcctccgtcgatctcaaccacgccgacatggcgggccacctccccgacgagctcgg 7521 Query: 251 cctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgc 304 ||||||| ||||||||||||| ||||| ||||||| || | ||||||||||| Sbjct: 7522 cctgctcgccgacctcgccgtgctccacgccaactccaaccgcttctgcggcgc 7575
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 75.8 bits (38), Expect = 8e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctggg 250 ||||||||||||||| |||||||||| |||||| || ||| || || || ||||| || Sbjct: 68506 cgtcgcctccgtcgatctcaaccacgccgacatggcgggccacctccccgacgagctcgg 68565 Query: 251 cctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgc 304 ||||||| ||||||||||||| ||||| ||||||| || | ||||||||||| Sbjct: 68566 cctgctcgccgacctcgccgtgctccacgccaactccaaccgcttctgcggcgc 68619
>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full insert sequence Length = 1985 Score = 75.8 bits (38), Expect = 8e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctggg 250 ||||||||||||||| |||||||||| |||||| || ||| || || || ||||| || Sbjct: 416 cgtcgcctccgtcgatctcaaccacgccgacatggcgggccacctccccgacgagctcgg 475 Query: 251 cctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgc 304 ||||||| ||||||||||||| ||||| ||||||| || | ||||||||||| Sbjct: 476 cctgctcgccgacctcgccgtgctccacgccaactccaaccgcttctgcggcgc 529
>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full insert sequence Length = 2042 Score = 75.8 bits (38), Expect = 8e-11 Identities = 95/114 (83%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccggcacgctgccggaggagctggg 250 ||||||||||||||| |||||||||| |||||| || ||| || || || ||||| || Sbjct: 415 cgtcgcctccgtcgatctcaaccacgccgacatggcgggccacctccccgacgagctcgg 474 Query: 251 cctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcgc 304 ||||||| ||||||||||||| ||||| ||||||| || | ||||||||||| Sbjct: 475 cctgctcgccgacctcgccgtgctccacgccaactccaaccgcttctgcggcgc 528
>gb|AY106034.1| Zea mays PCO099903 mRNA sequence Length = 687 Score = 69.9 bits (35), Expect = 5e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 245 gctgggcctgctctccgacctcgccgtcttccacctcaactcc 287 ||||||||| || |||||||||||||||||||||||||||||| Sbjct: 8 gctgggcctcctgtccgacctcgccgtcttccacctcaactcc 50
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 113 caactggtgcggccccgacgtgtgcagctaccacggcgtctactgcgcg 161 |||||||| |||||||||||||||| ||||| ||||||| | ||||||| Sbjct: 29238835 caactggtccggccccgacgtgtgcggctacaacggcgtgttctgcgcg 29238883 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 202 tcgacctcaaccacggcgacatcgccgg 229 ||||||||||||||| |||||||||||| Sbjct: 29238924 tcgacctcaaccacgccgacatcgccgg 29238951 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 274 tccacctcaactcccacaggttctgcggcgcgctccc 310 |||||||||||||| || | |||||||||| |||||| Sbjct: 29238999 tccacctcaactccaaccgcttctgcggcgtgctccc 29239035
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 113 caactggtgcggccccgacgtgtgcagctaccacggcgtctactgcgcg 161 |||||||| |||||||||||||||| ||||| ||||||| | ||||||| Sbjct: 1633 caactggtccggccccgacgtgtgcggctacaacggcgtgttctgcgcg 1681 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 202 tcgacctcaaccacggcgacatcgccgg 229 ||||||||||||||| |||||||||||| Sbjct: 1722 tcgacctcaaccacgccgacatcgccgg 1749 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 274 tccacctcaactcccacaggttctgcggcgcgctccc 310 |||||||||||||| || | |||||||||| |||||| Sbjct: 1797 tccacctcaactccaaccgcttctgcggcgtgctccc 1833
>emb|Z34465.1|ZMEXTENS Z.mays (B73) gene for extensin-like protein Length = 4431 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 242 ggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcgg 301 |||||| ||||||||| ||||||||||| |||||||| ||||| || || | |||||||| Sbjct: 898 ggagctcggcctgctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcgg 957 Query: 302 c 302 | Sbjct: 958 c 958
>gb|AY109630.1| Zea mays CL844_2 mRNA sequence Length = 3567 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 242 ggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcgg 301 |||||| ||||||||| ||||||||||| |||||||| ||||| || || | |||||||| Sbjct: 435 ggagctcggcctgctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcgg 494 Query: 302 c 302 | Sbjct: 495 c 495
