ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GCST_PROAC (Q6A9R6) Aminomethyltransferase (EC 2.1.2.10) (Glycin... 29 3.2
2PCBA_PROMA (Q7VCF7) Divinyl chlorophyll a/b light-harvesting pro... 28 4.1
3HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin) 28 5.4
4END4_STRCO (Q9S2N2) Probable endonuclease 4 (EC 3.1.21.2) (Endon... 28 7.1
5PCBA_PROMT (Q46LS0) Divinyl chlorophyll a/b light-harvesting pro... 27 9.2
6MURG_SYMTH (Q67Q48) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 27 9.2

>GCST_PROAC (Q6A9R6) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage|
           system T protein)
          Length = 371

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 325 DEALGLVEGEVRVGHLGHRLALALVDPDV 239
           D+ +G +   +    LGH +A+A VDPDV
Sbjct: 314 DKTVGAITSGILSPTLGHPIAMAFVDPDV 342



to top

>PCBA_PROMA (Q7VCF7) Divinyl chlorophyll a/b light-harvesting protein pcbA|
          Length = 351

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 185 LAVTLGAHTARQQLAHAPNVWVDXRKREAVPEVADPDLALDEAERFVGGSMFRKVAHV 358
           +A   GA T  +     P+V +  +   A+P +A   +  DEA  FVGG+    +A V
Sbjct: 38  IAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDEAGTFVGGTTVTAIAIV 95



to top

>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)|
          Length = 3133

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 228  ASCCRAVCAPSVTARPIIPSATYTGT*SP 142
            A C  A C P +T  P    A+YTGT +P
Sbjct: 3068 ARCHCAACGPGLTKHPKPGHASYTGTKNP 3096



to top

>END4_STRCO (Q9S2N2) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)|
           (Endodeoxyribonuclease IV)
          Length = 294

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 98  STAAAHAERPKAKPVGDYVPVYVALGMIGLAVTLGAHTARQQLAHAPNVWVDXRKREAVP 277
           STA++ +  P+  PVG +VPV   L  +GL+       AR+  A A  V+V   +  A P
Sbjct: 2   STASSSSSLPR-NPVGGHVPVAGGLHSVGLSY------ARELKAEAVQVFVANPRGWATP 54



to top

>PCBA_PROMT (Q46LS0) Divinyl chlorophyll a/b light-harvesting protein pcbA|
          Length = 349

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 185 LAVTLGAHTARQQLAHAPNVWVDXRKREAVPEVADPDLALDEAERFVGGSMFRKVA 352
           +A   GA T  +     P+V +  +   A+P +A   +  DE   FVGGS    VA
Sbjct: 38  IAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDETGTFVGGSAVVAVA 93



to top

>MURG_SYMTH (Q67Q48) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 374

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 257 RKREAVPEVADPDLALDEAERFVG 328
           R R A+ EVADPD A   A R VG
Sbjct: 336 RMRAALGEVADPDAARTIARRIVG 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,138,351
Number of Sequences: 219361
Number of extensions: 500048
Number of successful extensions: 1598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
to top