ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart07a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
3dbj|AK063652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
5gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 46 0.081
6emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete ch... 44 0.32
7gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.32
8gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 44 0.32
9gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosy... 44 0.32
10gb|AY657125.1| Synthetic construct Peudomonas aeruginosa clone F... 42 1.3
11emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 42 1.3
12gb|AE004646.1| Pseudomonas aeruginosa PAO1, section 207 of 529 o... 42 1.3
13gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 5.0
14gb|AY823556.1| Pennisetum glaucum DRE binding factor mRNA, parti... 40 5.0
15gb|AC168047.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.0
16ref|XM_959036.1| Neurospora crassa OR74A hypothetical protein ( ... 40 5.0
17ref|XM_330026.1| Neurospora crassa OR74A hypothetical protein ( ... 40 5.0
18gb|AY471580.1| Burkholderia pseudomallei strain 1026b clone pSH3... 40 5.0
19gb|AE014075.1| Escherichia coli CFT073, complete genome 40 5.0
20gb|CP000243.1| Escherichia coli UTI89, complete genome 40 5.0
21ref|XM_501884.1| Yarrowia lipolytica CLIB122, YALI0C15873g predi... 40 5.0
22gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 5.0
23gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 geno... 40 5.0
24emb|BX842624.1| Neurospora crassa DNA linkage group I BAC clone ... 40 5.0
25emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segmen... 40 5.0
26emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 40 5.0
27emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 5.0
28dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 5.0
29gb|AE005971.1| Caulobacter crescentus CB15 section 297 of 359 of... 40 5.0
30gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.0
31gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.0
32dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
34gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 5.0
35gb|AE004977.1| Halobacterium sp. NRC-1 section 8 of 170 of the c... 40 5.0
36emb|Y17736.2|SCY17736 Streptomyces coelicolor partial nadE, glnE... 40 5.0
37gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.0
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.0
39gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.0
40gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
42emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.0
43emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.0
44gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 5.0
45emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 5.0
46dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 5.0
47gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 5.0
48gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 minutes 40 5.0
49gb|CP000036.1| Shigella boydii Sb227, complete genome 40 5.0
50gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 5.0
51gb|M89479.1|ECOUHPABCT Escherichia coli uhpABCT operon encoding ... 40 5.0
52gb|M17102.1|ECOUHP E.coli uhp operon encoding UhpA, UhpB, UhpC, ... 40 5.0 
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0080I08, complete sequence
          Length = 197156

 Score =  141 bits (71), Expect = 2e-30
 Identities = 184/222 (82%)
 Strand = Plus / Minus

                                                                         
Query: 146   gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 205
             |||||||||||||||||||| ||| ||||||||||||   || ||||| |||||||   |
Sbjct: 29633 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 29574

                                                                         
Query: 206   cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacnagcgcaagcgc 265
                |||||| ||||||||||||||||||||||||||||  || ||||| ||   ||||| 
Sbjct: 29573 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 29514

                                                                         
Query: 266   gaggcggtgcccgaggtggccgacccggacctcgccctcgacgaggccgagcgcttcgtc 325
             ||| |||||||||||||||| |  |||||| | || ||||||||||| ||||| ||||||
Sbjct: 29513 gagacggtgcccgaggtggcggcgccggacatggcgctcgacgaggcggagcggttcgtc 29454

                                                       
Query: 326   ggcggctccatgttccggaaggtcgcccacgtccaggacgac 367
             ||||| ||  ||||||| ||||| || ||||| |||||||||
Sbjct: 29453 ggcgggtcgctgttccgcaaggtggcgcacgtgcaggacgac 29412
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  141 bits (71), Expect = 2e-30
 Identities = 184/222 (82%)
 Strand = Plus / Minus

                                                                            
Query: 146      gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 205
                |||||||||||||||||||| ||| ||||||||||||   || ||||| |||||||   |
Sbjct: 18764366 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 18764307

                                                                            
Query: 206      cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacnagcgcaagcgc 265
                   |||||| ||||||||||||||||||||||||||||  || ||||| ||   ||||| 
Sbjct: 18764306 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 18764247

                                                                            
Query: 266      gaggcggtgcccgaggtggccgacccggacctcgccctcgacgaggccgagcgcttcgtc 325
                ||| |||||||||||||||| |  |||||| | || ||||||||||| ||||| ||||||
Sbjct: 18764246 gagacggtgcccgaggtggcggcgccggacatggcgctcgacgaggcggagcggttcgtc 18764187