>gb|AY109350.1| Zea mays CL844_1 mRNA sequence Length = 4275 Score = 56.0 bits (28), Expect = 8e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 243 gagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggc 302 ||||| ||||||||| ||||||||||| |||||||| ||||| || || | ||||||||| Sbjct: 436 gagctcggcctgctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcggc 495
>gb|AF159297.2| Zea mays pollen extensin-like protein (Pex2) gene, complete cds Length = 3601 Score = 56.0 bits (28), Expect = 8e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 243 gagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggc 302 ||||| ||||||||| ||||||||||| |||||||| ||||| || || | ||||||||| Sbjct: 845 gagctcggcctgctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcggc 904
>ref|NM_193983.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1512 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 249 ggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 ||||| || |||||||||||||| |||||||||||||| || | |||||||||| Sbjct: 403 ggcctcctgtccgacctcgccgtgctccacctcaactccaaccgcttctgcggcg 457
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 249 ggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 ||||| || |||||||||||||| |||||||||||||| || | |||||||||| Sbjct: 83469 ggcctcctgtccgacctcgccgtgctccacctcaactccaaccgcttctgcggcg 83415
>dbj|AK064742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D10, full insert sequence Length = 1799 Score = 54.0 bits (27), Expect = 3e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 249 ggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 ||||| || |||||||||||||| |||||||||||||| || | |||||||||| Sbjct: 496 ggcctcctgtccgacctcgccgtgctccacctcaactccaaccgcttctgcggcg 550
>ref|XM_464070.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2085 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 254 gctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 |||| ||||||||||| || |||||||||||||| || | |||||||||| Sbjct: 390 gctccccgacctcgccctcatccacctcaactccaaccgcttctgcggcg 439 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 204 gacctcaaccacggcgacatcgccgg 229 ||||||||||||| |||||||||||| Sbjct: 337 gacctcaaccacgccgacatcgccgg 362 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 140 ctaccacggcgtctactgcgcgacggcgcccg 171 |||| ||||||||||||||||| || |||||| Sbjct: 261 ctacaacggcgtctactgcgcgccgtcgcccg 292
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 254 gctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 |||| ||||||||||| || |||||||||||||| || | |||||||||| Sbjct: 2022916 gctccccgacctcgccctcatccacctcaactccaaccgcttctgcggcg 2022867 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 204 gacctcaaccacggcgacatcgccgg 229 ||||||||||||| |||||||||||| Sbjct: 2022969 gacctcaaccacgccgacatcgccgg 2022944 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 140 ctaccacggcgtctactgcgcgacggcgcccg 171 |||| ||||||||||||||||| || |||||| Sbjct: 2023045 ctacaacggcgtctactgcgcgccgtcgcccg 2023014
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 254 gctctccgacctcgccgtcttccacctcaactcccacaggttctgcggcg 303 |||| ||||||||||| || |||||||||||||| || | |||||||||| Sbjct: 73124 gctccccgacctcgccctcatccacctcaactccaaccgcttctgcggcg 73075 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 204 gacctcaaccacggcgacatcgccgg 229 ||||||||||||| |||||||||||| Sbjct: 73177 gacctcaaccacgccgacatcgccgg 73152 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 140 ctaccacggcgtctactgcgcgacggcgcccg 171 |||| ||||||||||||||||| || |||||| Sbjct: 73253 ctacaacggcgtctactgcgcgccgtcgcccg 73222
>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0485F09, complete sequence Length = 161276 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Minus Query: 242 ggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcgg 301 |||||| ||||| ||| ||||||||||| |||||||| ||||| || || | |||||||| Sbjct: 59720 ggagctcggcctcctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcgg 59661 Query: 302 c 302 | Sbjct: 59660 c 59660
