Clone Name | bart07a10 |
---|---|
Clone Library Name | barley_pub |
>GCST_PROAC (Q6A9R6) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 371 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 325 DEALGLVEGEVRVGHLGHRLALALVDPDV 239 D+ +G + + LGH +A+A VDPDV Sbjct: 314 DKTVGAITSGILSPTLGHPIAMAFVDPDV 342
>PCBA_PROMA (Q7VCF7) Divinyl chlorophyll a/b light-harvesting protein pcbA| Length = 351 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +2 Query: 185 LAVTLGAHTARQQLAHAPNVWVDXRKREAVPEVADPDLALDEAERFVGGSMFRKVAHV 358 +A GA T + P+V + + A+P +A + DEA FVGG+ +A V Sbjct: 38 IAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDEAGTFVGGTTVTAIAIV 95
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 228 ASCCRAVCAPSVTARPIIPSATYTGT*SP 142 A C A C P +T P A+YTGT +P Sbjct: 3068 ARCHCAACGPGLTKHPKPGHASYTGTKNP 3096
>END4_STRCO (Q9S2N2) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 294 Score = 27.7 bits (60), Expect = 7.1 Identities = 21/60 (35%), Positives = 31/60 (51%) Frame = +2 Query: 98 STAAAHAERPKAKPVGDYVPVYVALGMIGLAVTLGAHTARQQLAHAPNVWVDXRKREAVP 277 STA++ + P+ PVG +VPV L +GL+ AR+ A A V+V + A P Sbjct: 2 STASSSSSLPR-NPVGGHVPVAGGLHSVGLSY------ARELKAEAVQVFVANPRGWATP 54
>PCBA_PROMT (Q46LS0) Divinyl chlorophyll a/b light-harvesting protein pcbA| Length = 349 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +2 Query: 185 LAVTLGAHTARQQLAHAPNVWVDXRKREAVPEVADPDLALDEAERFVGGSMFRKVA 352 +A GA T + P+V + + A+P +A + DE FVGGS VA Sbjct: 38 IAFWAGAFTLFELARFDPSVPMGHQPLIALPHLATLGIGFDETGTFVGGSAVVAVA 93
>MURG_SYMTH (Q67Q48) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 374 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +2 Query: 257 RKREAVPEVADPDLALDEAERFVG 328 R R A+ EVADPD A A R VG Sbjct: 336 RMRAALGEVADPDAARTIARRIVG 359 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,138,351 Number of Sequences: 219361 Number of extensions: 500048 Number of successful extensions: 1598 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1597 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)