                                                          
Query: 326      ggcggctccatgttccggaaggtcgcccacgtccaggacgac 367
                ||||| ||  ||||||| ||||| || ||||| |||||||||
Sbjct: 18764186 ggcgggtcgctgttccgcaaggtggcgcacgtgcaggacgac 18764145
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>dbj|AK063652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B03, full
           insert sequence
          Length = 770

 Score =  141 bits (71), Expect = 2e-30
 Identities = 184/222 (82%)
 Strand = Plus / Plus

                                                                       
Query: 146 gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 205
           |||||||||||||||||||| ||| ||||||||||||   || ||||| |||||||   |
Sbjct: 198 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 257

                                                                       
Query: 206 cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacnagcgcaagcgc 265
              |||||| ||||||||||||||||||||||||||||  || ||||| ||   ||||| 
Sbjct: 258 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 317

                                                                       
Query: 266 gaggcggtgcccgaggtggccgacccggacctcgccctcgacgaggccgagcgcttcgtc 325
           ||| |||||||||||||||| |  |||||| | || ||||||||||| ||||| ||||||
Sbjct: 318 gagacggtgcccgaggtggcggcgccggacatggcgctcgacgaggcggagcggttcgtc 377

                                                     
Query: 326 ggcggctccatgttccggaaggtcgcccacgtccaggacgac 367
           ||||| ||  ||||||| ||||| || ||||| |||||||||
Sbjct: 378 ggcgggtcgctgttccgcaaggtggcgcacgtgcaggacgac 419
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  141 bits (71), Expect = 2e-30
 Identities = 184/222 (82%)
 Strand = Plus / Minus

                                                                            
Query: 146      gactacgtgccggtgtacgtagcgctggggatgatcggcctggcggtgacgctgggggcg 205
                |||||||||||||||||||| ||| ||||||||||||   || ||||| |||||||   |
Sbjct: 18924439 gactacgtgccggtgtacgtggcgatggggatgatcgcggtgtcggtgtcgctgggcctg 18924380

                                                                            
Query: 206      cacacggcgcggcagcagctggcgcacgcgcccaacgtctgggtcgacnagcgcaagcgc 265
                   |||||| ||||||||||||||||||||||||||||  || ||||| ||   ||||| 
Sbjct: 18924379 gcgacggcgaggcagcagctggcgcacgcgcccaacgtgcggctcgacaagaagaagcgg 18924320

                                                                            
Query: 266      gaggcggtgcccgaggtggccgacccggacctcgccctcgacgaggccgagcgcttcgtc 325
                ||| |||||||||||||||| |  |||||| | || ||||||||||| ||||| ||||||
Sbjct: 18924319 gagacggtgcccgaggtggcggcgccggacatggcgctcgacgaggcggagcggttcgtc 18924260

                                                          
Query: 326      ggcggctccatgttccggaaggtcgcccacgtccaggacgac 367
                ||||| ||  ||||||| ||||| || ||||| |||||||||
Sbjct: 18924259 ggcgggtcgctgttccgcaaggtggcgcacgtgcaggacgac 18924218
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 287     gacccggacctcgccctcgacgaggccgagc 317
               |||||| |||||||||||| |||||||||||
Sbjct: 4164802 gacccgcacctcgccctcgccgaggccgagc 4164832



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 138    ccgtgggcgactacgtgccggtgtacgtagcg 169
              ||||||||| | ||||||||||||||| ||||
Sbjct: 888413 ccgtgggcggcgacgtgccggtgtacgaagcg 888382



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     ggtcggcctccaccgcggcc 109
              ||||||||||||||||||||
Sbjct: 286520 ggtcggcctccaccgcggcc 286539
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>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12
          Length = 299350

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 308   gaggccgagcgcttcgtcggcg 329
             ||||||||||||||||||||||
Sbjct: 38523 gaggccgagcgcttcgtcggcg 38544
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 210     cggcgcggcagcagctggcgca 231
               ||||||||||||||||||||||
Sbjct: 2495629 cggcgcggcagcagctggcgca 2495608
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 298    cgccctcgacgaggccgagcgcttcg 323
              ||||||||||||||||||||| ||||
Sbjct: 211617 cgccctcgacgaggccgagcgtttcg 211592
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>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster,
             complete sequence
          Length = 59816