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Minus Query: 242 ggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcgg 301 |||||| ||||| ||| ||||||||||| |||||||| ||||| || || | |||||||| Sbjct: 25452829 ggagctcggcctcctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcgg 25452770 Query: 302 c 302 | Sbjct: 25452769 c 25452769
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Minus Query: 242 ggagctgggcctgctctccgacctcgccgtcttccacctcaactcccacaggttctgcgg 301 |||||| ||||| ||| ||||||||||| |||||||| ||||| || || | |||||||| Sbjct: 25771499 ggagctcggcctcctcaccgacctcgccttcttccacatcaacaccaaccgcttctgcgg 25771440 Query: 302 c 302 | Sbjct: 25771439 c 25771439 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 299 cggcgcgctcccggacgcgctcc 321 ||||||||||||||||||||||| Sbjct: 5077014 cggcgcgctcccggacgcgctcc 5076992
>ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1245 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 204 gacctcaaccacggcgacatcgc 226 ||||||||||||||||||||||| Sbjct: 310 gacctcaaccacggcgacatcgc 332
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 204 gacctcaaccacggcgacatcgc 226 ||||||||||||||||||||||| Sbjct: 125206 gacctcaaccacggcgacatcgc 125184
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.076 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccgg 229 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 21747237 cgtcgccggcgtcgacctcaacggcggcgacatcgccgg 21747199 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctccgctccctcccgtctcctccc 341 |||||| ||||||||||||||||| Sbjct: 19349475 ctccgccccctcccgtctcctccc 19349498
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 204 gacctcaaccacggcgacatcgc 226 ||||||||||||||||||||||| Sbjct: 4757201 gacctcaaccacggcgacatcgc 4757179 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gggcgccgccggcgaccaac 32 |||||||||||||||||||| Sbjct: 10067259 gggcgccgccggcgaccaac 10067240 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 tacgtggcgctgcaggcgctgaag 77 |||| ||||||||||||||||||| Sbjct: 5390601 tacgaggcgctgcaggcgctgaag 5390624
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 146 cggcgtctactgcgcgacggcgc 168 ||||||||||||||||||||||| Sbjct: 449918 cggcgtctactgcgcgacggcgc 449940
>dbj|AK106650.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F09, full insert sequence Length = 1720 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 299 cggcgcgctcccggacgcgctcc 321 ||||||||||||||||||||||| Sbjct: 267 cggcgcgctcccggacgcgctcc 289
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.076 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccgg 229 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 21675582 cgtcgccggcgtcgacctcaacggcggcgacatcgccgg 21675544 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctccgctccctcccgtctcctccc 341 |||||| ||||||||||||||||| Sbjct: 19275702 ctccgccccctcccgtctcctccc 19275725
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 46.1 bits (23), Expect = 0.076 Identities = 35/39 (89%) Strand = Plus / Plus Query: 191 cgtcgcctccgtcgacctcaaccacggcgacatcgccgg 229 ||||||| ||||||||||||| ||||||||||||||| Sbjct: 65314 cgtcgccggcgtcgacctcaacggcggcgacatcgccgg 65352
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 204 gacctcaaccacggcgacatcgc 226 ||||||||||||||||||||||| Sbjct: 29609 gacctcaaccacggcgacatcgc 29587
>gb|AC101687.11| Mus musculus chromosome 8, clone RP23-205D7, complete sequence Length = 185997 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 33 aactcgaggctggagaaggcct 54 |||||||||||||||||||||| Sbjct: 166435 aactcgaggctggagaaggcct 166414
>gb|AC158348.4| Mus musculus chromosome 8, clone RP24-134G9, complete sequence Length = 175836 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 33 aactcgaggctggagaaggcct 54 |||||||||||||||||||||| Sbjct: 74464 aactcgaggctggagaaggcct 74443
