ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07a09 |
|---|---|
| Clone Library Name | barley_pub |
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 30.8 bits (68), Expect = 0.89 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 320 DGEPDDDDWPLQEPDAVRGVRPRRQPDSAPQHRDRRQE 207 D + D+D+ EP V+GV+P + +AP D +E Sbjct: 155 DSDEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEE 192
>PRD13_HUMAN (Q9H4Q3) PR domain zinc finger protein 13 (PR domain-containing| protein 13) Length = 717 Score = 30.8 bits (68), Expect = 0.89 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 221 PGAGGRNLAGVAGEHHGLHPVPAVANHHHRAR 316 PG+G + AG AG HH H A+HHH + Sbjct: 349 PGSGENSAAGGAGHHHHHH-----AHHHHHPK 375
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -2 Query: 320 DGEPDDDDWPLQEPDAVRGVRPRRQPDSAPQHRDRRQERYE 198 D + DD++ EP V+GV+P + +AP D + E Sbjct: 157 DEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDDEDE 197
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = +2 Query: 185 GGGELHNVPGVDPGAGGRNLAGVAGEHHGLHPVPAVANHHH 307 G G + VPG PG GG N H + P +HHH Sbjct: 638 GHGHMGGVPGPGPGPGGMN----GPPHPHMSPHHGHPHHHH 674
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -2 Query: 293 PLQEPDAVRGVRPRRQPDSAPQHRDRRQERYE 198 PL+EP A + + +++ S +HRDR R++ Sbjct: 1186 PLEEPKAKKHKKSKKKKKSKDKHRDRDSRRHQ 1217
>RL4_METKA (Q8TY91) 50S ribosomal protein L4P| Length = 260 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = +2 Query: 212 GVDPGAGGRNLAGVAGEHHGLHPVPAVANHHHRA 313 G DP AG R A G HG+ VP V H A Sbjct: 47 GTDPRAGFRTSAESWGAGHGVAMVPRVKGRRHPA 80
>MLF3_YEAST (P32047) Protein MLF3 (Multicopy suppressor of leflunomide| sensitivity 3) Length = 452 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +2 Query: 197 LHNVPGVDPGAGGRNLAGVAGEHHGLHPVPAVANHHHRAR 316 L NV A + +A + + L+P+ + NHHHR R Sbjct: 81 LDNVIPTSRSASNSTTSSLAHQEYILNPICNMQNHHHRRR 120
>MAF_HUMAN (O75444) Transcription factor Maf (Proto-oncogene c-maf)| Length = 403 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/41 (39%), Positives = 17/41 (41%) Frame = +2 Query: 182 AGGGELHNVPGVDPGAGGRNLAGVAGEHHGLHPVPAVANHH 304 AGGG + G G GG G AG LHP A H Sbjct: 216 AGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLH 256
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +2 Query: 218 DPGAGG-RNLAGVAGEHHGLHPVPAVANHH 304 +PG G R L G G H+GL +P +A HH Sbjct: 1010 EPGEKGPRGLPGFKG-HNGLQGLPGIAGHH 1038
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +2 Query: 218 DPG-AGGRNLAGVAGEHHGLHPVPAVANHH 304 +PG G R L G+ G H+GL +P +A HH Sbjct: 1008 EPGDKGPRGLPGLKG-HNGLQGLPGLAGHH 1036
>BFR2_NEUCR (Q7S6P8) Protein bfr-2| Length = 636 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 320 DGEPDDDDWPLQEPDAVRGVRPRRQPDSAPQHRDRRQERYEV 195 D E DDD+ L++ ++ G PD+A RD E E+ Sbjct: 100 DEEDDDDEDDLEDGESETGSEEFADPDTADLERDHIDEDAEI 141
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/44 (25%), Positives = 17/44 (38%) Frame = -2 Query: 311 PDDDDWPLQEPDAVRGVRPRRQPDSAPQHRDRRQERYEVHHPQH 180 P DD P + ++ + R Q H + + Y HH H Sbjct: 100 PPDDSMPCRHHQRIKHLSLRHQRKHQHTHHQNKPQHYHHHHHHH 143
>SRF_DROME (Q24535) Serum response factor homolog (dSRF) (Protein blistered)| Length = 449 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -2 Query: 293 PLQEPDAVRGVRPRRQPDS--APQHRDRRQERYEVHHPQH 180 P+Q P+ G P Q + +PQH ++Q++ + QH Sbjct: 54 PMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQH 93
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 8/40 (20%) Frame = +2 Query: 212 GVDPGAGGRNLAGVAG--------EHHGLHPVPAVANHHH 307 G G GR + GVAG +HHG HP + A H Sbjct: 222 GTVMGVSGRPVCGVAGIPSSQSGAQHHGQHPAGSAAPLPH 261
>DFD_DROME (P07548) Homeotic protein deformed| Length = 586 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Frame = +2 Query: 230 GGRNLAGVAGEHHGLHPVPAVAN---HHH 307 GG G+ G H +HP V++ HHH Sbjct: 66 GGGGAGGMTGHPHSMHPADMVSDYMAHHH 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.121 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,143,898 Number of Sequences: 219361 Number of extensions: 449548 Number of successful extensions: 1691 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1680 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