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 292   ggacctcgccctcgacgaggccgagc 317
             |||||||| |||||||||||||||||
Sbjct: 30386 ggacctcgacctcgacgaggccgagc 30411
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>gb|AY657125.1| Synthetic construct Peudomonas aeruginosa clone FLH032883.01F
           PA2198 gene, partial cds
          Length = 345

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 301 cctcgacgaggccgagcgcttcgtc 325
           |||||||||||||| ||||||||||
Sbjct: 138 cctcgacgaggccgggcgcttcgtc 162
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 210    cggcgcggcagcagctggcgc 230
              |||||||||||||||||||||
Sbjct: 203079 cggcgcggcagcagctggcgc 203099
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>gb|AE004646.1| Pseudomonas aeruginosa PAO1, section 207 of 529 of the complete
            genome
          Length = 11244

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 301  cctcgacgaggccgagcgcttcgtc 325
            |||||||||||||| ||||||||||
Sbjct: 5983 cctcgacgaggccgggcgcttcgtc 6007
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3904460 gctggggatgatcggcctgg 3904479
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>gb|AY823556.1| Pennisetum glaucum DRE binding factor mRNA, partial cds
          Length = 489

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 305 gacgaggccgagcgcttcgt 324
           ||||||||||||||||||||
Sbjct: 160 gacgaggccgagcgcttcgt 179
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>gb|AC168047.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940115D9, complete sequence
          Length = 108001

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 214  gcggcagcagctggcgcacgcgcc 237
            ||||| ||||||||||||||||||
Sbjct: 5760 gcggccgcagctggcgcacgcgcc 5737
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>ref|XM_959036.1| Neurospora crassa OR74A hypothetical protein ( probable chaperonin
            CCT4 [imported] - Neurospora crassa OR74A  ) (NCU02839.1)
            partial mRNA
          Length = 1602

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  cctcgacgaggccgagcgct 320
            ||||||||||||||||||||
Sbjct: 1170 cctcgacgaggccgagcgct 1189
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>ref|XM_330026.1| Neurospora crassa OR74A hypothetical protein ( probable chaperonin
            CCT4 [imported] - Neurospora crassa OR74A  ) (NCU02839.1)
            partial mRNA
          Length = 1602

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  cctcgacgaggccgagcgct 320
            ||||||||||||||||||||
Sbjct: 1170 cctcgacgaggccgagcgct 1189
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>gb|AY471580.1| Burkholderia pseudomallei strain 1026b clone pSH3 unknown gene
          Length = 756

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  acggccgccctgcagcaggg 75
           ||||||||||||||||||||
Sbjct: 589 acggccgccctgcagcaggg 608
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 4351765 gctggggatgatcggcctgg 4351746
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 4112990 gctggggatgatcggcctgg 4112971
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>ref|XM_501884.1| Yarrowia lipolytica CLIB122, YALI0C15873g predicted mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 265 cgaggcggtgcccgaggtggccga 288
           |||||||||||||| |||||||||
Sbjct: 184 cgaggcggtgcccgtggtggccga 207
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3844993 gctggggatgatcggcctgg 3844974
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>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete
              sequence
          Length = 158742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gccgccgccgctctccgcac 57
              ||||||||||||||||||||
Sbjct: 110673 gccgccgccgctctccgcac 110654
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>emb|BX842624.1| Neurospora crassa DNA linkage group I BAC clone B10D6
          Length = 89019