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 89 ggacgaccccaagaacatgacc 110 |||||||||||||||||||||| Sbjct: 125594 ggacgaccccaagaacatgacc 125573
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 ctgaagaaggccatcacggacg 93 |||||||||||||||||||||| Sbjct: 50824 ctgaagaaggccatcacggacg 50803
>emb|Z97652.9|HS395F10 Human DNA sequence from clone LA16c-395F10 on chromosome 16, complete sequence Length = 28320 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccctcccgtctcctcccacga 345 ||||||||||||||||||||| Sbjct: 4928 ccctcccgtctcctcccacga 4908
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 cgcagccggtgggggcgccgccggc 25 ||||||||||| ||||||||||||| Sbjct: 205238 cgcagccggtgcgggcgccgccggc 205214
>gb|AE006639.1| Homo sapiens 16p13.3 sequence section 7 of 8 Length = 270150 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 ccctcccgtctcctcccacga 345 ||||||||||||||||||||| Sbjct: 1886 ccctcccgtctcctcccacga 1866
>gb|AC156357.3| Carollia perspicillata clone 84E8, complete sequence Length = 64472 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 ccacctcaactcccacaggtt 295 ||||||||||||||||||||| Sbjct: 42195 ccacctcaactcccacaggtt 42175
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 caaccacggcgacatcgccgg 229 ||||||||||||||||||||| Sbjct: 6656952 caaccacggcgacatcgccgg 6656932 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 cgacctcaaccacggcgacatcgc 226 |||||||||||||||||| ||||| Sbjct: 6162894 cgacctcaaccacggcgagatcgc 6162917
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 tacgtggcgctgcaggcgctgaag 77 |||| ||||||||||||||||||| Sbjct: 77275 tacgaggcgctgcaggcgctgaag 77298
>gb|AY177757.1| Burkholderia pseudomallei 08 two-partner secretion system gene cluster, partial sequence Length = 20237 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 acggcgacatcgccggcacgctgc 237 |||||| ||||||||||||||||| Sbjct: 2769 acggcggcatcgccggcacgctgc 2792
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcgcgacggcgcccgacgac 176 |||||||||||||||||||| Sbjct: 3158870 gcgcgacggcgcccgacgac 3158851 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgctgccggaggagctgggc 251 |||||||||||||||||||| Sbjct: 977928 cgctgccggaggagctgggc 977947
>gb|AC137612.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022B03, complete sequence Length = 151814 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gggcgccgccggcgaccaac 32 |||||||||||||||||||| Sbjct: 52775 gggcgccgccggcgaccaac 52756
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgctgccggaggagctgggc 251 |||||||||||||||||||| Sbjct: 2019729 cgctgccggaggagctgggc 2019748 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gcgcgacggcgcccgacgac 176 |||||||||||||||||||| Sbjct: 1642143 gcgcgacggcgcccgacgac 1642162
>ref|XM_801732.1| Trypanosoma cruzi strain CL Brener DNA-repair protein (Tc00.1047053510665.40) partial mRNA Length = 2430 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 acctcgccgtcttccacctc 281 |||||||||||||||||||| Sbjct: 515 acctcgccgtcttccacctc 496
>gb|AC023792.12| Homo sapiens 3 BAC CTC-503A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 64414 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 tccctcccgtctcctcccac 343 |||||||||||||||||||| Sbjct: 613 tccctcccgtctcctcccac 594
>gb|AC135253.2| Homo sapiens 3 BAC RP11-324L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154492 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 tccctcccgtctcctcccac 343 |||||||||||||||||||| Sbjct: 19021 tccctcccgtctcctcccac 19002
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcgcgacggcgcccgacgac 176 |||||||||||||||||||| Sbjct: 323778 gcgcgacggcgcccgacgac 323759
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10, complete sequence Length = 102275 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 tacgtggcgctgcaggcgctgaag 77 |||| ||||||||||||||||||| Sbjct: 76115 tacgaggcgctgcaggcgctgaag 76138
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cgctgccggaggagctgggc 251 |||||||||||||||||||| Sbjct: 2357038 cgctgccggaggagctgggc 2357019 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gcgcgacggcgcccgacgac 176 |||||||||||||||||||| Sbjct: 1529222 gcgcgacggcgcccgacgac 1529241
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gcagctaccacggcgtctac 155 |||||||||||||||||||| Sbjct: 2835420 gcagctaccacggcgtctac 2835401
>gb|AC114477.2| Homo sapiens chromosome 3 clone RP11-1037D22, complete sequence Length = 179190 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 tccctcccgtctcctcccac 343 |||||||||||||||||||| Sbjct: 125185 tccctcccgtctcctcccac 125166
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ggcgctgcaggcgctgaaga 78 |||||||||||||||||||| Sbjct: 2288321 ggcgctgcaggcgctgaaga 2288302
>gb|AE009811.1|AE009811 Pyrobaculum aerophilum strain IM2 section 66 of 201 of the complete genome Length = 14032 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 gagctgggcctgctctccgacctcgccg 270 |||||| |||||| |||||||||||||| Sbjct: 632 gagctgagcctgccctccgacctcgccg 659
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 gcggcgcgctcccggacgcgctcc 321 |||||| ||||||||||||||||| Sbjct: 89412 gcggcgagctcccggacgcgctcc 89389
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ccctgcgcgcgcaccgtcgc 196 |||||||||||||||||||| Sbjct: 2257854 ccctgcgcgcgcaccgtcgc 2257873
>gb|AF164027.1|AF164027 Leishmania tropica surface antigen P2 (PSA-2) gene, complete cds Length = 1881 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 ggcgacatcgccggcacgctgccg 239 ||||||||| |||||||||||||| Sbjct: 646 ggcgacatcaccggcacgctgccg 669
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 gccggtgggggcgccgccggcgac 28 ||||||| |||||||||||||||| Sbjct: 3033527 gccggtgagggcgccgccggcgac 3033504
>emb|Y14327.1|SEY14327 Saccharopolyspora erythraea partial ermE and eryBIII genes and eryB gene Length = 2760 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 aggcgctgaagaaggccatc 86 |||||||||||||||||||| Sbjct: 1649 aggcgctgaagaaggccatc 1630
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acgtggcgctgcaggcgctg 74 |||||||||||||||||||| Sbjct: 313392 acgtggcgctgcaggcgctg 313373
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gcagctaccacggcgtctac 155 |||||||||||||||||||| Sbjct: 2857274 gcagctaccacggcgtctac 2857255
>emb|AJ580965.1|SHE580965 Suid herpesvirus 1 strain Kaplan UL5 gene, UL4 gene, UL6 gene (partial), UL3.5 gene, UL3 gene and UL2 gene (partial) Length = 5200 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 gcggcgcgctcccggacgcgctcc 321 |||||| ||||||||||||||||| Sbjct: 493 gcggcgagctcccggacgcgctcc 470
>emb|BX119952.3|CNS09S4V Oryza sativa chromosome 12, . BAC OSJNBb0022A20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131975 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctccgctccctcccgtctcctccc 341 |||||| ||||||||||||||||| Sbjct: 55166 ctccgccccctcccgtctcctccc 55189
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctccgctccctcccgtctcctccc 341 |||||| ||||||||||||||||| Sbjct: 27169 ctccgccccctcccgtctcctccc 27192
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 agaacatgaccaacaactgg 119 |||||||||||||||||||| Sbjct: 1499771 agaacatgaccaacaactgg 1499790
>gb|M38342.1|PPTKBG31 Poa pratensis pollen allergen (KBG 31) mRNA, complete cds Length = 1322 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 gcgctgaagaaggccatcac 88 |||||||||||||||||||| Sbjct: 988 gcgctgaagaaggccatcac 1007
>gb|L20708.1|SH1UL45A Pseudorabies virus helicase (UL5) and UL4 genes, complete cds Length = 3400 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 gcggcgcgctcccggacgcgctcc 321 |||||| ||||||||||||||||| Sbjct: 329 gcggcgagctcccggacgcgctcc 306 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,333,652 Number of Sequences: 3902068 Number of extensions: 2333652 Number of successful extensions: 60900 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58036 Number of HSP's gapped (non-prelim): 2851 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