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   cctcgacgaggccgagcgct 320
             ||||||||||||||||||||
Sbjct: 85242 cctcgacgaggccgagcgct 85261
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>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tcggcctggcggtgacgctg 199
              ||||||||||||||||||||
Sbjct: 218428 tcggcctggcggtgacgctg 218409
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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 311   gccgagcgcttcgtcggcggctccatgttccggaag 346
             ||||||||||||| |||| || |||| |||||||||
Sbjct: 85263 gccgagcgcttcggcggcagcaccatcttccggaag 85228
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    gccgacccggacctcgccct 303
              ||||||||||||||||||||
Sbjct: 303621 gccgacccggacctcgccct 303602
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3793445 gctggggatgatcggcctgg 3793464
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>gb|AE005971.1| Caulobacter crescentus CB15 section 297 of 359 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ggcgcggcagcagctggcgc 230
            ||||||||||||||||||||
Sbjct: 9052 ggcgcggcagcagctggcgc 9033
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 286     cgacccggacctcgccctcg 305
               ||||||||||||||||||||
Sbjct: 4116856 cgacccggacctcgccctcg 4116837
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    cgacgaggccgagcgcttcg 323
              ||||||||||||||||||||
Sbjct: 330034 cgacgaggccgagcgcttcg 330053
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cggcgcggcagcagctggcg 229
                ||||||||||||||||||||
Sbjct: 25781977 cggcgcggcagcagctggcg 25781996
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      gccgccgccgctctccgcac 57
               ||||||||||||||||||||
Sbjct: 6491507 gccgccgccgctctccgcac 6491526
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3868834 gctggggatgatcggcctgg 3868815
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>gb|AE004977.1| Halobacterium sp. NRC-1 section 8 of 170 of the complete genome
          Length = 10177

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  gcccacgtccaggacgaccg 369
            ||||||||||||||||||||
Sbjct: 1079 gcccacgtccaggacgaccg 1098
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>emb|Y17736.2|SCY17736 Streptomyces coelicolor partial nadE, glnE genes and orfu2E and
            orfu1E
          Length = 5190

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  gccgacccggacctcgccct 303
            ||||||||||||||||||||
Sbjct: 2986 gccgacccggacctcgccct 3005
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cggcctggcggtgacgctgg 200
              ||||||||||||||||||||
Sbjct: 895230 cggcctggcggtgacgctgg 895211
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 92      tcggcctccaccgcggccgcgcac 115
               |||||| |||||||||||||||||
Sbjct: 3486936 tcggccgccaccgcggccgcgcac 3486913



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3008122 gctggggatgatcggcctgg 3008103
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     cgacgaggccgagcgcttcg 323
               ||||||||||||||||||||
Sbjct: 3179757 cgacgaggccgagcgcttcg 3179738
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      gccgccgccgctctccgcac 57
               ||||||||||||||||||||
Sbjct: 6493893 gccgccgccgctctccgcac 6493912
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cggcgcggcagcagctggcg 229
                ||||||||||||||||||||
Sbjct: 25710153 cggcgcggcagcagctggcg 25710172
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 210  cggcgcggcagcagctggcg 229
            ||||||||||||||||||||
Sbjct: 3428 cggcgcggcagcagctggcg 3447
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 167131

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    cggcgcggcagcagctggcg 229
              ||||||||||||||||||||
Sbjct: 149215 cggcgcggcagcagctggcg 149234
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 4703085 gctggggatgatcggcctgg 4703066
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 265     cgaggcggtgcccgaggtggccga 288
               |||||||||||||| |||||||||
Sbjct: 2256206 cgaggcggtgcccgtggtggccga 2256183
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 4634102 gctggggatgatcggcctgg 4634083
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3881050 gctggggatgatcggcctgg 3881031
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>gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 minutes
          Length = 136254

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gctggggatgatcggcctgg 188
             ||||||||||||||||||||
Sbjct: 36364 gctggggatgatcggcctgg 36345
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3719089 gctggggatgatcggcctgg 3719108
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctggggatgatcggcctgg 188
               ||||||||||||||||||||
Sbjct: 3789987 gctggggatgatcggcctgg 3789968
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>gb|M89479.1|ECOUHPABCT Escherichia coli uhpABCT operon encoding hexosephosphate utilization
            protein (uhpA) gene, complete cds, and hexosephosphate
            transport protein (uhpB, uhpC, uhpT) genes, complete cds
          Length = 5403

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  gctggggatgatcggcctgg 188
            ||||||||||||||||||||
Sbjct: 3919 gctggggatgatcggcctgg 3938
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>gb|M17102.1|ECOUHP E.coli uhp operon encoding UhpA, UhpB, UhpC, and UhpT protein,
            (encoding hexose phosphate transport protein), complete
            cds, and an ilvBN operon encoded protein, 3' end
          Length = 5403

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  gctggggatgatcggcctgg 188
            ||||||||||||||||||||
Sbjct: 3919 gctggggatgatcggcctgg 3938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,421,518
Number of Sequences: 3902068
Number of extensions: 2421518
Number of successful extensions: 56505
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54248
Number of HSP's gapped (non-prelim): 2257
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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